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African Journal of<br />
Biotechnology<br />
Volume10 Number 72 16 November, 2011<br />
ISSN 1684-5315
ABOUT AJB<br />
The African Journal of Biotechnology (AJB) is published bi-weekly (one volume per year) by <strong>Academic</strong><br />
Journals.<br />
African Journal of Biotechnology (AJB) a new broad-based journal, is an open access journal that was founded<br />
on two key tenets: To publish the most exciting research in all areas of applied biochemistry, industrial<br />
microbiology, molecular biology, genomics and proteomics, food and agricultural technologies, and metabolic<br />
engineering. Secondly, to provide the most rapid turn-around time possible for reviewing and publishing, and<br />
to disseminate the articles freely for teaching and reference purposes. All articles published in AJB are peerreviewed.<br />
Submission of Manuscript<br />
Submit manuscripts as e-mail attachment to the Editorial Office at: ajb@acadjournals.org. A manuscript<br />
number will be mailed to the corresponding author shortly after submission.<br />
The African Journal of Biotechnology will only accept manuscripts submitted as e-mail attachments.<br />
Please read the Instructions for Authors before submitting your manuscript. The manuscript files should be<br />
given the last name of the first author.
Editors<br />
George Nkem Ude, Ph.D<br />
Plant Breeder & Molecular Biologist<br />
Department of Natural Sciences<br />
Crawford Building, Rm 003A<br />
Bowie State University<br />
14000 Jericho Park Road<br />
Bowie, MD 20715, USA<br />
N. John Tonukari, Ph.D<br />
Department of Biochemistry<br />
Delta State University<br />
PMB 1<br />
Abraka, Nigeria<br />
Prof. Dr. AE Aboulata<br />
Plant Path. Res. Inst., ARC, POBox 12619, Giza,<br />
Egypt<br />
30 D, El-Karama St., Alf Maskan, P.O. Box 1567,<br />
Ain Shams, Cairo,<br />
Egypt<br />
Dr. S.K Das<br />
Department of Applied Chemistry<br />
and Biotechnology, University of Fukui,<br />
Japan<br />
Prof. Okoh, A. I<br />
Applied and Environmental Microbiology Research<br />
Group (AEMREG),<br />
Department of Biochemistry and Microbiology,<br />
University of Fort Hare.<br />
P/Bag X1314 Alice 5700,<br />
South Africa<br />
Dr. Ismail TURKOGLU<br />
Department of Biology Education,<br />
Education Faculty, Fırat University,<br />
Elazığ,<br />
Turkey<br />
Prof T.K.Raja, PhD FRSC (UK)<br />
Department of Biotechnology<br />
PSG COLLEGE OF TECHNOLOGY (Autonomous)<br />
(Affiliated to Anna University)<br />
Coimbatore-641004, Tamilnadu,<br />
INDIA.<br />
Dr. George Edward Mamati<br />
Horticulture Department,<br />
Jomo Kenyatta University of Agriculture<br />
and Technology,<br />
P. O. Box 62000-00200,<br />
Nairobi, Kenya.<br />
Dr Helal Ragab Moussa<br />
Bahnay, Al-bagour, Menoufia,<br />
Egypt.<br />
Dr VIPUL GOHEL<br />
Flat No. 403, Alankar Apartment, Sector 56, Gurgaon-<br />
122 002,<br />
<strong>India</strong>.<br />
Dr. Sang-Han Lee<br />
Department of Food Science & Biotechnology,<br />
Kyungpook National University<br />
Daegu 702-701,<br />
Korea.<br />
Dr. Bhaskar Dutta<br />
DoD Biotechnology High Performance Computing<br />
Software Applications<br />
Institute (BHSAI)<br />
U.S. Army Medical Research and Materiel Command<br />
2405 Whittier Drive<br />
Frederick, MD 21702<br />
Dr. Muhammad Akram<br />
Faculty of Eastern Medicine and Surgery,<br />
Hamdard Al-Majeed College of Eastern Medicine,<br />
Hamdard University,<br />
Karachi.<br />
Dr. M.MURUGANANDAM<br />
Departtment of Biotechnology<br />
St. Michael College of Engineering & Technology,<br />
Kalayarkoil,<br />
<strong>India</strong>.<br />
Dr. Gökhan Aydin<br />
Suleyman Demirel University,<br />
Atabey Vocational School,<br />
Isparta-Türkiye,<br />
Dr. Rajib Roychowdhury<br />
Centre for Biotechnology (CBT),<br />
Visva Bharati,<br />
West-Bengal,<br />
<strong>India</strong>.<br />
Dr.YU JUNG KIM<br />
Department of Chemistry and Biochemistry<br />
California State University, San Bernardino<br />
5500 University Parkway<br />
San Bernardino, CA 92407
Editorial Board<br />
Dr. Takuji Ohyama<br />
Faculty of Agriculture, Niigata University<br />
Dr. Mehdi Vasfi Marandi<br />
University of Tehran<br />
Dr. FÜgen DURLU-ÖZKAYA<br />
Gazi Üniversity, Tourism Faculty, Dept. of<br />
Gastronomy and Culinary Art<br />
Dr. Reza Yari<br />
Islamic Azad University, Boroujerd Branch<br />
Dr. Zahra Tahmasebi Fard<br />
Roudehen branche, Islamic Azad University<br />
Dr. Tarnawski Sonia<br />
University of Neuchâtel – Laboratory of<br />
Microbiology<br />
Dr. Albert Magrí<br />
Giro Technological Centre<br />
Dr. Ping ZHENG<br />
Zhejiang University, Hangzhou,<br />
China.<br />
Prof. Pilar Morata<br />
University of Malaga<br />
Dr. Greg Spear<br />
Rush University Medical Center<br />
Dr. Mousavi Khaneghah<br />
College of Applied Science and<br />
Technology-Applied Food Science, Tehran,<br />
Iran.<br />
Prof. Pavel KALAC<br />
University of South Bohemia,<br />
Czech Republic.<br />
Dr. Kürsat KORKMAZ<br />
Ordu University, Faculty of Agriculture,<br />
Department of Soil Science and Plant nutrition<br />
Dr. Tugay AYAŞAN<br />
Çukurova Agricultural Research Institute, PK:01321,<br />
ADANA-TURKEY.<br />
Dr. Shuyang Yu<br />
Asistant research scientist, Department of<br />
Microbiology, University of Iowa<br />
Address: 51 newton road, 3-730B BSB<br />
bldg.Tel:+319-335-7982, Iowa City, IA, 52246,<br />
USA.<br />
Dr. Binxing Li<br />
E-mail: Binxing.Li@hsc.utah.edu<br />
Dr Hsiu-Chi Cheng<br />
National Cheng Kung University and Hospital.<br />
Dr. Kgomotso P. Sibeko<br />
University of Pretoria,<br />
South Africa.<br />
Dr. Jian Wu<br />
Harbin medical university ,<br />
China.
Electronic submission of manuscripts is strongly<br />
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The length of a full paper should be the minimum required<br />
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Review Process<br />
Instructions for Author<br />
All manuscripts are reviewed by an editor and members of<br />
the Editorial Board or qualified outside reviewers. Authors<br />
cannot nominate reviewers. Only reviewers randomly<br />
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Following the abstract, about 3 to 10 key words that will<br />
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In general, non-standard abbreviations should be used<br />
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The Introduction should provide a clear statement of<br />
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the proposed approach or solution. It should be<br />
understandable to colleagues <strong>from</strong> a broad range of<br />
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Materials and methods should be complete enough<br />
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Results should be presented with clarity and precision.<br />
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describing findings in the authors' experiments.<br />
Previously published findings should be written in the<br />
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The Discussion should interpret the findings in view of<br />
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Begin each legend with a title and include sufficient<br />
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abbreviated according to Chemical Abstracts. Authors<br />
are fully responsible for the accuracy of the references.<br />
Examples:<br />
Diaz E, Prieto MA (2000). Bacterial promoters triggering<br />
biodegradation of aromatic pollutants. Curr. Opin.<br />
Biotech. 11: 467-475.<br />
Dorn E, Knackmuss HJ (1978). Chemical structure and<br />
biodegradability of halogenated aromatic compounds.<br />
Two catechol 1, 2 dioxygenases <strong>from</strong> a 3chlorobenzoate-grown<br />
Pseudomonad. Biochem. J. 174:<br />
73-84.<br />
Pitter P, Chudoba J (1990). Biodegradability of Organic<br />
Substances in<br />
the Aquatic Environment. CRC press, Boca Raton,<br />
Florida, USA.<br />
Alexander M (1965). Biodegradation: Problems of<br />
Molecular Recalcitrance<br />
and Microbial Fallibility. Adv. Appl. Microbiol. 7: 35-80.<br />
Boder ET, Wittrup KD (1997). Yeast surface display for<br />
screening combinatorial polypeptide libraries. Nat.<br />
Biotechnol. 15: 537-553.<br />
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Fees and Charges: Authors are required to pay a $650 handling fee. Publication of an article in the African Journal of<br />
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Submission of a manuscript implies: that the work described has not been published before (except in the form of an<br />
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.<br />
African Journal of Biotechnology<br />
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
International Journal of Medicine and Medical Sciences<br />
Review<br />
ences<br />
ARTICLES<br />
Establishing a biotech-agriculture for China 16113<br />
Zhang Zhengbin, Duan Ziyuan, Shao Hongbo, Chen Peng and Xu Ping<br />
Food processing optimization <strong>using</strong> evolutionary algorithms 16120<br />
Abimbola M Enitan and Josiah Adeyemo<br />
Research Articles<br />
GENETICS AND MOLECULAR BIOLOGY<br />
Maize defensin ZmDEF1 is involved in plant response to fungal<br />
phytopathogens 16128<br />
Baosheng Wang, Jingjuan Yu, Dengyun Zhu and Qian Zhao<br />
Karyotype studies on Tagetes erecta L. and Tagetes patula L. 16138<br />
Pin Zhang, Li Zeng, Yan-Xue Su, Xiao-Wen Gong and Xiao-Sha Wang<br />
Genetic diversity assessment of Diplocyclos palmatus (L.) C. <strong>Jeffrey</strong><br />
<strong>from</strong> <strong>India</strong> <strong>using</strong> <strong>internal</strong> <strong>transcribed</strong> spacer (ITS) sequences of<br />
nuclear ribosomal DNA 16145<br />
M. Ajmal Ali, Fahad M. A. Al-Hemaid1, Joongku Lee, R. K. Choudhary,<br />
Naif A. Al-Harbi and Soo-Yong Kim<br />
Regeneration of plantlets under NaCl stress <strong>from</strong> NaN3 treated<br />
sugarcane explants 16152<br />
Ikram-ul-Haq, Salma Memon, Nazia Parveen Gill and Muhammad<br />
Tahir Rajput
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
ences<br />
PLANT AND AGRICULTURAL TECHNOLOGY<br />
ARTICLES<br />
Proteomic and transcriptomic analysis reveals evidence for the basis of<br />
salt sensitivity in Thai jasmine rice (Oryza sativa L. cv. KDML 105) 16157<br />
Wichuda Jankangram, Sompong Thammasirirak, Meriel G. Jones, James<br />
Hartwell and Piyada Theerakulpisut<br />
Genetic diversity and relationship analysis among accessions of<br />
Aegilops ssp. in Turkey <strong>using</strong> amplified fragment length<br />
polymorphism (AFLP) markers 16167<br />
Ilhan Kaya, Asude Çallak Kirişözü, Figen Yildirim Ersoy, Şahin Dere<br />
and Mahinur S. Akkaya<br />
Determination of total polyphenol content and antityrosinase capacity of<br />
mulberrymedicine (Morusnigra L.) extract 16175<br />
Wu Chun, Xu Li, Wang Yuancheng, Chen Hu and Huang Xianzhi.<br />
Somatic embryogenesis and bulblet regeneration in snakehead<br />
fritillary (Fritillaria meleagris L.) 16181<br />
Petrid Marija, Subotid Angelina, Jevremovid Slađana and Trifunovid<br />
Milana<br />
Meiotic behavior and pollen fertility of five species in the genusEpimedium) 16189<br />
Yu Jiang, Chunbang Ding, Haixia Yue and Ruiwu Yang<br />
ENVIRONMENTAL BIOTECHNOLOGY<br />
In vitro antifungal activity of 63 Iranian plant species against three<br />
different plant pathogenic fungi 16193<br />
Sohbat Bahraminejad, Saeed Abbasi and Mehdi Fazlali
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
ences<br />
ARTICLES<br />
Effects of different photoperiods and concentrations of phosphate on<br />
the growth of the cyanobacterium Cylindrospermopsis raciborskii<br />
(Woloszynska) 16202<br />
Sabahi asl Mitra, Nejatkhah Parisa, Ramezanpour Zohreh, Heidary Negin<br />
Uptake of cadmium <strong>from</strong> hydroponic solutions by willows (Salix spp.)<br />
seedlings 16209<br />
Yongqing Liu, Guang-Cai Chen, Jianfeng Zhang, Xiang Shi and Renmin<br />
Wang<br />
Relationship between abscisic acid (ABA) concentration and some<br />
Physiological traits in two wheat cultivars differing in post-anthesis<br />
drought-resistance 16219<br />
Saeed Saeedipour and Foad Moradi.<br />
Impacts of geo-physical factors and human disturbance on composition<br />
and diversity of roadside vegetation: A case study <strong>from</strong> Xishuangbanna<br />
National Nature Reserve of Southwest China 16228<br />
Dong Shikui, Li Jinpeng, Li Xiaoyan, Liu Shiliang, and Zhao Qinghe.<br />
Modeling spatial pattern of deforestation <strong>using</strong> GIS and logistic regression:<br />
A case study of northern Ilam forests, Ilam province, Iran 16236<br />
Saleh Arekhi<br />
Differential response to water deficit stress in alfalfa (Medicago<br />
sativa) cultivars: Growth, water relations, osmolyte accumulation<br />
and lipid peroxidation 16250<br />
Inès Slama, Selma Tayachi, Asma Jdey, Aida Rouached and Chedly<br />
Abdelly
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
ences<br />
INDUSTRIAL MICROBIOLOGY<br />
ARTICLES<br />
Cloning and characterization of a thermostable 2-deoxy-D-ribose-5-phosphate<br />
aldolase <strong>from</strong> Aciduliprofundum boonei 16260<br />
Xiaopu Yin, Qiuyan Wang, Shu-juan Zhao, Peng-fei Du, Kai-lin Xie, Peng Jin and<br />
Tian Xie<br />
Isolation and characterization of a bacterial cellulose-producing bacterium<br />
derived <strong>from</strong> the persimmon vinegar 16267<br />
Young-Jung Wee, Soo-Yeon Kim, Soon-Do Yoon and Hwa-Won Ryu<br />
Purification and characterization of an endo-1,4-β-glucanase <strong>from</strong>Bacillus<br />
cereus 16277<br />
Hong Yan, Yingjie Dai, Ying Zhang, Lilong Yan and Dan Liu.<br />
APPLIED BIOCHEMISTRY<br />
Chemical composition of Hirsutella beakdumountainsis, a potential substitute<br />
for Cordyceps sinensis 16286<br />
Rong Li, Yu Zhao and Xiaolu Jiang<br />
Phenolic composition and antioxidant capacity of Cherry laurel (Laurocerasus<br />
officinalis Roem.) sampled <strong>from</strong> Trabzon region, Turkey 16293<br />
Fatma Yaylaci Karahalil and Hüseyin Şahin<br />
Exhaust emissions and combustion performances of ethylene glycol<br />
monomethyl ether palm oil monoester as a novel biodiesel 16300<br />
Da-Yong Jiang, Yun Bai and He-jun Guo<br />
Optimization of biodiesel production <strong>from</strong> rice bran oil via immobilized lipase<br />
catalysises 16314<br />
Ying Xia Li, Jian Wei Yang, Feng Li Hui, Wei Wei Fan and Ying Yang
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
ences<br />
ARTICLES<br />
MEDICAL AND PHARMACEUTICAL BIOTECHNOLOGY<br />
Study on correlation between polymorphism of adiponectin receptor gene<br />
and essential hypertension of Xinjiang Uygur, Kazak and Han in China 16325<br />
Wang Zhong, Chen Shaoze, Wang Daowen, Wang Li, Zhai Zhihong, Duan<br />
Juncang, Zhang Wangqiang and Zhang Jingyu<br />
Mechanism of action of pefloxacin on surface morphology, DNA gyrase<br />
activity and dehydrogenase enzymes of Klebsiella aerogenes 16330<br />
Neeta N. Surve and Uttamkumar S. Bagde<br />
Cytotoxic constituents of Clausena excavata 16337<br />
N. W. Muhd Sharif, N. A. Mustahil, H. S. Mohd Noor, M. A.<br />
Sukari*, M. Rahmani, Y. H. Taufiq-Yap and G. C. L. Ee<br />
Antimicrobial activities of methanol and aqueous extracts of the stem<br />
of Bryophyllum pinnatum Kurz (Crassulaceae) 16342<br />
Nwadinigwe, Alfreda Ogochukwu<br />
Determining the relationship between the application of fixed appliances<br />
and periodontal conditions 16347<br />
Ahmad Sheibaninia, Mohammad Ali Saghiri, A. Showkatbakhsh, C. Sunitha,<br />
S. Sepasi, M. Mohamadi and N. Esfahanizadeh<br />
ENTOMOLOGY<br />
Use of pheromone-baited traps for monitoring Ips sexdentatus(Boerner)<br />
(Coleoptera: Curculionidae) in oriental spruce stands 16351<br />
Gonca Ece Ozcan, Mahmut Eroglu and Hazan Alkan Akinci
Table of Contents: Volume 10 Number 72 16 November, 2011<br />
ences<br />
ARTICLES<br />
Distributional record of oak gall wasp (Hymenoptera: Cynipidae) species’<br />
diversity in different regions of West-Azerbaijan, Iran 16361<br />
Abbas Hosseinzadeh<br />
Phosphine resistance in Rhyzopertha dominica (Fabricius) (Coleoptera:<br />
Bostrichidae) <strong>from</strong> different geographical populations in China 16367<br />
XuHong Song, PingPing Wang and HongYu Zhang<br />
Contribution to the knowledge of Gnaphosidae (Arachnida: Araneae) in Turkey 16374<br />
Adile Akpınar, Ismail Varol, Faruk Kutbay and Bilal Taşdemır<br />
PHARMACEUTICAL SCIENCES<br />
A new endophytic taxol- and baccatin III-producing fungus isolated <strong>from</strong> Taxus<br />
chinensis var. Mairei 16379<br />
Yechun Wang and Kexuan Tang<br />
ANIMAL SCIENCE<br />
Heart dysfunction and fibrosis in rat treated with myocardial ischemia and<br />
reperfusion 16387<br />
Cheng-Han Huang, Yi-Ming Huang, Yung-Sheng Tseng, Wei-Chi Lee, Jui-Te Wu,<br />
Zhi-Jia Zheng and Hsi-Tien Wu<br />
Cardiodepression as a possible mechanism of the hypotensive effects of the<br />
methylene chloride/methanol leaf extract of Brillantaisia nitensLindau<br />
(Acanthaceae) in rats 16393<br />
Orelien Sylvain Mtopi Bopda, Theophile Dimo, Ives Seukep Tonkep, Louis<br />
Zapfack, Desire Zeufiet Djomeni and Pierre Kamtchouing<br />
Influence of cross-breeding of native breed sows of Zlotnicka spotted with<br />
boars of Duroc and polish large white (PLW) breeds on the slaughter value<br />
fatteners 16402<br />
Karolina Szulc, Karol Borzuta, Dariusz Lisiak, Janusz T. Buczynski, Jerzy Strzelecki,<br />
Eugenia Grzeskowiak, Fabian Magda and Beata Lisiak
African Journal of Biotechnology Vol. 10(72), pp. 16113-16119, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB10.2366<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Review<br />
Establishing a biotech-modern-agriculture for China<br />
Zhang Zhengbin 1 *, Duan Ziyuan 2 Shao Hongbo 3,4 *, Chen Peng 3,5 and Xu Ping 1<br />
1 Center for Agricultural Resource Research, Institute of Genetics and Developmental Biology of Chinese Academy of<br />
