Download MendeleyTo be published
Dann, R., Lansky, S., Lavid, N., Zehavi, A., Belakhov, V., Baasov, T., Manjasetty, B., Belrhali, H., Shoham, Y., Shoham, G.To be published.
4RHH
Crystal structure of the catalytic mutant Xyn52B2-E335G, a GH52 Beta-D-xylosidase from Geobacillus stearothermophilus T6
- PDB DOI: https://doi.org/10.2210/pdb4RHH/pdb
- Classification: HYDROLASE
- Organism(s): Geobacillus stearothermophilus
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-10-02 Released: 2015-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.203
- R-Value Work: 0.150
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-xylosidase | 705 | Geobacillus stearothermophilus | Mutation(s): 1 Gene Names: xynB2 |  | |
UniProt | |||||
Find proteins for Q09LZ0 (Geobacillus stearothermophilus) Explore Q09LZ0 Go to UniProtKB: Q09LZ0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q09LZ0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | F [auth A] G [auth A] I [auth B] K [auth C] L [auth C] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| CA Query on CA | E [auth A], H [auth B], J [auth C], M [auth C], N [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.203
- R-Value Work: 0.150
- R-Value Observed: 0.153
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.45 | α = 90 |
| b = 119.08 | β = 90 |
| c = 243.02 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2015-10-14 Deposition Author(s): Dann, R., Lansky, S., Lavid, N., Zehavi, A., Belakhov, V., Baasov, T., Manjasetty, B., Belrhali, H., Shoham, Y., Shoham, G.
Revision History (Full details and data files)
- Version 1.0: 2015-10-14
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