Sciences (CAS), Shijiazhuang 050021, China.<br />
2 Bureau of Biology and Biotechnology, Chinese Academy of Sciences (CAS), Beijing 100864, China.<br />
3 The CAS/Shandong Provincial Key Laboratory of Coastal Environmental Processes, Yantai Institute of Costal Zone<br />
Research, Chinese Academy of Sciences (CAS), Yantai 264003, China.<br />
4 Institute for Life Sciences, Qingdao University of Science &Technology (QUST), Qingdao 266042, China.<br />
5 Graduate University of Chinese Academy of Sciences(CAS), Beijing 100049, China.<br />
Accepted 28 September, 2011<br />
China, with a large population and small amount of arable land, is a populous as well as a large<br />
agricultural country. In order to ensure food security, agricultural sustainable development and<br />
prosperity of agriculture economy, modern agriculture based on biotechnology combined with modern<br />
equipment must be developed. Only in that way can we achieve intensive management and establish a<br />
resource efficiently-utilized and environment-friendly society. According to the developing history,<br />
experience of biotechnology and modern agriculture both at home and abroad, we suggest that<br />
establishing a biotech-modern agriculture country should become a national development goal of<br />
China.<br />
Key words: Biotechnology, modern agriculture, agricultural modernization, national development goal.<br />
INTRODUCTION<br />
In the 21 st century, six crises are proposed to be the main<br />
challenges for the agriculture in China: food security,<br />
water and soil resources, energy, environmental pollution,<br />
rapid population growth and health, and climate change<br />
crisis. The 21 st century is the century of biotechnology,<br />
the counter measures and key to solve these problems is<br />
the development of biotechnology (Zhang, 2006; Zhang<br />
and Duan, 2010; Zhang et al, 2010). To overcome food<br />
security crisis, biotechnology industry including farming,<br />
cultivation, microbial engineering and food processing<br />
industry are supposed to be developed (Zhang, 2006;<br />
Zhang and Duan, 2010; Zhang et al, 2010, Wu, 2010a,<br />
b). While to overcome water and soil resources crisis,<br />
technology and industry of efficient utilization of biological<br />
resources such as biological water saving should be<br />
developed (Zhang, 2006, 2008; Zhang and Duan, 2010;<br />
Wu, 2010a, b). Also, to overcome energy crisis, development<br />
of bioenergy agriculture and biochemical<br />
engineering should be encouraged, especially in the field<br />
*Corresponding author. E-mail: zzb@sjziam.ac.cn,<br />
shaohongbochu@126.com<br />
of biofuel production <strong>from</strong> non-food crops (Zhang and Xu,<br />
2007). Furthermore, to overcome environmental pollution<br />
crisis, we should vigorously develop organic agriculture,<br />
ecological agriculture, green agriculture, low carbon agriculture,<br />
sustainable agriculture and biological agriculture.<br />
Also, in order to reduce pollution sources and eliminate<br />
previous environmental pollution, the government should<br />
give strong support to the development of biological<br />
pesticide, biological fertilizer, biological plastics, biological<br />
treatment and biological engineering industry (Shao et<br />
al., 2010; Ruan et al., 2010). In addition, to overcome<br />
rapid population growth and health crisis, green<br />
agriculture and ecological agriculture are the key points.<br />
Also, biomedicine and plant protection technology, by<br />
which we can reduce the hazards of various kinds of<br />
drugs and pesticides, must be on the developing list.<br />
More healthy foods, nutrition foods and functional foods<br />
are supposed to be produced (Zhang and Wang, 2010;<br />
Zhang, 2011). While to overcome climate changing crisis,<br />
seed project, biological cloning, transgenic technology<br />
and molecular marker- assisted breeding are greatly<br />
helpful (Ruan et al., 2010; Wang et al., 2010; Zhang et al,<br />
2011). Development of urban agriculture (sightseeing<br />
agriculture), facility agriculture, factory farming as well as
16114 Afr. J. Biotechnol.<br />
modern precise agriculture must be accelerated and only<br />
in that way the dependence of agriculture on climate can<br />
be reduced. Our goal is to achieve what we called “the<br />
independent agriculture”.<br />
THE DEVELOPMENT OF MODERN AGRICULTURE<br />
The construction and development of modern agriculture<br />
should be a process closely related to biotechnology<br />
combined with equipment technology. Biotechnology is<br />
considered as the foundation and core of modern<br />
agriculture, while equipment technology as the wings.<br />
With the development of productivity, they underwent the<br />
following two interactive development processes:<br />
Development of biotechnology: natural<br />
agriculture→inorganic agriculture→organic<br />
agriculture→ecological agriculture→green<br />
agriculture→resource efficiently utilized<br />
agriculture→circular agriculture→low-carbon<br />
agriculture→biotech agriculture→sustainable agriculture.<br />
For the development of equipment: human powered<br />
(animal powered) agriculture→mechanized<br />
agriculture→electrified agriculture (information<br />
agriculture)→urban agriculture (sightseeing<br />
agriculture)→facility agriculture→factory<br />
agriculture→modern precise agriculture. The combination<br />
of the aforementioned technologies forms modern agriculture.<br />
The future trend would be sustainable agriculture<br />
in order to achieve harmonious development between<br />
human and nature, and ultimately the coexistence of<br />
human and the earth. From the perspective of modern<br />
agricultural developing history home and abroad, we will<br />
find that modern agriculture went through a developing<br />
period <strong>from</strong> agricultural modernization (agricultural<br />
mechanization, electrification, chemization and irrigation<br />
as main feature) to modern agriculture (agricultural informatization,<br />
biologicalization, and management modernization<br />
as main feature).<br />
There are many different modern agriculture modes as<br />
a result of different natural economic and social<br />
conditions. American economist Vernon Ruttan proved<br />
the following law with empirical data: countries with more<br />
than 30 hm 2 land per capita are basically mechanical<br />
technology-oriented; countries with 3~30 hm 2 land per<br />
capita basically take the road of staggered biotechnologymechanical<br />
way; Countries with less than 3 hm 2 land per<br />
capita mainly are biotechnology-oriented (Jin et al.,<br />
2009). As in China, land per capita is less than 0.1hm 2 ,<br />
hence there is need for biotechnology-oriented modern<br />
agriculture in order to improve resource utilization<br />
efficiency. China, as a populous as well as a large<br />
agricultural country, must be developed into a modern<br />
country with modern agriculture. The United States (US)<br />
as an example of the modern agriculture mode in<br />
developed countries, has its agriculture based on<br />
biotechnology, which is fast developing. As a typical<br />
representative, planting of genetically modified crops (GM<br />
crops) with excellent properties including herbicide<br />
resistance, disease and insect resistance and nutrition<br />
function improvement is developing at an amazing rate.<br />
At the same time, new methods of simplified cultivation<br />
such as conservation tillage, water saving irrigation<br />
(sprinkler irrigation, drip irrigation etc.), and large-scale<br />
mechanization management are adopted and then<br />
combined with information agriculture and precise<br />
agriculture (Zhang et al., 2010). These factors together<br />
constitute an economical and efficient high-tech modern<br />
agriculture mode. Therefore, the developed American<br />
modern agriculture mode is not simply a “mechanized<br />
modern agriculture mode” which is generally believed,<br />
but a modern agriculture mode which is based on<br />
advanced biotechnology. However, this biotechnology is<br />
integrated with mechanical technology and information<br />
technology.<br />
Furthermore, the US has become the largest biotech<br />
crops (including GM crops) planting country in the world.<br />
In 2008, the planting area of GM crops in the US reached<br />
62.5 million hectares, accounting for 50% of the global<br />
total. The American seed multinationals monopolize<br />
agriculture and biological economy in many countries.<br />
For instance, the seed business of two American<br />
agriculture-related companies, Monsanto and DuPont,<br />
respectively accounted for 23 and 15% of the<br />
international market (Han, 2010). In the 2009 World’s<br />
Best 40 Company List, Monsanto was ranked eighth for<br />
its contribution in the agricultural field. The priority<br />
“threshold” for the selected companies is that sales in<br />
2008 reached at least ten billion US dollars and at least a<br />
quarter of its revenue came <strong>from</strong> overseas markets.<br />
Monsanto is the world’s largest seed company, ranked<br />
number one in the field of vegetables and fruits, number<br />
two in utilization of field crops and number three in<br />
agricultural chemistry. It is also the world’s largest<br />
transgenic seed company, owning 90% of the global GM<br />
crops. We can see <strong>from</strong> relevant information that the US<br />
government, including the US Department of Agriculture<br />
and other important departments, has close contact with<br />
the commercial and economic activities of both Monsanto<br />
and DuPont. This is not just purely commercial behavior<br />
of companies, but national or even worldwide resource<br />
war, economic war and food war. The former US<br />
Secretary of State Henry Kissinger, claimed in 1970 that<br />
“If you control oil, you control all of the countries, if you<br />
control food, you control all human”. This tells the<br />
intentions and strategies of American leaders and the US<br />
government to control the world, illustrating the extreme<br />
importance of controlling food. Therefore we need to rely<br />
on agricultural biotechnology and advanced varieties.<br />
Chinese soybean industry is defeated by American<br />
transgenic soybean in a very short term. An even more<br />
shocking fact is that “Xianyu 335”, a corn variety <strong>from</strong><br />
American Pioneer company, has become the third-largest<br />
corn variety planted in China in just three year, and has
also became the first major cultivar in Northeast China.<br />
However, it is now difficult to buy for its high price. These<br />
two typical examples can fully explain the problem <strong>from</strong><br />
which a lesson can be learnt. According to the reports of<br />
China Daily, on September 17th 2010, the agricultural<br />
trade office established by the US Department of<br />
Agriculture in the Northeastern center city Shenyang held<br />
its opening ceremony; it is the fifth office they set up in<br />
China after Beijing, Shanghai, Guangzhou and Chengdu.<br />
Until then, the strategic layout of US agricultural products<br />
has entered the core of China’s granary. Northeast China<br />
is the main producing area of soybean, corn and japonica<br />
rice, also one of the largest granaries. The establishment<br />
will no doubt strengthen their attempts to occupy Chinese<br />
agricultural market. Vice Minister of the US Department of<br />
Agriculture Jim Miller who was on his special trip for this<br />
ceremony did not hide their ambition to northeast China.<br />
He said: “Setting up the fifth trade office in Chinese<br />
mainland shows that US Department of Agriculture<br />
expanded to the center of Northeast China. As one world<br />
trade center of China, Shenyang will provide ample<br />
opportunity for US agricultural exports”. The US has<br />
started to gain a dominant position in the grain and seed<br />
market by virtue of its absolute technical advantages.<br />
Once its transgenic agricultural products were promoted<br />
of mass worldwide, grain seeds cultivated in other<br />
countries are likely to be quickly knocked out <strong>from</strong> the<br />
market, which would lay a solid foundation for the US to<br />
control the world’s food supply <strong>from</strong> the source (Wu et al.,<br />
2010).<br />
It should be noted that a seed can change the world; on<br />
the contrary, a seed can defeat an industry, or even<br />
threaten a country’s food security. An agricultural (seed)<br />
company can also play games with the world’s<br />
agricultural economy and food security. Therefore, the<br />
development of agricultural biotechnology should not be<br />
underestimated; the development of biotech modern<br />
agriculture is unstoppable. In the current circumstances<br />
of economic crisis and food security challenges, we<br />
suggest that establishing a biotech modern agriculture<br />
country should become a national development goal of<br />
China. This is of great practical and historical significance<br />
for the national food and economic security.<br />
BIOTECHNOLOGY AS NATIONAL DEVELOPMENT<br />
GOAL AND COMPETITION STRATEGY IN MANY<br />
COUNTRIES<br />
As early as 1987, The US government convened a group<br />
of biotechnology researchers and national strategy<br />
researchers to study and published a book “Agricultural<br />
biotechnology is a national competition strategy” (Ray,<br />
2003). In 2003, American scientist Ray V. Herren<br />
published his new book “Introduction to Biotechnology:<br />
An Agricultural Revolution”, which was very popular in the<br />
international community and was reprinted by many<br />
Zhengbin et al. 16115<br />
publishing companies. The US government issued a<br />
series of development strategies and blue book reports<br />
such as “Biotechnology in the 21 st Century”. In order to<br />
ensure its leading position in biotechnology industry, highlevel<br />
coordination mechanism and industrial organization<br />
systems are established in the US. Each year, more than<br />
38 billion dollars are invested in biotechnology research<br />
and development (R & D), five bio-valleys and more than<br />
1400 biotechnology companies have been developed. To<br />
encourage the development of biomass energy in<br />
agriculture, the plan is that biomass fuels will replace<br />
10% of the fuel oil consumption by 2020, and 50% by<br />
2050 (Research Report of China, 2010). A special<br />
National Agricultural Biotechnology Council (NABC) was<br />
established in the US. Researching and consulting<br />
organizations of the US congress have paid long-term<br />
attention to biotechnology and its applications in<br />
agriculture. In 2010, two reports were issued, one is<br />
about the background and progress of agricultural<br />
biotechnology (Tadlock and Geoffrey, 2010), and the<br />
other is about the dispute of biotechnology between US<br />
and the European Union (EU) (Charles and Hanrahan,<br />
2010). Although the attitude of the EU towards GM crops<br />
is prudent, its member states are required to actively<br />
develop biomass energy and energy agriculture in order<br />
to alleviate the supply-demand contradiction and improve<br />
the environmental condition. According to the requirements<br />
of the EU, biomass fuels will account for 20% in<br />
the traditional fuel market by 2020 (Research Report of<br />
China, 2010). Turning <strong>from</strong> traditional agriculture to<br />
biological energy agriculture is an important direction<br />
during the agriculture transformation in developed<br />
countries.<br />
In 2005, “High Flyers Think Tank” of Australian<br />
Academy of Science published its proceedings “Biotechnology<br />
and the future of Australian agriculture”( High<br />
Flyers Think Tank, 2005). The goal of the report “development<br />
of biotechnology” issued by British government is to<br />
ensure its world’s second position in biotechnology field.<br />
In Japan, a new strategy called “Biological Industry as<br />
Foundation” was proposed and identified as a national<br />
goal. A new organization “Biotechnology Strategy<br />
Council” headed by the Prime Minister has also been set<br />
up. <strong>India</strong> is also seeking to become a great power of<br />
biotechnology, and has set up its special “Department of<br />
Biotechnology”. In addition, Singaporean government has<br />
drawn up a plan named “Entering the Top Ranks of<br />
Biotechnology in Five Years”. Singapore is expecting to<br />
become a bio-island (Research Report of China, 2010).<br />
After entering the 21 st century, South Korea has<br />
vigorously developed its biotechnology, which is regarded<br />
as a new engine of economic development. Its annual<br />
production value of biology industry has now entered the<br />
reached the advanced level in the world. It is predicted<br />
world top 15. In the field of fermentation technology, stem<br />
cell technology, somatic cloned cattle, AIDS DNA vaccine<br />
and herbicide-resistant crops, they all have currently
16116 Afr. J. Biotechnol.<br />
that in 2010, the total output value of biological industry in<br />
South Korea will reach 3.1 billion dollars, accounting for<br />
1.9% of the international market. These figures will<br />
respectively reach 7.5 billion and 2.0% in 2015, 11.6<br />
billion and 2.2% in 2020 (Yin and Li, 2010).<br />
The international agricultural organizations also attach<br />
great importance to agricultural biotechnology development<br />
and utilization. In an article published in “Science”,<br />
Ismail Serageldin, an expert of Consultative Group on<br />
International Agricultural Research, World Bank, pointed<br />
out that biotechnology will play an important role in food<br />
security in the 21stcentury (Ismail, 1999). In 2000, Food<br />
and Agriculture Organization (FAO) held an international<br />
conference on biotechnology in Japan and published<br />
their declaration on biotechnology, they also constructed<br />
a specialized biotechnology website. Similarly, International<br />
Council of Science (ICSU) published<br />
“Biotechnology and Sustainable Agriculture Report” as<br />
well (Persley et al., 2002). Since 1991, International<br />
Service for the Acquisition of Agri-biotech Applications<br />
(ISAAA) began to pay close attention to the potential of<br />
biotechnology applications in agricultural production and<br />
latest advances in agricultural biotechnology. They<br />
irregularly publish “Biotec crop update” and “Biofuels<br />
Supplement”. In their latest publications “14 Years of<br />
Biotech Agriculture” and “Global Biotech Crops Report<br />
2009”, where they specially mention that Chinese<br />
government has recently approved the cultivation of<br />
transgenic rice and corn.<br />
ESTABLISHING A BIOTECH MODERN<br />
AGRICULTURE: A NATIONAL DEVELOPMENT GOAL<br />
OF CHINA<br />
ISAAA point out that agricultural biotechnology, the<br />
second wave of global biotechnology development, is<br />
now entering a vigorous developing period with the arrival<br />
of this century (the first wave was biotechnology in<br />
medicine industry). Hence developing agricultural<br />
biotechnology in China is worth our deep consideration<br />
and scientific decision-making. Science and technology is<br />
the first productivity, so biotechnology must be the first<br />
productivity in agriculture. Great importance has been<br />
attached to biotechnology in China. A series of books<br />
“Report of the Biotechnology Industry Development in<br />
China” co-published by National Development and the<br />
Reform Committee together with Chinese Society of<br />
Biotechnology is now publishing the seventh book<br />
(National Development and the Reform Committee,<br />
2009). Comrade Deng Xiaoping once pointed out: “The<br />
future of agriculture will eventually depend on bioengineering<br />
technology and other sophisticated technologies.”<br />
Premier Wen Jiabao also mentioned in a<br />
government conference: “In order to solve the food<br />
problem, we must rely on scientific methods, including<br />
biotechnology and transgenic technology.” In 2006, four<br />
deputies to National People's Congress (NPC) put<br />
forward a suggestion about making a national strategy on<br />
biotechnology. Biotechnology was therefore proposed as<br />
a focal point of technology in “Long-term Scientific and<br />
Technological Development Planning Outline (2006 to<br />
2020)” of China.<br />
The biotechnology R & D level of China can get the<br />
leading position among developing countries, even is<br />
world-leading in some fields. China is now one of the few<br />
countries who can independently complete gene<br />
sequencing of main crops. In China, agricultural biotechnology<br />
has the smallest gap with that of developed<br />
countries among all high technologies. Seven plants have<br />
got the commercial production license until October,<br />
2009. The transgenic rice and corn cultivated in China<br />
can increase insect resistance of rice and nutritional<br />
value of feed corn, which can not only increase farmers’<br />
income, create huge economic and social benefits, but<br />
also play a significant role in environmental protection<br />
(Han et al., 2010). The Chinese government has invested<br />
tens of millions of dollars in agricultural biotechnology.<br />
We have the world’s second largest research fund of<br />
biotechnology, preceded only by the US. The current<br />
agricultural biotechnology development is mainly in the<br />
field of biotech crops, particularly in China. Agricultural<br />
GDP includes the output value of animals, crops,<br />
vegetables and forestry. In developed countries, the<br />
output value of animal agriculture accounts for about 55%<br />
of the total agricultural GDP, even as high as 80 to 90% in<br />
some individual countries like Netherlands, Israel.<br />
However, this ratio is only 34% in China while that of<br />
crops is 46~47%. A higher GDP of animal agriculture than<br />
that of crops is an important symbol of modern agriculture<br />
(Long and Li, 2010). Therefore, while keeping the growth<br />
of crop agriculture, we are supposed to pay more<br />
attention to animal and microbe biotechnology at the<br />
same time.<br />
In the early age after liberation, Chairman Mao Zedong<br />
claimed that the fundamental way of agricultural modernization<br />
is agricultural mechanization. We believe it is an<br />
advanced theory on the social and economic conditions<br />
at that time. However, judging <strong>from</strong> the current development<br />
of modern agriculture and biotechnology both at<br />
home and abroad, we believe that in China, the fundamental<br />
way of agriculture is to develop modern<br />
agriculture with combined biotechnology and modern<br />
equipment technology. It is not simply or purely mechanized<br />
agriculture nor biotech agriculture. This should be the<br />
mode of modern agriculture with Chinese characteristics.<br />
Although the Chinese government attaches great<br />
importance to biotechnology and modern agriculture,<br />
there is no overall development strategy. Faced with so<br />
many new concepts of agriculture such as organic<br />
agriculture, ecological agriculture, green agriculture,<br />
biological agriculture; mechanized agriculture, facility<br />
agriculture, modern agriculture, etc, there is a need to<br />
sort out an overall idea of agricultural development and
form a modern agricultural system in China. After a longterm<br />
exploration, we believe that establishing a biotech<br />
modern agriculture country should become a national<br />
development goal.<br />
THE DEVELOPMENT OF BIOTECH AGRICULTURE<br />
During the past 30 years, modern agricultural<br />
development system has changed a lot as the concepts<br />
of biotechnology, agricultural biotechnology, biotech<br />
agriculture, modern agriculture, GM crops and biotech<br />
crop changed. According to the developing process of<br />
agriculture and biotechnology both home and abroad, we<br />
suggest the developing process of biotech modern<br />
agriculture country like this:<br />
Agriculture→Biotechnology→Biotech crops→Agricultural<br />
biotechnology→ Modern agriculture→ Biotech<br />
agriculture→ Biotech modern agriculture→ Biotech<br />
modern agriculture Country. In this developing process,<br />
biotechnology started with one or two techniques simply<br />
applied in agricultural production, and then large scaled<br />
applications in crops (such as virus-free tissue culture,<br />
rapid propagation technology, GM crops, molecular<br />
design breeding), and then universal applications in<br />
agriculture as agricultural biotechnology (including<br />
agricultural food processing, bioenergy agriculture), and<br />
then finally replaced conventional agriculture.<br />
Biotechnology is one aspect of modern agriculture, but<br />
the proportion varies in different stages of modern<br />
agriculture development. Recently, ISAAA noted that<br />
agricultural biotechnology does not mean only GM crops,<br />
but also include traditional breeding, tissue culture,<br />
micropropagation, molecular breeding, marker-assisted<br />
selection, genetic engineering, molecular diagnostic<br />
tools, etc. (International Service for the Acquisition of<br />
Agri-biotech Applications, 2010). However, the current<br />
concentrated area is still GM crop breeding, the concept<br />
and application services of which are still somewhat<br />
limited. In fact, it also includes some other categories,<br />
such as biological breeding, biological energy, biological<br />
fertilizers, biological pesticides, biological control,<br />
biological treatment, biological engineering, biological<br />
refining, biological plastics, biological economy and so<br />
on.<br />
RESEARCH DIRECTIONS OF BIOTECH<br />
AGRICULTURE IN CHINA<br />
In the national forum on agricultural production of major<br />
grain producing areas on September 18th, Vice Premier<br />
Hui Liangyu pointed out that in recent years, faced with<br />
great challenges of natural disasters, the international<br />
financial crisis and the severe impact of abnormal fluctuations<br />
in international agricultural markets, food and<br />
agricultural development are put in a prominent position<br />
Zhengbin et al. 16117<br />
by the Party Central Committee and the State Council. In<br />
current and the coming period, the difficulties and<br />
challenges of agricultural development will keep growing,<br />
increasing pressure of keeping quantitative and structural<br />
balance of agricultural products supply will become more<br />
and more prominent. Hence, to improve food and<br />
agricultural producing capacity as the core, to speed up<br />
the progress of agricultural science and technology, to<br />
improve yields and optimize the product structure as the<br />
main direction, we must vigorously promote institutional<br />
innovation, accelerate the transformation of agricultural<br />
development, strive to build long-term mechanisms to<br />
promote steady agricultural development and increase<br />
income of farmers. Only then the basis of national food<br />
security can be strengthened (Hui, 2010).<br />
In 2009, with the recommendation and promotion of Lu<br />
Yongxiang, president of Chinese Academy of Sciences<br />
(CAS), “Integration and Development Center of Green<br />
Agricultural Technology, CAS” was set up. Based on the<br />
abundant strength of CAS in life sciences and<br />
biotechnology, this center will become an important<br />
transformation, integration and application platform of<br />
green agricultural biotechnology, its function includes<br />
technology incubation, technology integration, industrial<br />
demonstration and achievement transformation. Faced<br />
with the great challenges of national security, food<br />
security, ecological security, environmental security, this<br />
center will offer technological support to green agriculture<br />
and sustainable social development in China. Based on<br />
the comparative research on modern agriculture mode<br />
and biotechnology developing strategy abroad, and<br />
considering national condition of China, we can then put<br />
forward the Chinese theory system, technology system,<br />
policy system and developing strategy of modern<br />
agriculture.<br />
Moreover, goals of modern agriculture should include<br />
the following eight aspects: grain security, food quality<br />
security, biological security; environmental security;<br />
ecological security; energy security, economic security<br />
and social security. All of the aforementioned have to be<br />
based on biotech modern agriculture. We believe that to<br />
establish a biotech modern agriculture country, the<br />
priority development areas should include the following<br />
ones:<br />
(1) Anti-adversity farming (grain and economic crops)<br />
(2) Anti-adversity breeding industry (animal husbandry<br />
and fishery industry)<br />
(3) Microbial engineering (brewing and pharmacy<br />
industry)<br />
(4) Functional food engineering (refining process and<br />
artificial synthesis)<br />
(5) Frontier technology of biology (genomics, proteomics,<br />
metabolomics, gene networks, bioinformatics,<br />
biomedicine)<br />
(6) Biotechnology (biological cloning, transgenic<br />
technology, molecular breeding, enzyme engineering,
16118 Afr. J. Biotechnol.<br />
fermentation engineering, cell engineering)<br />
(7) Biological industry (biological fertilizer, biological<br />
pesticide, biological control, biological plastics, biological<br />
energy, biological pharmacy, biochemical engineering,<br />
bio-refining)<br />
(8) Land security and efficient utilization<br />
(9) Water security and efficient utilization<br />
(10) Environmental security and efficient utilization<br />
(11) Ecological security and conservation<br />
(12) Research on climate changes and agricultural<br />
disaster resistance<br />
(13) Agricultural economy and subsidy policy<br />
CONCLUSION<br />
Life sciences and biotechnology is one of the main areas<br />
which will fundamentally shape the human development<br />
in the 21 st century. It will change the traditional development<br />
mode, build green and renewable industry system,<br />
and significantly improve human health. China has a solid<br />
foundation and market space in this area, which is a<br />
great advantage for the development of biology industry.<br />
According to “the State Council decision on accelerating<br />
the development of new strategic industries” released on<br />
Chinese government website on October 18th, 2010,<br />
China plans to take about 10 years to foster new pillar<br />
industries of national economy, including biotechnology.<br />
FengFei, Minister of Industrial Economics Research<br />
Department of Development Research Center in China,<br />
analyzed that compared to other industries, biology<br />
industry is of more far-reaching strategic significance.<br />
Biotechnology can relieve the resource and environment<br />
pressure, improve human health, and moreover, improve<br />
the capacity of sustainable development. In fact, the<br />
importance of biology industry has long been noticed by<br />
senior leaders. As early as 2004, Ding Shisun, vice<br />
chairman of NPC Standing Committee, sent a letter to the<br />
government and recommended biotechnology industry as<br />
a national strategy. WenJiabao replied to this letter and<br />
indicated that development of biotechnology industry<br />
should be an emphasis of national economic, social<br />
development and scientific progress, and should also be<br />
included in the medium and long term planning.<br />
In 2007, China firstly issued “the Eleventh Five-Year<br />
Plan for Biology Industry”, while in 2009, General Office<br />
of the State Council issued “Notice on the Issuance of a<br />
Number of Policies for Promoting the Development of<br />
Biotechnology Industry”. Also in the same year, China<br />
held the world’s first international biology economy<br />
conference in Tianjin. National biology industry bases are<br />
continuously established everywhere. Besides, as China<br />
Bio-industry Convention held every year fueling the<br />
development of biology, biology economy is now<br />
vigorously developing in China. Moreover, in the recently<br />
issued “Recommendations of the Twelfth Five-Year Plan<br />
for National Economy and Social Development”, the<br />
government pointed out that the construction of modern<br />
agriculture should be accelerated. China’s agriculture is<br />
increasingly restricted by natural resources. Improving<br />
agricultural output only by means of increasing<br />
investment of natural resources is becoming more and<br />
more difficult. The fundamental solution depends on<br />
agricultural modernization with Chinese characteristics,<br />
which means speeding up agricultural mode transformation,<br />
promoting development of agricultural science<br />
and technology, improving agricultural production<br />
capacity, anti-risk ability and market competitiveness.<br />
In such a development background and historical conditions,<br />
there is no doubt that biology industry is entering<br />
a period of rapid development. In China, the development<br />
of biotechnology has close links with the agricultural<br />
modernization, which determines that biotechnology will<br />
become an area of strategic importance. Thus, it is easily<br />
acceptable that establishing a biotech modern agriculture<br />
country should become a national development goal of<br />
China.<br />
ACKNOWLEDGEMENTS<br />
This work was jointly supported by the Major Specialized<br />
Project of Transgenic Breeding New Species<br />
(2009ZX08009-079B), 973 Project (2010CB951501),<br />
the Important Direction Project (KSCX2-EW-N-02) of<br />
CAS, Innovation and Agricultural Poverty-helping<br />
Project, One Hundred-Talent Plan of the Chinese<br />
Academy of Sciences (CAS) and Yantai Science and<br />
Technology Development Project (2011016).<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16120-16127, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.410<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Review<br />
Food processing optimization <strong>using</strong> evolutionary<br />
algorithms<br />
Abimbola M Enitan 1 * and Josiah Adeyemo 2<br />
1 Department of Biotechnology and Food Technology, Durban University of Technology, P.O Box 1334,<br />
Durban, 4000, South Africa.<br />
2 Department of Civil Engineering and Surveying, Durban University of Technology,<br />
P.O Box 1334, Durban, 4000, South Africa.<br />
Accepted 12 October, 2011<br />
Evolutionary algorithms are widely used in single and multi-objective optimization. They are easy to use<br />
and provide solution(s) in one simulation run. They are used in food processing industries for decision<br />
making. Food processing presents constrained and unconstrained optimization problems. This paper<br />
reviews the development of evolutionary algorithm techniques as used in the food processing<br />
industries. Some evolutionary algorithms like genetic algorithm, differential evolution, artificial neural<br />
networks and fuzzy logic were studied with reference to their applications in food processing. Several<br />
processes involved in food processing which include thermal processing, food quality, process design,<br />
drying, fermentation and hydrogenation processes are discussed with reference to evolutionary<br />
optimization techniques. We compared the performances of different types of evolutionary algorithm<br />
techniques and suggested further areas of application of the techniques in food processing<br />
optimization.<br />
Key words: Evolutionary algorithms, optimization, food processing, multi-objective, constrained and<br />
unconstrained.<br />
INTRODUCTION<br />
Evolutionary algorithms (EAs) are computational-based<br />
biological-inspired optimization algorithms. They are<br />
stochastic searching methods, commonly used for<br />
solving non-differentiable, non-continuous and multimodal<br />
optimization problems based on Darwin’s natural<br />
selection principle. They imitate the process of natural<br />
evolution and are becoming important optimization tools<br />
for finding the global optimum solutions in several real<br />
world applications. EAs operate on a population of<br />
potential solutions, applying the principle of survival of the<br />
fittest to produce successful and better solution by means<br />
of evolutionary resembling operations (selection, reproduction<br />
and mutation), which are applied on individuals in<br />
a population (Ronen et al., 2002). EAs are widely used<br />
for single and multi-objective optimization in food<br />
processing. Modern day food processing involves a lot of<br />
*Corresponding author. E-mail: enitanabimbola@gmail.com.<br />
Tel: +27313732895. Fax: +27313732816.<br />
decision making resulting in many objective functions and<br />
constraints. EAs can generate Pareto optimal solutions<br />
for these models.<br />
Most manufacturing industries are in a continuous effort<br />
to increase their profits and reduce their production costs<br />
due to the strong competition that exists among them.<br />
Food processing as an aspect of biotechnology is<br />
recently facing remarkable challenges revolving around<br />
maximizing profit in a dynamic and an uncertain<br />
environment, while satisfying a variety of constraints such<br />
as quality of final product, financial, environmental, safety<br />
and human constraints. In response to such challenges,<br />
food industries are trying to improve process operations<br />
by <strong>using</strong> better technology. Processing optimization<br />
includes a performance evaluation function, control<br />
variables, constraints and a mathematical model (Evans,<br />
1982).<br />
Capitalizing on newly available technologies, the food<br />
industries have recently started <strong>using</strong> sophisticated<br />
technologies to improve, monitor, optimize and control<br />
food processing parameters such as moisture content,
temperature, concentration of microorganisms and<br />
nutrients (Rodríguez-Fernández et al., 2007). These<br />
techniques use expert knowledge to achieve a superior<br />
performance. In a situation where problem specific<br />
technique is not applicable due to unknown system<br />
parameters, the multiple local minima, or non-differentiable<br />
evolutionary algorithms (EAs) have the potential<br />
to overcome these limitations (Price, 1999), by <strong>using</strong><br />
mathematical model based techniques to make decisions<br />
about optimal production scenarios. In standard practice,<br />
simulation of multiple future production scenarios <strong>using</strong><br />
numerical model in solving a related optimization problem<br />
in food processing have been discussed (Boillereaux et<br />
al., 2003; Mariani et al., 2008).<br />
Many real-world problems have multiple often competing<br />
objectives. The optimization of food processing<br />
operations may not be an easy task due to complexities<br />
and variations in the raw materials (Vradis and Floros,<br />
1994). EAs as a class of direct search algorithms have<br />
proved to be an important tool for difficult search and<br />
optimization problems and have received increased<br />
interest during the last decade due to the ease way of<br />
handling multiple objective problems. A constrained<br />
optimization problem or an unconstrained multi-objective<br />
problem may in principle be two different ways to pose<br />
the same underlying problem and can be solved by EAs<br />
(Karaboga, 2004; Saputelli et al., 2004). EAs are of<br />
interest to finding solution to real world problems because<br />
they are proving robust in delivering global optimal<br />
solutions which help in resolving limitations encountered<br />
in traditional methods. Among the optimization techniques<br />
that have been applied to solving complex<br />
problems, which includes; linear programming (LP), nonlinear<br />
programme (NLP), dynamic programming (DP),<br />
stochastic dynamic programming (SPD) and heuristic<br />
programming such as genetic algorithm (GA), differential<br />
evolution (DE), shuffled complex evolution, fuzzy logic<br />
(FL), simulated annealing (SA), ant colony optimization<br />
(ACO), particle swarm optimization(PSO) and artificial<br />
neural networks (ANNs) (Sarker and Ray, 2009;<br />
Adeyemo, 2011; Matijasevic et al., 2010; Kennedy and<br />
Eberhart, 1995).<br />
DESCRIPTION OF SOME EVOLUTIONARY<br />
ALGORITHMS<br />
GAs are evolutionary search and optimization algorithms<br />
based on the mechanics of natural genetics and natural<br />
selection. They mimic natural evolution to making a<br />
search process in which solution is encoded as a string of<br />
binary digits. However, new GAs that use real numbers<br />
for encoding are now common. Genetic operators, such<br />
as selection, mutation and crossover are used to<br />
generate new solutions until a stopping criterion is<br />
satisfied (Babu and Munawar, 2007; Mohebbi et al.,<br />
2008). GA has been successfully used in science and<br />
Enitan and Adeyemo 16121<br />
engineering application to reach near-optimum solutions<br />
to a variety of problems (Gen and Cheng, 1996) since its<br />
introduction by Holland (1975). GA requires long process-<br />
sing time for a near-optimum solution to evolve.<br />
In an attempt to reduce the processing time and<br />
improve the quality of solutions, differential evolution (DE)<br />
was introduced by Storn and Price (Storn and Price,<br />
1995). DE is a population based algorithm like genetic<br />
algorithm <strong>using</strong> similar operators; crossover, mutation<br />
and selection for optimization problems. Unlike conventional<br />
GA that uses a binary coding for representing<br />
problem parameters, DE algorithm represents each<br />
variable in the chromosome by a real number. The<br />
principal difference between GA and DE is that GA relies<br />
on crossover, a mechanism of probabilistic and useful<br />
exchange of information among solutions to locate better<br />
solutions, while evolutionary strategies use mutation as<br />
the primary search mechanism (Godfrey and Babu,<br />
2004). DE selection process and its mutation scheme<br />
make DE self-adaptive. DE uses non-uniform crossover<br />
and tournament selection operators to create new<br />
solution strings. All solutions in DE have the same<br />
chance of being selected as parents without dependence<br />
on their fitness value. DE employs a greedy selection<br />
process (Karaboga, 2004). Some advantages of DE<br />
include its robustness, simple structure, ease of use,<br />
speed, quite selective in nonlinear constraint optimization<br />
including penalty functions, easily adaptable for integer<br />
and discrete optimization, and usefulness in optimizing<br />
multi-modal search spaces (Abbass et al., 2001; Strens<br />
and Moore, 2002). DE algorithm is a stochastic<br />
optimization method, which minimizes an objective<br />
function that can model the problem's objectives while<br />
incorporating constraints. It can be used for optimizing<br />
functions with real variables and many local optima<br />
(Pierreval et al., 2003). The performance of DE algorithm<br />
to that of some other well-known versions of genetic<br />
algorithm was compared and the simulation results<br />
showed that the convergence speed of DE is significantly<br />
better than genetic algorithms (Abbass et al., 2001;<br />
Strens and Moore, 2002; Karaboga, 2004).<br />
An artificial neural network (ANN) is a collection of<br />
interconnecting computational elements which simulates<br />
like neurons in biological systems. ANNs allow researchers<br />
to build mathematical models of neurons and<br />
mimic neural behaviour of complex real systems in a<br />
relatively simple manner. ANNs are trained in an efficient<br />
way and a model is developed to deal with the system’s<br />
intrinsic nonlinearities. It has the ability of relating the<br />
input and output parameters without any prior knowledge<br />
of the relationship between them (Chen and<br />
Ramaswamy, 2002; Goni et al., 2008). ANNs may be<br />
used to estimate or predict process behaviour without the<br />
need of a mathematical model, or a prediction equation<br />
associated to the physical problem (Ramesh et al., 1996).<br />
The complexity of the problem determines the number of<br />
neurons in a model. ANNs are widely used in pattern
16122 Afr. J. Biotechnol.<br />
recognition and pattern classification, diagnosis and<br />
control as well as function approximation and optimization<br />
(Bose and Liang, 1996).<br />
The introduction of fuzzy set theory by Zadeh (1975) to<br />
deal with problems in which a source of vagueness is<br />
involved has been reported. Fuzzy modeling is a powerful<br />
method, taking advantages of both scientific and heuristic<br />
modelling approaches. Fuzzy modelling utilizes the past<br />
data and expert knowledge convincingly than conventional<br />
methods. Fuzzy logic (FL) mimics human control<br />
logic. It can be built into anything <strong>from</strong> small, hand-held<br />
products to large computerized process control systems.<br />
It uses an imprecise but very descriptive language as a<br />
human operator to deal with input data (Huang et al.,<br />
2010). Although, the ability of fuzzy systems to solve<br />
different problems with various applications has been<br />
established, and an increasing interest in augmenting<br />
them with learning capabilities by soft-computing<br />
methods such as genetic fuzzy systems is developing<br />
(Liao et al., 2001).<br />
APPLICATION OF EVOLUTIONARY ALGORITHMS IN<br />
FOOD PROCESSING<br />
A good food processing model will combine the laws of<br />
heat, mass and momentum transfer with prediction<br />
equations for the physical properties of food, quality and<br />
safety kinetic models to reflect how the relevant state<br />
variables change with time and position when the food<br />
load is subjected to different processing conditions<br />
(Tijskens et al., 2001; Wang and Sun, 2003). Moreover,<br />
shortage and surplus of goods can lead to loss of income<br />
for many companies due to the short shelf-life of their<br />
products. Therefore, optimization techniques are necessary<br />
in food processing to incorporate the economic<br />
values for the processing and marketing of food.<br />
There is a need to maintain high product quality<br />
considering the uncertainties and fluctuations in<br />
consumer demands. This made food companies to be<br />
more concerned in improving very important parts of food<br />
processing operations. For example, an improved<br />
technique for drying, wetting, heating, cooling and<br />
freezing of foods are necessary (Doganis et al., 2006).<br />
Hence, model-based optimization is of extreme importance<br />
in modern food processing. Computer aidedengineering<br />
have significantly helped during the last<br />
decades in optimal control problems of food processing.<br />
Thermal processing function is an important food<br />
preservation method to inactivate bacterial spores of<br />
public health significance as well as food spoilage<br />
microorganisms in sealed containers of food, <strong>using</strong> heat<br />
treatments at temperatures well above the ambient<br />
boiling point of water in pressurized steam retorts<br />
(autoclaves) that are not detrimental to food quality and<br />
underutilize plant capacity (Simpson et al., 2003;<br />
Holdsworth and Simpson, 2007; Abakarov et al., 2009).<br />
The ability of GA to solve multi-objective problems<br />
makes them valuable tools for application in food<br />
processing systems. The various applications of GAs are<br />
computer-aided molecular design (Shunmugam et al.,<br />
2000), optimal design of xylitol synthesis reactor (Baishan<br />
et al., 2003), on-line optimization of culture temperature<br />
for yeast fermentation (Yüzgeç et al., 2009), optimization<br />
of ethanol production (Rivera et al., 2006; Guo et al.,<br />
2010) synthesis and optimization of non-ideal distillation<br />
system (Fraga and Senos, 1996) and estimation of heat<br />
transfer parameters in trickle bed reactors (González-<br />
Sáiz et al., 2008). Some other applications of genetic<br />
algorithm include determining the thermal deterioration of<br />
vitamin C in bioproduct processing such as<br />
concentration, drying and sterilization, semi-real-time<br />
optimization and control of fed-batch fermentation system<br />
(Koc et al., 1999; Maria et al., 2000; Zuo and Wu, 2000).<br />
Optimization of process variables <strong>using</strong> genetic<br />
algorithm during single screw extrusion cooking of a fish<br />
and rice flour blend was investigated by Shankar and<br />
Bandyopadhyay (2004). The objective was to optimize<br />
the process variables for each and all extrudate<br />
properties during cooking of a fish and rice flour blend.<br />
Second-degree regression equations were developed by<br />
response surfaces methodology (RSM) for screw speed,<br />
expansion ratio, water solubility index, bulk density,<br />
hardness, barrel temperature, feed moisture content and<br />
fish content as process variables, and optimized <strong>using</strong><br />
genetic algorithm. The results showed that under<br />
individual optimum process conditions, minimum bulk<br />
density and maximum water solubility index required high<br />
fish content of 41 to 45% and medium moisture content<br />
of about 40%, respectively and maximum expansion ratio<br />
and minimum hardness required a low fish content of 5%<br />
and feed moisture contents of 60 and 40%, respectively.<br />
Under common optimum process conditions, all four<br />
extrudate properties were optimized at a high fish content<br />
of 41 to 45% and medium moisture content of 40%. The<br />
study concluded that the common optimum process<br />
conditions predicted the properties of the end product<br />
more closely than the individual optimum conditions<br />
determined for each extrudate property.<br />
The efficiency of a nonlinear predictive control genetic<br />
algorithm was developed by Yuzgec et al. (2006) to<br />
determine the optimal drying profile for a biomass drying<br />
process by <strong>using</strong> a model of a batch fluidized bed drying<br />
process of the baker’s yeast that had been developed by<br />
Yüzgeç et al. (2004). The objective of this work was to<br />
develop a control procedure for a nonlinear drying<br />
process in order to increase the quality of product at the<br />
end of the process, decrease the energy consumption<br />
during drying and reduce the cost of the process. The<br />
simulation results showed that the performance of the<br />
drying process is an important factor in the food industry<br />
to enhance the manufacturing quality and decrease the<br />
energy consumption. The drying time and sometimes, the<br />
cost of the process can be reduced. Similar works that
incorporate genetic algorithm-based optimization for the<br />
predictive control have been reported in the literature<br />
(Quirijns et al., 2000; Na et al., 2002; Potocnik and<br />
Grabec, 2002; Haber et al., 2004). Mankar et al. (2002)<br />
studied an on-line optimization control of bulk<br />
polymerization of methyl methacrylate <strong>using</strong> GA to<br />
compute temperature in real time for a period of 2 min.<br />
Artificial neural networks (ANNs) and genetic algorithm<br />
(GA) mimic different aspects of biological information<br />
processing for data modelling and media optimization.<br />
The evaluation of ANN supported GA for optimization<br />
problems in food science, environmental biotechnology,<br />
and bioprocess engineering have been well established<br />
(Baishan et al., 2003). ANN–GA based approach was<br />
used for simultaneous maximization of biomass and<br />
conversion of pentafluoroacetophenon with<br />
Synechococcus PCC 7942 (Franco-Lara et al., 2006) and<br />
optimization of fermentation medium for the production of<br />
xylitol <strong>from</strong> Candida mogii (Baishan et al., 2003; Desai et<br />
al., 2006). A hybrid methodology comprising the Plackett-<br />
Burman (PB) design method, ANN based modelling and<br />
GA was developed to enhance the optimization of media<br />
and inoculums volume for the exopolysaccharides<br />
production by Lactobacillus plantarum isolated <strong>from</strong> the<br />
fermented Eleusine coracan. PB was used to identify the<br />
most three influential media components. ANN was<br />
generated for approximating the non-linear relationship<br />
between the fermentation operating variables and the<br />
yield. Then the input parameters of ANN model was<br />
optimized <strong>using</strong> the GA based process optimization to<br />
obtain the maximum exopolysaccharides yield in the<br />
batch fermentation (Desai et al., 2006). The optimization<br />
of hydantoinase production <strong>from</strong> Agrobacterium<br />
radiobacter, production of lipase <strong>from</strong> a mixed culture and<br />
glucansucrase production <strong>from</strong> Leuconostoc dextranicum<br />
NRRL B-1146 by ANN–GA model <strong>using</strong> RSM based<br />
data was carried out by Nagata and Chu (2003), Haider<br />
et al. (2008) and Singh et al. (2008) respectively.<br />
Optimization results as shown in the literature, review the<br />
effectiveness of <strong>using</strong> hybrid algorithms.<br />
Kovarova-Kovar et al. (2000) studied the optimization<br />
of fed-batch process for the riboflavin production. Later,<br />
thermal inactivation of glucoamylase and optimization of<br />
catalytic reaction of pancreas lipase was studied by<br />
Bryjak et al. (2004), Manohar and Divakar (2005),<br />
respectively. Chen and Ramaswamy (2002) developed<br />
an algorithm that combines the mathematical model with<br />
the optimization of variable retort temperature thermal<br />
processing for conduction-heated foods <strong>using</strong> ANNs-GA<br />
hybrid. A year later, Morimoto et al. (2003) presented the<br />
dynamic optimization of a heat treatment for minimizing<br />
water losses in tomatoes during storage. An artificial<br />
neural network and genetic algorithm were used to<br />
determine the optimal processing conditions for spraydried<br />
whole milk powder processing by Koc et al. (2007).<br />
The researchers developed a general regression neural<br />
network model to predict the responses of lactose<br />
Enitan and Adeyemo 16123<br />
crystallinity and free fat content <strong>from</strong> the processor screw<br />
speed, process temperature, milk powder feed rate and<br />
lecithin addition rate during the evaluation of fitness<br />
function of a genetic algorithm optimization <strong>using</strong><br />
response surfaces experimental design methodology.<br />
The genetic algorithm was used to determine both the<br />
individual and common optimal operating conditions for<br />
the whole milk powder process. It was demonstrated that<br />
the optimal conditions for spray-dried whole milk powder<br />
processing variables to produce maximum free fat<br />
content, maximum lactose crystallinity and minimum<br />
average particle size by <strong>using</strong> genetic algorithms and<br />
neural networks are obtainable. Izadifar and Jahromi<br />
(2007) used the experimental data set <strong>from</strong> a vegetable<br />
oil pilot plant reactor to develop a neural network model<br />
for a vegetable oil hydrogenation process. The neural<br />
network was used as a predictor to evaluate a<br />
combination of reaction conditions during the genetic<br />
algorithm optimization for the minimum isomer and<br />
maximum cis-oleic acid. The same year, Erenturk and<br />
Erenturk (2007) studied the drying kinetics of carrot <strong>using</strong><br />
genetic algorithm and ANNs hybridization.<br />
Applications of ANNs in food process modelling, control<br />
and quality evaluation of food products have been<br />
surfacing since 1990. Artificial neural networks have been<br />
applied in the twin-screw extrusion cooker control (Linko<br />
et al., 1992), prediction of dough rheological properties<br />
(Ruan et al., 1997) and meat quality prediction (Yan et<br />
al., 1998). More recently, ANNs have been receiving<br />
greater attention in drying technologies (Kaminski et al.,<br />
1998; Sreekanth et al., 1998; Chen et al., 2000),<br />
fermentation (Aires-De-Sousa, 1996), food rheology<br />
(Ruan et al., 1995) and thermal processing (Sablani et<br />
al., 1997a, b). Other applications of ANNs in food<br />
processing report include baking (Cho and Kim, 1998)<br />
and post harvesting (Morimoto et al., 1997a, b),<br />
Boillereaux et al. (2003) determine the thermal<br />
properties of the gelatin gel during thawing <strong>using</strong> artificial<br />
neural networks. Mittal and Zhang (2000) developed a<br />
feed forward neural network to predict the freezing and<br />
thawing time of food products with simple regular shapes.<br />
In a similar study by Goni et al. (2008), they optimized the<br />
trial and error definition of the net parameters. The<br />
objective of their work was to develop and to validate<br />
three neural networks techniques; one for the prediction<br />
of freezing times, another one for the prediction of<br />
thawing times and a third one for both freezing and<br />
thawing times of foods of any shape and composition<br />
based exclusively on reported experimental data. The<br />
results showed that the developed ANNs were efficient<br />
for the estimation of freezing and thawing times of foods<br />
of all types, shapes, sizes and compositions and the<br />
developed genetic algorithm was also useful for<br />
improving the generalization ability of the neural<br />
networks.<br />
Rodríguez-Fernández et al. (2007) proposed an<br />
integrated two-step identification model for air-drying of
16124 Afr. J. Biotechnol.<br />
food. Structural identifiability analysis for model methods<br />
was carried out to improve the efficiency and robustness<br />
of model parameters. Drying of tomato <strong>using</strong> artificial<br />
neural network modelling was presented by<br />
Movagharnejad and Nikzad (2007). It was reported that<br />
the ANN model describes the drying behaviour of tomato<br />
more accurately than empirical correlations.<br />
Considerable work on the variable retort tempera-tures<br />
(VRT) to improve the quality of canned food and<br />
significantly reduce processing times in comparison to<br />
traditional constant retort temperature (CRT) processing<br />
has been reported in the literature (Teixeira et al., 1969,<br />
1975; Babu and Chaurasia, 2003; Banga et al., 2003).<br />
Chen and Ramaswamy (2002) searched the optimal<br />
variable retort temperature (VRT) thermal processing<br />
<strong>using</strong> coupled neural networks and genetic algorithm<br />
model for heated foods to identify optimal processing<br />
conditions that will reduce surface cook value and the<br />
process time to maximize the final nutrient retention of a<br />
conduction-heated canned food.<br />
Olmos et al. (2002) studied the compromise between<br />
the final product quality and total process drying time of<br />
rice. Erdogdu and Balaban (2003) studied the<br />
optimization of thermal processing of canned foods <strong>using</strong><br />
several objective functions. On the other hand, very little<br />
attempts have been made to solve the multi-objective<br />
optimization problem of nutrient destruction by the action<br />
of heat during the thermal sterilization of foods, although<br />
it is generally accepted that microbiological safety must<br />
be the primary objective but foods are sometimes overprocessed<br />
especially canned foods (Fryer and Robbins,<br />
2005). To this effect, Sendín et al. (2006) and (2010)<br />
recently proposed and successfully applied novel multicriteria<br />
optimization method to the thermal processing of<br />
foods, where the minimization of total process time and<br />
the maximization of the retention of several nutrients and<br />
quality factors were simultaneous considered. The new<br />
strategy has proved to be efficient and robust when<br />
applied to the non-linear dynamic model considered.<br />
Ainscough and Aronson (1999) compared ANNs to linear<br />
regression for studying the same effects on yogurt. ANNs<br />
have been applied successfully to problems concerning<br />
sales of food products (peanut butter and ketchup), such<br />
as predicting the impact of promotional activities and<br />
consumer choice on the sales volumes at retail store<br />
(Doganis et al., 2006). They were found to perform better<br />
than linear models.<br />
Since the development of differential evolution (DE)<br />
algorithm, it has been successfully applied to solve<br />
several optimization problems of chemical and biological<br />
processes (Chiou and Wang, 2001; Lu and Wang, 2001;<br />
Cheng and Wang, 2004; Liu and Wang, 2010). Other<br />
applications include; the fuzzy-decision making problems<br />
of fuel ethanol production (Wang et al., 1998),<br />
fermentation process (Chiou and Wang, 1999; Wang and<br />
Cheng 2001), other engineering applications by Babu<br />
and Angira, 2002; Babu and Jehan, 2003; Babu, 2004,<br />
2007; Angira and Babu, 2006). These studies concluded<br />
that DE takes less computational time to converge<br />
compared to the existing techniques without<br />
compromising the accuracy of the parameters being<br />
estimated.<br />
Sarimveis and Bafas (2003) proposed fuzzy model<br />
predictive control of non-linear processes <strong>using</strong> GA.<br />
Peroni et al. (2005) improved the simulation-based<br />
approximate dynamic programming method for optimal<br />
control of a fed-batch process and the optimal feed rate<br />
profile under varying initial conditions by a simulatedbased<br />
control strategy. A recurrent neurofuzzy network<br />
based modeling and optimal control for a fed-batch<br />
process was presented by Zhang (2005). Perrot et al.<br />
(1998) combined fuzzy and genetic methods for optimal<br />
control of the microfiltration of sugar products. In this<br />
study, validation of the controller was carried out through<br />
simulation <strong>using</strong> a neural network model of the process<br />
and parameters of fuzzy controller were optimized off-line<br />
by GA. Petermeier et al. (2002) proposed a hybrid<br />
structure for modeling of the fouling process in a tubular<br />
heat exchanger for the dairy industry based on a<br />
combination of expert knowledge and parameterized<br />
equations in a fuzzy model. The ability of a fuzzy<br />
inference system to modeling and simulation of the cross<br />
ultra-filtration process of milk and to predict permeate flux<br />
and total hydraulic resistance under different hydrodynamics<br />
parameters and operating time was studied by<br />
Sargolzaei et al. (2008).<br />
The optimization of multiproduct batch plants design<br />
problem for protein production <strong>using</strong> fuzzy multiobjective<br />
algorithm concepts was carried out by Dietz et al. (2008).<br />
The developed model provided a set of scenarios that<br />
constituted a very promising framework for taking<br />
imprecision into account in new product development<br />
stage and in making decision. Kiranoudis and Markatos<br />
(2000) considered the multi-objective design of food<br />
dryers <strong>using</strong> a static mathematical model. The authors<br />
minimized simultaneously an economic measure and the<br />
colour deviation of the final product. A similar work was<br />
presented by Koc et al. (1999). Fuzzy logic was used in<br />
the real–time control of a spray–drying of whole milk<br />
powder processing. The objective was to increase the<br />
free fat content of the whole milk product and consistent<br />
colour. The algorithm used controlled the process at the<br />
desired power consumption and provided whole milk<br />
products with the desired colour values within 3.0 unit<br />
deviations. Also, the free fat content was over 95%, and<br />
lactose was in crystalline form in the final dry milk<br />
product.<br />
CONCLUSION<br />
This paper reviews the computational-based optimization<br />
technique algorithms that are becoming promising global<br />
optimization tools for major real world applications in
finding global optimum solutions to food technology<br />
problems. New hybrid optimizers have been successfully<br />
developed to solve various constrained and unconstrained<br />
multi-objective optimization problems for modern food<br />
processing optimization. The paper reviewed some of the<br />
successful applications of optimization algorithms in the<br />
food processing industry. The successful applications of<br />
EAs suggested that EAs will have increasing and<br />
encouraging impact for solving real world problems in the<br />
manufacturing industry in the future. Therefore, to<br />
increase the ability of EAs for solving food processing<br />
problems, further research interest to exploit the<br />
abundant expert knowledge and deal with high dimensionality<br />
common to real world problems are needed.<br />
The final quality and marketing of food products<br />
depend on their thermal treatment history. Due to this<br />
fact, application of new techniques for food treatment<br />
processes especially for the optimal treatment policies for<br />
the control of food products and processes regarding<br />
microbiological safety and final quality of food is very<br />
important. Therefore, fundamental research on the<br />
design, modelling, simulation and evaluation of different<br />
thermal food process scenarios and heating strategies is<br />
crucial. Recent interests are directed towards the<br />
simultaneous estimation of the thermal conductivity and<br />
heat capacity by means of single or dual heat probe<br />
methods to measure the temperature response in the<br />
food products.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16128-16137, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1456<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Maize defensin ZmDEF1 is involved in plant response<br />
to fungal phytopathogens<br />
Baosheng Wang, Jingjuan Yu, Dengyun Zhu and Qian Zhao*<br />
State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193,<br />
P. R. China.<br />
Accepted 21 September, 2011<br />
A seed-specific cDNA Zea mays defensin 1 (ZmDEF1), which encodes a novel plant defensin, was<br />
isolated <strong>from</strong> maize (Zea mays L. cv. NongDa108). ZmDEF1 contains a predicted signal peptide of 31<br />
amino acids at the N-terminus domain and a mature peptide of 49 amino acids with a calculated<br />
molecular mass of 5.4 kDa. Expression data demonstrated that this gene is expressed specially in<br />
immature and mature seeds. In contrast to defensins <strong>from</strong> other plant species, the expression of<br />
ZmDEF1 cannot be detected in seedlings, even under induction of methyl jasmonate (MeJA) and<br />
abscisic acid (ABA). The recombinant ZmDEF1 displays an inhibitive activity against the fungal<br />
pathogen, Phytophthora parasitica var. nicotianae. Ectopic expression of the ZmDEF1 gene under the<br />
control of the cauliflower mosaic virus (CaMV) 35S promoter conferred enhanced tolerance against P.<br />
parasitica in transgenic tobacco plants.<br />
Key words: Antifungal peptides, Phytophthora parasitica, plant defensin, seed specific, transgenic tobacco.<br />
INTRODUCTION<br />
Plant defensins are a family of cysteine-rich peptides with<br />
a specific three-dimensional structure stabilized by four<br />
intramolecular disulfide bonds (García-Olmedo et al.,<br />
1998; Thomma et al., 2002). These small proteins are<br />
comprised 45 to 54 amino acids and found in many<br />
monocotyledonous and dicotyledonous plants (Meyer et<br />
al., 1996), including wheat (Koike et al., 2002), barley<br />
(Mendez et al., 1990), spinach (Segura et al., 1998), pea<br />
(Almeida et al., 2000), radish (Terras et al., 1992) and<br />
sunflower (Urdangarin et al., 2000). Plant defensins were<br />
isolated first <strong>from</strong> seeds (Thomma et al., 2002), but have<br />
also been identified in other tissues including leaves<br />
(Kragh et al., 1995), pods (Chiang and Hadwiger, 1991),<br />
tubers (Moreno et al., 1994), fruit (Aluru et al., 1999),<br />
roots (Sharma and Lönneborg, 1996), bark (Wisniewski<br />
et al., 2003) and floral tissues (Gu et al., 1992). Plant<br />
defensins can be divided into two major classes<br />
according to the structure of the precursor proteins<br />
*Corresponding author. E-mail: zhaoqian@cau.edu.cn. Tel: +86-<br />
10-62733333. Fax: +86-10-62732012.<br />
Abbreviations: MeJA, Methyl jasmonate; ABA, abscisic acid.<br />
predicted <strong>from</strong> cDNA clones (Lay et al., 2003). The<br />
precursor proteins of Class I are composed of an<br />
endoplasmic reticulum (ER) signal sequence and a<br />
mature defensin domain. The Class II defensins are<br />
having larger precursors with C-terminal prodomains of<br />
about 33 amino acids. To date, these Class II defensins<br />
have only been found in solanaceous species (Milligan et<br />
al., 1995; Brandstadter et al., 1996).<br />
Most plant defensins exhibit antifungal activity against<br />
various plant pathogens, especially a broad range of<br />
fungi (Broekaert et al., 1997; Osborn et al., 1995). It is<br />
generally accepted that plant defensins act at the level of<br />
the plasma membrane, similar to many other antimicrobial<br />
peptides. Radish seed antimicrobial protein 2 (Rs-<br />
AMP2) was shown to bind to the sphingolipid glucosylceramides<br />
of fungal membranes, ca<strong>using</strong> inhibition of<br />
fungal growth by membrane permeabilization (Thevissen<br />
et al., 1996; Mello et al., 2011). However, the precise<br />
mechanism of protection for most defensins remains<br />
unclear. To date, plant defensins have been transformed<br />
into several plants to enhance resistance to agriculture<br />
pathogens. Constitutive expression of Medicago sativa<br />
defensin (alfAFP) in potato clearly enhanced resistance<br />
of potato plants to the fungus Verticillium dahliae (Gao et<br />
al., 2000). Transgenic tobacco constitutively expressing
the radish defensin Rs-AFP2 showed a sevenfold<br />
reduction in lesions of the untransformed plants upon<br />
infection with the fungal leaf pathogen Alternaria longipes<br />
(Terras et al., 1995).<br />
We report here on the isolation and characterization of<br />
ZmDEF1, which encodes a defensin <strong>from</strong> Zea mays. The<br />
recombinant ZmDEF1 protein, expressed in the yeast,<br />
showed in vitro antifungal activity, and ectopic expression<br />
of the ZmDEF1 gene in tobacco conferred enhanced<br />
tolerance against Phytophthora parasitica. These results<br />
indicate that ZmDEF1 is possibly involved in fungi<br />
resistance.<br />
MATERIALS AND METHODS<br />
Plant materials and fungal strains<br />
Z. mays L. cv. NongDa108 was provided by Professor Qi-Feng Xu,<br />
China Agriculture University. Nicotiana tabacum var. Xanthi nc. was<br />
used for transformation. Fungal strain P. parasitica var. nicotianae<br />
was provided by Professor Yi Shi, Tobacco Research Institute of<br />
Chinese Academy Agricultural Sciences.<br />
Cloning of the ZmDEF1 gene<br />
RNA was isolated <strong>from</strong> Z. mays seeds by TRIzol method according<br />
the instructions (Invitrogen, USA) and treated with DNase I enzyme<br />
(TaKaRa, Japan). A 50 µL reverse transcription reaction was<br />
prepared consisting of 2 µg total RNA, 1 × reverse transcription<br />
buffer, 1 mM oligo dT18 primer, 1 mM dNTP, 2 U RNasin and 2 U M-<br />
MLV. The reaction was incubated for 60 min at 42°C prior to PCR<br />
reactions. A sense primer, Def1 [5′-GATGGCKCYGTCTCGWCG-<br />
3′], and an antisense primer, Def2 [5′-<br />
ACTAGCAKAYCTTCTTGCAGA-3′] were designed based on<br />
nucleotide sequence of the Triticum aestivum defensin (GenBank<br />
accession number AB089942). Def1 and Def2 were used in PCR<br />
amplification with 1 μL cDNA reaction mixture earlier obtained as<br />
template. Amplification conditions were: 95°C pre-denaturation for 5<br />
min, 30 cycles: 95°C for 1 min, 51°C for 1 min and 72°C for 1 min,<br />
then 10 min at 72°C. The PCR products were recovered <strong>from</strong> 0.8%<br />
agarose gel. The purified fragment was cloned into pMD 18-T<br />
vector (TaKaRa, Japan), named p18T-ZmDEF and the nucleotide<br />
sequence of the cDNA insert was determined by sequencing<br />
(Sangon, China).<br />
Treatments of seedlings with MeJA and ABA<br />
Maize seeds were preconditioned in sterile distilled water for two<br />
days in darkness at 28°C and then grown in an artificial climate box<br />
under a white fluorescent lamp on a 16 h-light/8 h-dark cycle at<br />
27°C. Maize seedlings with three leaves were sprayed with 100μM<br />
MeJA (Sigma, USA) or H2O as control. For the ABA treatments, the<br />
seedlings were placed in flasks filled with distilled water (control) or<br />
100 μM ABA (Sigma, USA) for 6 h. ABA and MeJA were added as<br />
stock (100 mM to give a final concentration of 100 μM) in ethanol,<br />
and an equal amount of ethanol was added to a control sample.<br />
After treatments, the second fully expanded leaves were picked for<br />
total RNA extraction and RT-PCR.<br />
Expression of ZmDEF1 in Pichia pastoris<br />
The coding sequence of the ZmDEF1 mature peptide was obtained<br />
by PCR amplification with a forward primer D5 incorporating an<br />
Wang et al. 16129<br />
EcoRI site (5′-CGGAATTCATGAGGCACTGCCTGTCGCAGAG-3′)<br />
and a reverse primer D3 with a NotI site (5′-<br />
TAGCGGCCGCATCTCAGTGGTGG-3′). The amplified product was<br />
digested with EcoRI/NotI and ligated into EcoRI and NotI sites of<br />
the vector pPIC9K (Invitrogen USA). This expression plasmid was<br />
named pPIC9K-ZmD. The identity of the insert was verified by<br />
sequencing. The vector pPIC9K-ZmD was linearized with SacI and<br />
introduced into the P. pastoris strain GS115 according to the<br />
manufacturer’s instructions (Invitrogen, USA). P. pastoris cells<br />
containing ZmEDF1 were grown at 30°C for 16 h in 100 ml BMGY<br />
medium (2% Peptone, 1% yeast extract, 1.34% yeast nitrogen base<br />
without amino Acids (YNB), 0.5% Biotin, 1% glycerol and 100 mM<br />
potassium phosphate). The supernatant was removed by<br />
centrifugation at 10,000 × g for 5 min, and the pellet was resuspended<br />
in 1000ml BMMY (2% Peptone, 1% yeast extract,<br />
1.34% YNB, 0.5% Biotin, 0.5% Methanol and 100 mM potassium<br />
phosphate) medium, followed by shaking at 30°C for 120 h.<br />
Methanol was added to a final concentration of 0.5% and aliquots<br />
were collected for ZmDEF1 content analysis every 12 h.<br />
Tricine-SDS-PAGE and Western blot<br />
Crude protein was precipitated by adding acetone to a final<br />
concentration of 20%, then homogenized in 3% SDS, 1.5%<br />
mercaptoethanol, 30% glycerol, 0.01% coomassie blue G-250, 30<br />
mM Tris-HCl (pH 7.0), and heated at 100°C for 5 min. Twenty<br />
microliters of total protein were loaded into each lane and separated<br />
by tricine sodium dodecyl sulfate polyacrylamide gel electrophoresis.<br />
The electrophoresis was carried out according to the<br />
method of Schägger and Von Jagow (1987) and <strong>using</strong> a Bio-Rad<br />
Mini Electrophoresis system per the manufacturer’s instructions.<br />
After electrophoresis, the separated proteins were transferred onto<br />
nitrocellulose membranes <strong>using</strong> an Electro Trans-blot apparatus<br />
(Bio-Rad, USA). The nitrocellulose membranes were blocked for 30<br />
min in TBS (20 mM Tris-HCl, pH 7.5, 150 mM NaCl) with 5% BSA.<br />
The blots were incubated for 1 h with mouse anti-His Tag antibody<br />
in TBS containing 5% BSA, and then subsequently with alkalinephosphatase-conjugated<br />
goat anti-mouse IgG antibody (Promega,<br />
USA) for 1 h. The color reaction was performed on the blots <strong>using</strong><br />
nitroblue tetrazolium (NBT) and 5-bromo-4-chloro-3-indolyl<br />
phosphate (BCIP) in a buffer containing 0.1 M NaHCO3 and 1.0 mM<br />
MgCl2, pH 9.8.<br />
Purification of ZmDEF1<br />
A three day growth culture was harvested by centrifugation at<br />
14,000 × g for 30 min, the supernatant was collected and protein<br />
content precipitated by adding ammonium sulfate at a rate of 1<br />
g/min to 90% of saturation. The individual precipitated fractions<br />
were collected by centrifugation at 14,000 × g for 30 min and<br />
dissolved in 10 ml of PBS. The majority of ammonium sulfate was<br />
removed by dialyzation for 24 h. Purification of the fusion protein,<br />
tagged with hexa-His at the C-terminus, was carried out following<br />
the Ni-NTA purification system for proteins tagged with histidines<br />
(Invitrogen, USA). The fusion proteins were eluted by imidazolecontaining<br />
buffer and dialyzed against 100 mM phosphate buffer<br />
(pH 7.5), and then stored at -20°C until used for antifungal activity<br />
assay.<br />
In vitro antifungal activity assays<br />
P. parasitica var. nicotianae was cultured on potato dextrose agar<br />
(PDA) medium plates at 25°C for 8 days. The pathogen was then<br />
inoculated into millet medium and placed at 28°C for 20 days and<br />
the resulting mycelium was rinsed with sterile water and then
16130 Afr. J. Biotechnol.<br />
Figure 1. Nucleotide and deduced amino acid sequences of ZmDEF1 cDNA. The deduced amino acid sequence is shown below the<br />
cDNA sequence. The putative signal peptide is underlined. The putative translation initiation and stop codons are in bold.<br />
filtered with pledget. The spore suspensions were added into unset<br />
PDA medium and then a 5 mm disc was removed <strong>from</strong> the plate.<br />
Solution of the fusion ZmDEF1 was added into the 5 mm hole, with<br />
PBS used as a negative control. The plates were placed in the dark<br />
at 25°C for three days.<br />
Generation of tobacco lines expressing ZmDEF1<br />
Plasmid p18T-ZmDEF was digested with HincII and SacI and the<br />
insert was cloned into the pROK219. The CaMV 35S::ZmDEF1<br />
expression cassette was digested with HindIII and EcoRI and<br />
cloned into the pBI121 binary vector and sequenced. The LBA4404<br />
strain of Agrobacterium tumefaciens was used to transform tobacco<br />
<strong>using</strong> the leaf disk transformation method (Horsch et al., 1985).<br />
After regeneration on kanamycin selective medium, transformed<br />
tobacco lines were checked for the presence of the transgene by<br />
PCR.<br />
Northern analysis<br />
Total RNA was isolated <strong>from</strong> shoot tissue of tobacco <strong>using</strong> TRIzol<br />
reagent (Invitrogen, USA). 20 µg of total RNA was denatured and<br />
loaded into a 1.6% formaldehyde-agarose gel, then subsequently<br />
transferred onto a nylon membrane. Equal loading of the samples<br />
was confirmed by ethidium bromide staining. The membrane was<br />
hybridized to a 32 P-labeled probe in a hybridization solution<br />
containing 0.5 M Na2HPO4 pH 7.2, 1 mM EDTA, 1% BSA and 7%<br />
SDS at 65°C overnight. The template for the probe was a full-length<br />
245 bp ZmDEF1 cDNA. After hybridization, the filterate was washed<br />
twice with 2 × SSC (1 × SSC is 0.15 M NaCl, 15 mM sodium citrate)<br />
containing 0.1% SDS at 65°C for 20 min each, once with 0.2 × SSC<br />
containing 0.1% SDS at 65°C for 10 min, and then exposed to X-ray<br />
film at -70°C for 24 h.<br />
Detached leaf bioassay<br />
For the leaf bioassay, detached leaves <strong>from</strong> mature transgenic and<br />
control plants (transformed with an empty vector) were placed in<br />
Petri dishes containing wet filter papers. The leaves were wounded<br />
by gently pricking the abaxial side of the leaves several times with a<br />
sterile needle. Then 20 μL of fungal suspension was introduced to<br />
the wounded area and incubated at 28°C for 10 days.<br />
Infection of tobacco plants with blast fungus<br />
The seeds of T1 transgenic tobacco were germinated on MS<br />
medium containing 100 µg/ml kanamycin. The resistant plants were<br />
planted in pots containing plant growth medium and grown in the<br />
greenhouse at 25 to 28°C and relative humidity ranging <strong>from</strong> 30 to<br />
60% under natural daylight for approximately two months. Millet<br />
with P. parasitica was embedded near the tobacco roots in the pots.<br />
The inoculated plants were placed at 30°C with 100% relative<br />
humidity for 14 days.<br />
RESULTS<br />
Isolation and analysis of the ZmDEF1 gene<br />
The ZmDEF1 cDNA isolated <strong>from</strong> Z. mays was 245 bp in<br />
length, consisting of a single open reading frame. The<br />
ORF encodes a polypeptide of 80 amino acids consisting<br />
of a predicted signal peptide of 31 amino acids at the Nterminus<br />
domain and a mature peptide of 49 amino acids<br />
with a calculated molecular mass of 5.4 kDa and a pI of<br />
8.61. The nucleotide and predicted amino acid sequence<br />
of ZmDEF1 is shown in Figure 1. Several plant defensins<br />
of previous studies were compared with ZmDEF1 to<br />
confer the cleavage site between the signal peptide and<br />
mature ZmDEF1 (data not shown). The presence of the<br />
signal peptide in the primary translation product<br />
suggested that ZmDEF1 is destined to the cell wall or the<br />
vacuole, locations where many defense-related proteins<br />
are found.<br />
The alignment of ZmDEF1 with other plant defensins<br />
is shown in Figure 2. ZmDEF1 shares significant identity<br />
with Tad1 (63%), EGAD1 (59%) and SD2 (59%), but low<br />
identity with Nad1 (36%), alfAFP (35%), Rs-AFP2 (30%),<br />
Dm-AMP1 (28%) and Psd1 (26%). ZmDEF1 contained<br />
the well conserved eight cysteine residues, which play an<br />
important role in protein stabilization (Figure 2). Other<br />
conserved residues such as Ser8, an aromatic residue at<br />
position 11, Gly13, Glu29 and Gly34 were also found
Wang et al. 16131<br />
Figure 2. Amino acid sequence alignment of mature plant defensins <strong>from</strong> several plants. Comparison of the<br />
deduced mature ZmDEF1 amino acid sequence with those of other plant defensins. Conserved residues are<br />
presented in black boxes, partially conserved residues in gray boxes, while the defensin consensus sequence is<br />
shown below the alignment. The disulfide bond connectivities are shown below the consensus sequence by<br />
connecting lines. The sequences were aligned <strong>using</strong> the CLUSTALW2 online<br />
(http://www.ebi.ac.uk/Tools/msa/clustalw2/).<br />
Figure 3. RT-PCR expression analysis of ZmDEF1 in different organs of Zea mays. The specific products of ZmDEF1 are detected<br />
in immature (IS) and mature seeds (MS), but not in roots (R), stems (S), leaves (L) and flowers (F). The tubulin gene exhibiting<br />
constitutive expression was used as a control.<br />
in the sequence (Figure 2). According to the analysis of<br />
sequence performed in this work, ZmDEF1 can be<br />
grouped with the Class I defensins.<br />
In addition, to analyze the ZmDEF1 expression<br />
pattern, RT-PCR was performed with total RNA samples<br />
extracted <strong>from</strong> different maize tissues. The data show<br />
that ZmDEF1 transcripts were only detected in immature<br />
and mature seeds, but not in roots, stems, leaves or<br />
flowers (Figure 3). Furthermore, the result that no<br />
ZmDEF1 transcripts could be detected in seedlings even<br />
under induction by MeJa and ABA (data not shown),<br />
indicates the ZmDEF1 may play a defensive role only<br />
during seed development.<br />
Expression of ZmDEF1 in P. pastoris<br />
In the P. pastoris expression system, a strain that<br />
contains multiple integrated copies of an expression<br />
cassette can sometimes yield more heterologous protein<br />
than single-copy strains (Cereghino and Cregg, 2000).<br />
For screening His + recombinants with multiple inserts, all<br />
the clones were incubated in 96 well microtiter plate for<br />
three times passage until they were all at the same cell<br />
density. The cultures were then spotted on YPD plates<br />
containing G418 at grads concentration (Figure 4). The<br />
recombinants that demonstrated resistance at 4.0 mg/ml<br />
G418 were analyzed for the presence of ZmDEF1 by<br />
PCR. Six recombinants were recovered <strong>from</strong> 224<br />
colonies obtained originally.<br />
Antifungal activity assays in vitro<br />
In order to study the antifungal activity of ZmDEF1, the<br />
Pichia Expression Kit (invitrogen, USA) was used.<br />
ZmDEF1 was produced as a fusion protein with a 6×His<br />
tag at C-terminal. The total size of the predicted fusion<br />
protein is 7.6 kDa. This roughly corresponds to the<br />
molecular size of the expressed ZmDEF1 detected by<br />
Western blot (Figure 5). The fusion protein expression in<br />
Pichia was detected every 12 h. The accumulation of
16132 Afr. J. Biotechnol.<br />
Figure 4. Screening for yeast recombinants containing multiple copies of ZmDEF1. The cultures were grown on YPD plates<br />
containing G418 at grads concentration. A to F shows the G418 final concentration at 0.25, 0.5, 1.0, 2.0, 3.0 and 4.0 mg/ml,<br />
respectively.<br />
Figure 5. Immunoblot detection of ZmDEF1 expression in P. pastoris. Detection of the fusion protein ZmDEF1 expressed in P.<br />
pastoris <strong>using</strong> the anti-His antibody. Denaturing Tricine-SDS-PAGE followed by immunoblotting was performed on the total protein<br />
extracts <strong>from</strong> 1 ml supernatant. P. pastoris/pPIC9K was used as a negative control. Pre-stained protein standards (MW) were<br />
included for estimation of the molecular mass (kDa). The accumulation of ZmDEF1 was detectable after 24 h induction, reaching a<br />
maximum after 60 h induction.
ZmDEF1 was detectable after 24 h, reaching a maximum<br />
after 60 h and maintained up to the 96 h. After 108 h, the<br />
level of ZmDEF1 expression was reduced (Figure 5).<br />
Thus, a three day growth culture was harvested and<br />
purified to yield the maximum concentration. The yield of<br />
the purified fusion protein was approximately 258 μg/ml<br />
of original culture. The purified fusion protein was used to<br />
test activity against P. parasitica. Compared to the<br />
controls, the expressed ZmDEF1 showed an activity<br />
against spores germination and hyphal growth of the<br />
fungal pathogen, P. parasitica (Figure 6).<br />
Ectopic expression of ZmDEF1 in tobacco confers<br />
resistance to P. parasitica<br />
Transgenic tobacco plants were generated via<br />
Agrobacterium-mediated transformation, <strong>using</strong> the neomycin<br />
phosphotransferase II gene (NPTII) as a selectable<br />
marker. Transgenic tobacco lines were randomly selected<br />
and screened by PCR, <strong>using</strong> primers specific to ZmDEF1<br />
gene. The ZmDEF1 transcript in seedlings of transgenic<br />
plants was detected by RNA gel blot. The results show<br />
that exogenous ZmDEF1 gene was expressed in all<br />
examined transgenic plants, and was particularly highly<br />
expressed in two lines, oxZmDEF1-1 and oxZmDEF1-8<br />
(Figure 7), while phenotypic abnormalities were not<br />
observed in any transgenic lines as compared to wild-<br />
Figure 6. Antifungal activity of ZmDEF1 on P. parasitica. The<br />
spores of P. parasitica were incubated on PDA plates with a crude<br />
extract of the fusion ZmDEF1 protein for 3 days. PBS was utilized<br />
as a negative control. Bar =1 cm.<br />
Wang et al. 16133<br />
type.<br />
We also examined the effects of the overexpression of<br />
ZmDEF1 on resistance of the transgenic plants to the<br />
fungal pathogen, P. parasitica var. nicotianae. Disease<br />
resistance was evaluated on the T1 transgenic lines<br />
oxZmDEF1-1 and oxZmDEF1-8, as well as the control<br />
line, which transformed with an empty vector. Disease<br />
symptoms appeared on detached leaves of the control<br />
plants in the form of lesions 5 to 6 days after inoculation,<br />
and consequently lead to the appearance of yellowish<br />
necrotic lesions 10 days after inoculation. On the<br />
contrary, symptoms were not detected on leaves of<br />
transgenic lines (Figure 8). Subsequently, a whole plant<br />
assay was carried out. The disease symptoms started to<br />
appear on the control plants at 6 days after infection, but<br />
no symptoms were observed on the transgenic plants. By<br />
8 days after infection, the control plants had severe<br />
disease symptoms such as leaf wilting and stem rot, and<br />
eventually died within 14 days (Figure 9). However, both<br />
of the transgenic lines remained relatively healthy with<br />
only a slight yellowing of the bottom leaves that had<br />
contact with the infecting fungus. We also observed a<br />
difference in the severity of tissue damage between<br />
control and ZmDEF1 transgenic plants. The longitudinal<br />
section of stem showed that all the tissues of control<br />
plants, including epidermis, cortex and pith, were black<br />
and rotten, while the corresponding part of transgenic<br />
plants remained green (Figure 9I and J).
16134 Afr. J. Biotechnol.<br />
Figure 7. Northern blot analysis of ZmDEF1 in leaves of transgenic tobacco. Total RNA was hybridized with a radioactively<br />
labeled ZmDEF1 probe. 1, 8, 9, 12: transgenic tobacco lines oxZmDEF1-1, oxZmDEF1-8, oxZmDEF1-9 and oxZmDEF1-12.<br />
EV, regenerated plants transformed with plasmid pBI121. WT, wild type.<br />
Figure 8. Fungal resistance test of detached leaves of transgenic tobacco expressing ZmDEF1. The results were photographed<br />
ten days after inoculation with Phytophthora palmivora. EV, the T1 plants transformed with plasmid pBI121.<br />
DISCUSSION<br />
Plants have developed various defense mechanisms<br />
against pathogen attack. Defensins are one class of<br />
antimicrobial proteins that fight off the foreign pathogens<br />
(García-Olmedo et al., 1998). All plant defensins descryibed<br />
to date have a signal peptide marking the protein for<br />
extracellular secretion (Thomma et al., 2002). In the<br />
present study, we cloned a cDNA encoding a novel plant<br />
defensin ZmDEF1, <strong>from</strong> Z. mays germinated seeds. The<br />
predicted protein would have a 31 amino acid signal<br />
peptide (Figure 1). The mature peptide of ZmDEF1<br />
contains all the conserved residues reported for plant<br />
defensins (Lay and Anderson, 2005). Therefore, ZmDEF1<br />
is likely a novel member of defensins family.<br />
The majority of plants defensin genes are expressed in<br />
the seeds of various monocot and dicot species<br />
(Bohlmann, 1994; Broekaert et al., 1997). They have<br />
been shown to be present as part of normal development<br />
or maturation, perhaps as a static defense against<br />
pathogens (Thomma et al., 2002). Balandin et al. (2005)<br />
found that the transcripts of ZmESR-6 were restricted to<br />
the embryo surrounding region (ESR) of the kernel, but<br />
the protein accumulated in the placentochalaza-cells at<br />
the grain filling phase. The function of ZmESR-6 was<br />
thought to protect the germinating kernel <strong>from</strong> pathogens.<br />
Similar to ZmESR-6, the ZmDEF1 mRNA preferentially<br />
accumulates in immature and mature seeds (Figure 3),<br />
suggesting a defensive role in protecting kernels during<br />
seed development. Jasmonate has been shown to be an<br />
effective inducer of other defensins (Epple et al., 1997;<br />
Thomma et al., 1998). However, the expression of<br />
ZmDEF1 could not be induced in seedlings after treatment<br />
with ABA or MeJa (data not shown). This result is<br />
consistent with a specialized role of ZmDEF1.<br />
More also, we chose the methylotrophic yeast P.<br />
pastoris expression system to study the antifungal activity<br />
of ZmDEF1 in vitro. A major advantage of P. pastoris,
Wang et al. 16135<br />
Figure 9. Tobacco plants challenged with Black Shank P. parasitica. Pictures were taken eight days after P. palmivora<br />
inoculation. a, c, e, g and i show transgenic plants, while b, d, f, h and j, show controls, the T1 plants transformed with<br />
plasmid pBI121. Compared with control, the transgenic tobacco plants were still green after pathogen infection.<br />
over bacterial expression systems, is that the yeast has<br />
the potential to perform many of the post-translational<br />
modifications typically associated with higher eukaryotes,<br />
such as the processing of signal sequences, folding,<br />
disulfide bridge formation, certain types of lipid addition<br />
and glycosylation (Cereghino and Cregg, 2000). Eight<br />
cysteine residues present in ZmDEF1 mature protein play<br />
an important role in protein stabilization by formation<br />
multiple disulfide bridges. P. pastoris is believed to be<br />
more effective in promoting disulfide bonding than the
16136 Afr. J. Biotechnol.<br />
Escherichia coli (Cregg et al., 1993). In our previous<br />
work, we found that the fusion ZmDEF1 expressed <strong>using</strong><br />
a prokaryotic system showed no antifungal activity (data<br />
not shown) possibility due to improper folding of the<br />
recombinant protein. However, the recombinant ZmDEF1<br />
peptide created <strong>using</strong> the P. pastoris expression system<br />
exhibits an inhibitory activity on P. parasitica growth<br />
(Figure 6).<br />
Due to an alarming increase of resistance of<br />
microorganisms to classical antibiotics, the introduction<br />
and expression of antimicrobial peptides like plant<br />
defensins in crops is emerging as an intriguing<br />
biotechnological application for enhancing disease<br />
resistance (Punja, 2001; Osusky et al., 2000; Jha and<br />
Chattoo, 2010). In this work, a new plant defensin gene,<br />
ZmDEF1, was introduced into tobacco by Agrobacteriummediated<br />
transformation. Results indicate that<br />
constitutive expression of the ZmDEF1 gene under the<br />
control of the CaMV 35S promoter in tobacco results in<br />
enhanced resistance against P. parasitica (Figures 8 and<br />
9). Thus, the antifungal activity of the defensin ZmDEF1<br />
and its availability for genetic engineering should make it<br />
useful as gene source for engineering transgenic plants<br />
resistant against phytopathogenic fungi.<br />
ACKNOWLEDEGMENTS<br />
This work was supported by National Natural Science<br />
Foundation (Grant No. 31171258) and the projects (No.<br />
2008ZX08009-003 and 2008ZX08003-002) <strong>from</strong> the<br />
Ministry of Agriculture of China for Transgenic Research.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16138-16144, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1994<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Karyotype studies on Tagetes erecta L. and Tagetes<br />
patula L.<br />
Pin Zhang, Li Zeng*, Yan-Xue Su, Xiao-Wen Gong and Xiao-Sha Wang<br />
School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 200240, China.<br />
Accepted 30 September, 2011<br />
Karyotypes of nine Tagetes erecta L. accessions and three Tagetes patula L. accessions were studied.<br />
The chromosome numbers of T. erecta and T. patula were 2n=2x=24 and 2n=4x=48, respectively. The<br />
karyotype formulae of T. erecta L. ‘Scarletade’ and ‘Perfection Yellow’ are 2n=2x=24=4sm+20m; ‘9901AB’<br />
and ‘Harvest’, 2n=2x=24=2sm+22m; ‘Taishan’, 2n=2x=24=14sm+10m; ‘Marvel’ and ‘Perfection Orange’,<br />
2n=2x=24=24m. The karyotype formulae of T. patula L.: ‘GoldenGate’ and ‘Janie’ are<br />
2n=4x=48=4sm+44m; ‘Little Hero’, 2n=4x=48=48m.<br />
Key words: Tagetes erecta L., Tagetes patula L., chromosome, karyotype.<br />
INTRODUCTION<br />
Tagetes erecta L. and Tagetes patula L. belonged to<br />
composites family. They originated <strong>from</strong> Central America,<br />
mainly distributed in western Mexico and southeastern<br />
Arizona (Robert, 1962). The genus Tagetes (Asteraceae)<br />
contains 56 species, of which only few species were<br />
currently cultivated as horticultural crops. Some<br />
companies, such as, Thompson and Morgan, Pan-<br />
American Seed and SluisGroot etc. cultivate new<br />
cultivars every year. Examples are, ‘Marvel’ line, ‘Taishan’<br />
line of T. erecta L. and ‘Bonanza’ line, ‘Boy’ line of T.<br />
patula L. which have been widely used in the world. Most<br />
of the cultivars were produced in the traditional<br />
hybridization breeding way (Wang, 2003, 2009; Tian et<br />
al., 2007). Besides, some works also have been done on<br />
the breeding of transgenic marigold (Gregorio et al.,<br />
1992; Charles et al., 2001). Nowadays, the species<br />
widely used throughout the world were T. erecta L., T.<br />
patula L. and T. tenuifolia (Soule, 1996). In China, T.<br />
erecta L. and T. patula L. were introduced and widely<br />
cultivated as important garden plants. In addition, the<br />
inflorescence of pigment T. erecta L. flowers were also<br />
ideal materials for extracting lutein. Therefore, it was very<br />
important to study Tagetes plant with their great<br />
economic value.<br />
The plant taxonomy was mainly based upon morpholo-<br />
*Corresponding author. E-mail: zljs@sjtu.edu.cn. Tel: 021-<br />
34206932. Fax: +86 34206943.<br />
gical, cytological, and molecular biological analysis, etc.<br />
As an important means of cytological analysis,<br />
chromosome karyotype analysis has been widely used in<br />
biological genetic variation, systematic evolution or<br />
relationship identification (Zheng et al., 2005; He et al.,<br />
2005; He and Zhang, 2009). Up till now, there have been<br />
massive reports about chromosome karyotype analysis in<br />
Asteraceae plants (Kong, 2000; Yang, 2001; Xie and<br />
Zheng, 2003; Chen, 2008; Zhang et al., 2009). For<br />
instance, Li et al. (2007) studied the karyotype of fourteen<br />
cultivars of cut chrysanthemum, and Zhang et al., (2009)<br />
conducted a cytological study on the genus Syncalathium<br />
(Asteraceae-Lactuceae). But the karyotypes of Tagetes<br />
plants were rarely studied. In our paper, we widely<br />
collected Tagetes species and cultivar materials which<br />
were popular in China for a systematic study on their<br />
chromosome numbers and karyotypes, while related<br />
researches have not been reported. The objective of this<br />
study was to provide cytological information for<br />
systematic classification, breeding and germplasm<br />
resources study.<br />
MATERIALS AND METHODS<br />
This research studied on twelve accessions of genus Tagetes which<br />
were popular in the domestic market, including seven ornamental T.<br />
erecta cultivars, two pigment T. erecta cultivars (T. erecta L.<br />
‘Scarletade’ and ‘9901AB’), three T. patula cultivars (Table1).<br />
All karyotype observations were made <strong>from</strong> root tips. Seeds were<br />
germinated on wet filter paper in Petri dishes at 25°C. Fresh root
Table 1. The source of materials investigated.<br />
Cultivars Source<br />
T. erecta L. ‘Scarletade’ Inner Mongolia Bureau of Parks<br />
T. erecta L.‘9901AB’ Inner Mongolia Bureau of Parks<br />
T. erecta L. ‘Harvest’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Taishan’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Marval’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Perfection Yellow’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Perfection ‘Orange’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Inca Orange’ Beijing Institute of Landscape and Garden<br />
T. erecta L. ‘Inca Yellow’ Beijing Institute of Landscape and Garden<br />
T. patula L. ‘GoldenGate’ Beijing Institute of Landscape and Garden<br />
T. patula L. ‘Little Hero’ Beijing Institute of Landscape and Garden<br />
T .patula L. ‘Janie’ Beijing Institute of Landscape and Garden<br />
Table 2. Parameters of chromosomes of T.erecta and T.patula.<br />
Zhang et al. 16139<br />
Cultivar Karyotype formula A.A.R Lt/St Type Length type As.K(%)<br />
T. erecta L.‘Scarletade’ 2n=2x=4sm+20m 1.5 2.36 1B 2n=4L+8M2+6M1+6S 60.39<br />
T .erecta L.‘9901AB’ 2n=2x=2sm+22m 1.51 2.2 1B 2n=4L+8M2+8M1+4S 60.38<br />
T. erecta L. ‘Harvest’ 2n=2x=6sm+18m 1.66 2.34 1B 2n=4L+6M2+10M1+4S 62.7<br />
T. erecta L.‘Taishan’ 2n=2x=14sm+10m 1.74 2.5 2B 2n=6L+4M2+10M1+4S 64.02<br />
T. erecta L. ‘Marval’ 2n=2x=24m 1.48 2.37 1B 2n=4L+8M2+8M1+4S 59.92<br />
T. patula L. ‘GoldenGate’ 2n=4x=4sm+44m 1.56 2.62 1B 2n=12L+8M2+16M1+12S 61.34<br />
T .patula L.‘Little Hero’ 2n=4x=4sm+44m 1.45 2.8 1B 2n=12L+8M2+16M1+12S 59.67<br />
T. erecta L. ‘Inca Orange’ 2n=2x=2sm+22m 1.32 2.50 1B 2n=4L+8M2+8M1+4S 57.15<br />
T .erecta L. ‘Inca Yellow’ 2n=2x=24m 1.30 2.84 1B 2n=4L+4M2+12M1+2S 56.95<br />
T. patula L. ‘Janie’ 2n=4x=48m 1.46 2.64 1B 2n=12L+12M2+12M1+12S 59.7<br />
T. erecta L. ‘Perfection ‘Yellow’ 2n=2x=4sm+20m 1.31 3.35 1B 2n=6L+6M2+6M1+6S 56.85<br />
T .erecta L. ‘Perfection ‘Orange’ 2n=2x=24m 1.17 2.43 1B 2n=6L+8M2+6M1+4S 54.06<br />
A.A.R= Average arm ratio; Lt= Longest arm; St-Shortest arm; As.k(%)= Index of the karyotypic asymmetry.<br />
tips were cut approximately 1 cm long before pretreated in 0.002<br />
mol/L 8-hydroxyquinoline solution for 4 h; then, fixed with Carnoy I<br />
(glacial acetic acid : 70% ethanol = 1:3) for 20 h. After hydrolysis in<br />
1 mol/L HCl at 60°C for 8 -10 min, the root tips were rinsed in<br />
distilled water twice for approximately 20 min. Prior to observation,<br />
stained with phenol fuchsin solution for 30 min, and squashed for<br />
chromosome observation. Observations were made of somatic<br />
mitotic metaphase. At least thirty cells of each cultivar have been<br />
observed to ensure their chromosome number. Five cells’s<br />
chromosome parameters of each cultivar were surveyed and<br />
calculated according to Li et al. (1985); karyotype asymmetry (KA)<br />
was classified according to Arano (1963) and karyotype<br />
classification was according to Stebbins (1971).<br />
RESULTS<br />
Chromosome number of 2n=2x=24 was found among the<br />
T. erecta L. cultivars; T. patula L. cultivars have a<br />
chromosome number of 2n=4x=48. Satellite has not been<br />
found in the tested plants. Their detailed parameters and<br />
karyotype formulae are listed in Table 2. The<br />
chromosomes, karyograms and idiograms are shown in<br />
Figures 1, 2 and 3, respectively. Brief descriptions of the<br />
cytological features of each cultivar were as follows:<br />
T. erecta L. ‘Scarletade’<br />
The karyotype formula of T. erecta L. ‘Scarletade’ was<br />
2n=2x=4sm+20m. The ratio of the longest to the shortest<br />
chromosome was 2.36, the KA was of type 1B, average<br />
arm ratio was 1.5 and the length type was<br />
2n=4L+8M2+6M1+6S.<br />
T. erecta L. ‘9901AB’<br />
The karyotype formula of the T. erecta L. ‘9901AB’ was<br />
2n=2x=2sm+22m. The ratio of the longest to the shortest<br />
chromosome was 2.2, the length type was<br />
2n=4L+8M2+8M1+4S, average arm ratio was 1.51 and<br />
the KA was of type 1B.
16140 Afr. J. Biotechnol.<br />
Figure 1. Chromosomes of Tagetes erecta L. and Tagetes patula<br />
L. 1-5, 9-12. Chromosomes of T. erecta L. 1. ‘Scarletade’. 2.<br />
‘9901AB’. 3. ‘Harvest’. 4. ‘Taishan’. 5. ‘Marvel’. 9. ‘Perfection<br />
‘Yellow’. 10. ‘Perfection Orange’. 11. ‘Inca Orange’. 12. ‘Inca<br />
Yellow’. 6-8. Chromosomes of T.patula L. 6. ‘GoldenGate’. 7.<br />
‘Janie’. 8. ‘Little Hero’.<br />
T. erecta L. ‘Harvest’<br />
The karyotype formula of T. erecta L. ‘Harvest’ was<br />
2n=2x=6sm+18m. The ratio of the longest to the shortest<br />
chromosome was 2.34, the length type was<br />
2n=4L+6M2+10M1+4S, average arm ratio was 1.66 and<br />
the KA was of type 1B.<br />
T. erecta L. ‘Taishan’<br />
The karyotype formula of T. erecta L. ‘Taishan’ was<br />
2n=2x=14sm+10m; the ratio of the longest to the shortest<br />
chromosome was 2.5, the KA was of type 2B, average<br />
arm ratio was 1.74 and length type<br />
was2n=6L+4M2+10M1+4S.<br />
T. erecta L. ‘Marval’<br />
The karyotype formula of T. erecta L. ‘Marval’ was<br />
Figure 1. Contd.<br />
2n=2x=24m. The ratio of the longest to the shortest<br />
chromosome was 2.37, the KA was of type 1B, average<br />
arm ratio was 1.48 and length type was<br />
2n=4L+8M2+8M1+4S.<br />
T. patula L. ‘GoldenGate’<br />
The karyotype formula of T. patula L. ‘GoldenGate’ was<br />
2n=4x=4sm+44m. The ratio of the longest to the shortest<br />
chromosome was 2.62, 2n=12L+8M2+16M1+12S,<br />
average arm ratio was 1.56 and the KA was of type 1B.<br />
T. patula L. ‘Little Hero’<br />
The karyotype formula of T. patula L. ‘Little Hero’ was<br />
2n=4x=4sm+44m. The ratio of the longest to the shortest<br />
chromosome was 2.8, length type was<br />
2n=12L+8M2+16M1+12S, average arm ratio was 1.45<br />
and the KA was of type 1B.
T. patula L. ‘Janie’<br />
Figure 2. Karyograms of Tagetes erecta L. and Tagetes patula L. 1-5, 9-12.<br />
Karyograms of T.erecta L. 1. ‘Scarletade’. 2. ‘9901AB’. 3. ‘Harvest’. 4. ‘Taishan’. 5.<br />
‘Marvel’. 9. ‘Perfection ‘Yellow’. 10. ‘Perfection Orange’. 11. ‘Inca Orange’. 12. ‘Inca<br />
Yellow’. 6-8. Karyograms of T.patula L. 6. ‘GoldenGate’. 7. ‘Janie’. 8. ‘Little Hero’.<br />
The karyotype formula of T. patula L. ‘Janie’ was<br />
Zhang et al. 16141<br />
2n=4x=48m. The ratio of the longest to the shortest<br />
chromosome was 2.64, length type was<br />
2n=12L+12M2+12M1+12S, average arm ratio was 1.46
16142 Afr. J. Biotechnol.<br />
Figure 3. Idiograms of Tagetes erecta L. and Tagetes patula L. 1-5, 9-12. Idiograms of T.erecta L. 1.<br />
‘Scarletade’. 2. ‘9901AB’. 3. ‘Harvest’. 4. ‘Taishan’. 5. ‘Marvel’. 9. ‘Perfection ‘Yellow’. 10. ‘Perfection<br />
Orange’. 11. ‘Inca Orange’. 12. ‘Inca Yellow’. 6-8. Idiograms of T.patula L. 6. ‘GoldenGate’. 7. ‘Janie’. 8.<br />
‘Little Hero’.
and the KA was of type 1B.<br />
T. erecta L. ‘Perfection Yellow’<br />
The karyotype formula of T. erecta L. ‘Perfection ‘Yellow’<br />
’was 2n=2x=4sm+20m. The ratio of the longest to the<br />
shortest chromosome was 3.35, length type was<br />
2n=6L+6M2+6M1+6S, average arm ratio was 1.31 and<br />
the KA was of type 1B.<br />
T. erecta L. ‘Perfection Orange’<br />
The karyotype formula of T. erecta L. ‘Perfection ‘Orange’<br />
’ was 2n=2x=24m. The ratio of the longest to the shortest<br />
chromosome was 2.43, length type was<br />
2n=6L+8M2+6M1+4S, average arm ratio was 1.17 and<br />
the KA was of type 1B.<br />
T. erecta L. ‘Inca Orange’<br />
The karyotype formula of T. erecta L. ‘Inca Orange’ was<br />
2n=2x=2sm+22m. The ratio of the longest to the shortest<br />
chromosome was 2.50, length type was<br />
2n=4L+8M2+8M1+4S, average arm ratio was 1.32 and<br />
the KA was of type 1B.<br />
T. erecta L. ‘Inca Yellow’<br />
The karyotype formula of T. erecta L. ‘Inca Yellow’ was<br />
2n=2x=24m. The ratio of the longest to the shortest<br />
chromosome was 2.84, length type was<br />
2n=4L+4M2+12M1+2S, average arm ratio was 1.30 and<br />
the KA was of type 1B.<br />
DISCUSSION<br />
The main carrier of genetic substances was chromosome.<br />
The size, number and even morphology characters<br />
of chromosome were relatively stable in plants,<br />
alternation of generations are not easily affected by<br />
environmental conditions. Therefore, the karyotype and<br />
chromosome number could provide cytological<br />
information for the plant classification, phylogeny and<br />
relationship identification.<br />
Our results indicate that no satellite existed in the<br />
tested Tagetes plants, all with submetacente (sm) or<br />
metacenters (m). In the last several years, some efforts<br />
have been offered to karyotype analysis on a few Tagetes<br />
plants. Li et al. (2005) studied on the chromosome<br />
number of T. erecta ‘ACHY021’ ‘PBLY026’ and T. patula<br />
‘PBHO029’, the result was consistent with ours. Qi et al.<br />
(2008) only studied on karyotype type of T. erecta L.<br />
Zhang et al. 16143<br />
‘Little Hero’; their result 2B was different <strong>from</strong> ours 1B.<br />
Wang and Li (1987) have studied the chromosome<br />
number and karyotype formula about ten composites. In<br />
their paper, the karyotype formula of genus Tagetes was<br />
2n=24=6sm+16st(2SAT)+2t, which was different <strong>from</strong><br />
ours. However, compared to theses reports, our research<br />
was more systematic. From a lot of work for a long time,<br />
we can ensure that T. erecta L. and T. patula L. had the<br />
same basic chromosome number twelve, and the<br />
chromosome numbers were different, T. erecta L. was<br />
diploid 2n=2x=24, T. patula L. was tetraploid 2n=4x=48.<br />
The difference between our result and others probably<br />
came <strong>from</strong> the experimental error, while the true causes<br />
still needed more researches to illustrate.<br />
Karyotype differences of nine T. erecta L.cultivars and<br />
three T. patula L. cultivars were mainly displayed in such<br />
aspects as average arm ratio, karyotype formula and<br />
index of the karyotypic asymmetry etc. For the T. erecta L<br />
cuiltivars, As.K% ranged <strong>from</strong> 54.06% to 64.02%,<br />
average arm ratio was <strong>from</strong> 1.17 to 1.74 and their primary<br />
karyotype types were 1B except for ‘Taishan’ was 2B.<br />
Metacentric chromosomes existed in the every tested<br />
cultivar, while submetacentric chromosomes did not.<br />
Among 12 pairs of chromosomes in ‘Taishan’, 7 pairs<br />
were submetacenter (sm). But, no pairs of submetacenter<br />
chromosomes was found in both T. erecta L ‘Marvel ‘and<br />
T. erecta L ‘Inca’. Likewise, within the T. patula L.<br />
cultivars, As.K% ranged <strong>from</strong> 59.67 to 61.34%, average<br />
arm ratio was <strong>from</strong> 1.45 to 1.56, with all karyotype types<br />
belong to 1B. Chromosome constitution was same as T.<br />
erecta L. and no submetacenter existed in ‘Jenie’. In<br />
recent years, the karyotypes studies have been not only<br />
on different species but also on different cultivars (Gao<br />
and Zhuang, 2009; Zhan et al., 2009, 2010; Wang et al.,<br />
2010). In these reports, the karyotype differences between<br />
cultivars were also included. This difference maybe<br />
as a result <strong>from</strong> during long-term breeding process, the<br />
chromosomal hybridization occurred between different<br />
populations or individuals with different karyotypes.<br />
According to Levitzky, (1931) and Stebbins (1971), the<br />
basic trend of karyotype evolution was <strong>from</strong> symmetrical<br />
to asymmetrical for the angiosperm. Meanwhile,<br />
according to Arano (1963), when the As.k% was less than<br />
60%, karyotype symmetries were high. It could be<br />
deduced that genus Tagetes asymmetries were relatively<br />
low. Some cultivars have the same karyotype formula, so<br />
they may have a near genetic relationship. This result will<br />
provide basic cytological information for the breeding<br />
work on marigold. But the correct genetic relationship<br />
between these cultivars also needs to be researched<br />
combined with some other methods. Previous studies by<br />
Wang and Li (1987), Li et al. (2005) and Qi et al. (2008)<br />
got the same results in basic chromosome number of<br />
genus Tagetes plants steadily as twelve. The basic<br />
chromosome number was single and maybe support that<br />
the evolutionary process was relatively simple than those<br />
whose basic chromosome number were not single (He
16144 Afr. J. Biotechnol.<br />
and Zhang, 2009). However, more related molecular<br />
biotechnology researches such as gene sequencing and<br />
molecular markers were need to be carried out on more<br />
Tagetes plants.<br />
ACKNOWLEDGEMENTS<br />
This study was supported by Mr. Man-Zhu BAO of<br />
Huazhong Agricultural University for providing materials<br />
and information. This study was supported by Shanghai<br />
natural foundation: Enhancing Lutein Content of Tagetes<br />
erecta L. via over-expressing of psy<br />
Genes(11ZR1418600).<br />
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(Compositae) of Japan, IX. Botanical Magazine (Tokyo). 76: 32-39.<br />
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Tian HY, Wang P, Shen XQ (2007). Genetic Analysis and Botanical<br />
Character in Male Sterile W205AB Line of Marigold. Northern<br />
Horticulture, 2: 105-107.<br />
Wang AX, Feng DQ, Xing SY (2010). Analysis of Karyptype and<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16145-16151, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB10.2002<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Genetic diversity assessment of Diplocyclos palmatus<br />
(L.) C. <strong>Jeffrey</strong> <strong>from</strong> <strong>India</strong> <strong>using</strong> <strong>internal</strong> <strong>transcribed</strong><br />
spacer (ITS) sequences of nuclear ribosomal DNA<br />
M. Ajmal Ali 1 *, Fahad M. A. Al-Hemaid 1 , Joongku Lee 2 , R. K. Choudhary 2 , Naif A. Al-Harbi 1,3<br />
and Soo-Yong Kim 2<br />
1 Department of Botany and Microbiology, College of Science, King Saud University,<br />
Riyadh- 11451, Saudi Arabia.<br />
2 International Biological Material Research Centre, Korea Research Institute of Bioscience<br />
and Biotechnology, Daejeon- 305-806, South Korea.<br />
3 Addiriyah Chair for Environmental Studies, College of Science, King Saud University,<br />
Riyadh 11451, Saudi Arabia<br />
Accepted 24 October, 2011<br />
Internal <strong>transcribed</strong> spacer (ITS) region of nuclear ribosomal DNA <strong>from</strong> 20 populations of Diplocyclos<br />
palmatus (L.) C. <strong>Jeffrey</strong> belonging to five different geographical locations (Bihar, Jharkhand,<br />
Maharashtra, Madhya Pradesh, and Tamil Nadu) of <strong>India</strong> were sequenced. Analysis of nucleotide<br />
sequences reveals polymorphism among the populations [π = 0.01482, θw = 0.01180 (0.00236) and total<br />
variance 3.260]. AMOVA was used to partition the genetic diversity and tested whether there is any<br />
hierarchy of ITS sequence variation among individuals. The genetic differentiation between the<br />
populations is high (ΦST = 0.591). The maximum likelihood tree reveals the evolution of D. palmatus<br />
under reproductive isolation and under different environmental conditions which may be most probably<br />
due to long distance distribution, and possibility of genetic exchange among the populations of D.<br />
palmatus distributed in Bihar and Jharkhnad.<br />
Key words: Diplocyclos palmatus (L.) C. <strong>Jeffrey</strong>, genetic diversity, <strong>internal</strong> <strong>transcribed</strong> spacer (ITS), nrDNA.<br />
INTRODUCTION<br />
Diplocyclos (Endl.) Post and Kuntze [Family<br />
Cucurbitaceae, Tribe Benincaseae (Schaefer and<br />
Renner, 2011)] is a small genus of four species; three<br />
[Diplocyclos leiocarpus (Hook. f.) C. <strong>Jeffrey</strong>, Diplocyclos<br />
schliebenii (Harms) C. <strong>Jeffrey</strong>, Diplocyclos tenuis C.<br />
<strong>Jeffrey</strong>] confined to tropical Africa and one [Diplocyclos<br />
palmatus (L.) C. <strong>Jeffrey</strong>] extends <strong>from</strong> tropical Africa to<br />
*Corresponding author. E-mail: majmalali@rediffmail.com. Tel:<br />
966-75834. Fax: 966-75833.<br />
Abbreviation: ITS, Internal <strong>transcribed</strong> spacer.<br />
Malaysia (www.tropicos.org). In <strong>India</strong> the genus<br />
Diplocyclos is only represented by D. palmatus (commonly<br />
known as Sivalingi or Pachguria) which is growing<br />
wild on bushes, trees and hedges. The plant is a weak<br />
stemmed, branched tendril climber; leaves simple,<br />
alternate, 5-lobed, hairy above, pale and smooth<br />
beneath; flowers yellow, small, unisexual, male in small<br />
fascicles and females solitary; fruits quite conspicuous in<br />
the field due to bunches of globose green with white<br />
striped (or become bright red with white striped when<br />
ripe), smooth with 1 to 2 small seeds. Medicinally it is<br />
useful for skin diseases, inflammations and general<br />
debility (Chakravarty, 1982; Kirtikar and Basu, 1975; Ali<br />
and Pandey, 2007).
16146 Afr. J. Biotechnol.<br />
The nuclear ribosomal transcription unit (NRTU) is<br />
comprised of 18S, 5.8S and 28S genes, two <strong>internal</strong><br />
<strong>transcribed</strong> spacers (ITS-1 and ITS-2), and an intergenic<br />
spacer (IGS). After transcription, the NRTU is processed<br />
to produce mature rRNAs that are key components of<br />
cytoplasmic ribosomes. NRTU are found in hundreds to<br />
thousands of tandem copies and usually several NRTU<br />
clusters are present within plant genomes. The<br />
conserved regions (18S and 28S genes) of NRTU are<br />
used to infer phylogenetic relationships at higher<br />
taxonomy levels, whereas the more rapidly evolving<br />
segments (ITS and IGS) are used for studies at the genic<br />
or population levels (Soltis and Soltis, 1998; Alvarez and<br />
Wendel, 2003). For over a decade, sequences of <strong>internal</strong><br />
<strong>transcribed</strong> spacers (ITS) of NRTUs have been widely<br />
used to infer phylogenetic relationships, genetic diversity<br />
and to unravel evolution in a wide range of complexes in<br />
plants (Alvarez and Wendel, 2003; Baldwin and Markos,<br />
1998; Baldwin et al., 1995; Hershkovitz et al., 1999;<br />
Kelch and Baldwin, 2003; Lee et al., 2002). Although,<br />
NRTUs are found in thousands of copies within a<br />
genome, intra-genomic diversity is generally low (Baldwin<br />
et al., 1995). This homogeneity among NRTUs is attributed<br />
to concerted evolution (Baldwin et al., 1995;<br />
Ainouche and Bayer, 1997), a process that acts through<br />
gene conversion and unequal crossing over. Despite the<br />
fact that homogenization is a norm among NRTUs in a<br />
genome, extensive intra-individual and intra-specific<br />
variation has been observed in various plant species<br />
(Campbell et al., 1997; Hughes et al., 2002). The<br />
accumulating evidence suggests that intra-individual<br />
variation of nuclear ribosomal ITS regions should not be<br />
considered as exceptional (Feliner et al., 2004). Because<br />
of the influence of concerted evolution, the occurrence of<br />
ancestral polymorphisms is not the most likely ultimate<br />
cause for intra-genomic variability in this marker. Instead,<br />
a more frequent origin is the merging of different ITS<br />
copies within the same genome as a consequence of<br />
gene flow. Once the two copies meet, the fate of the<br />
polymorphism depends on genetic, reproductive and<br />
population-level factors: Specifically, the number and<br />
location of ribosomal loci (on the same or different<br />
chromosomes), the occurrence of polyploidy and/or<br />
apomixes (Hershkovitz et al., 1999; Campbell et al.,<br />
1997; Buckler et al., 1997), and the relative abundance of<br />
different ITS copies in the breeding populations (Feliner<br />
et al., 2004).<br />
D. palmatus shows morphological intermediate among<br />
the population. Because of its medicinal properties the<br />
plant is being over explored by the local people <strong>from</strong> the<br />
wild. An important prerequisite for development of an<br />
effective conservation strategy is the proper evaluation of<br />
the distribution and study at the level of genetic variation<br />
(Milligan et al., 1994). A perusal of literature reveals that<br />
phylogeny and classification of the family Cucurbitaceae<br />
have been the focus of several studies (Schaefer and<br />
Renner, 2011; Ali et al., 2009; Kocyan et al., 2007; Zhang<br />
et al., 2006; <strong>Jeffrey</strong>, 2005; Decker-Walters et al., 2004;<br />
Chung et al., 2003; Jobst et al., 1998); however, the<br />
information on population structure and genetic variation<br />
of D. palmatus is lacking. Hence, the main objectives of<br />
the present study were to utilize the nucleotide data of<br />
the ITS region to evaluate the degree of differentiation<br />
among the populations of D. palmatus <strong>from</strong> <strong>India</strong>.<br />
MATERIALS AND METHODS<br />
Plant materials<br />
Leaf samples of D. palmatus were collected <strong>from</strong> different<br />
geographical region of <strong>India</strong>. All the collected voucher specimens<br />
have been deposited in the Tilka Manhji Bhagalpur University<br />
Herbarium (BHAG), Bihar, <strong>India</strong>. For comparison, the sequence of<br />
closely related species Coccinia grandis (L.) Viogt. <strong>from</strong> our earlier<br />
study (Ali et al., 2009) was included in the analysis.<br />
DNA extraction<br />
Leaves were dried in silica gel prior to DNA extraction. Total<br />
genomic DNA was extracted by following the 2X CTAB method<br />
(Doyle and Doyle, 1987) or <strong>using</strong> the DNeasy Plant Mini kit<br />
(QIAGEN Inc., Crawley, West Sussex, UK). Total genomic DNA<br />
was extracted <strong>from</strong> similar amounts of silica dried tissue (~10 to 50<br />
mg dry mass) as well as <strong>from</strong> herbarium specimens following the<br />
cetyltrimethyl ammonium bromide (CTAB) procedure (Doyle and<br />
Doyle, 1987). After precipitation with isopropanol and subsequent<br />
centrifugation, the DNA pellet was washed with 70% ethanol, dried<br />
at 37°C, and resuspended in TRIS-EDTA (TE) buffer.<br />
Amplification of ITS region<br />
ITS sequences of nuclear ribosomal DNA were amplified <strong>using</strong><br />
primers of White et al. (1990) ITS1F (5’-GTCCACTGAACCTT<br />
ATCATTTAG-3’) and ITS4R (5’-TCCTCCGCTTATTGATATGC-3’)<br />
via the polymerase chain reaction (PCR) <strong>using</strong> the AccuPower HF<br />
PCR PreMix (Bioneer, Daejeon, South Korea). One round of<br />
amplification consisting of denaturation at 94°C for 5 min followed<br />
by 40 cycles of denaturation at 94°C for 1 min, annealing at 49°C<br />
for 1 min and extension at 72°C for 1 min, with a final extension<br />
step of 72°C for 5 min. The PCR products were purified <strong>using</strong><br />
SolGent PCR Purification Kit-Ultra (SolGent, Daejeon, South Korea)<br />
prior to sequencing.<br />
DNA Sequencing<br />
The purified fragments were directly sequenced <strong>using</strong> dye<br />
terminator chemistry following the manufacturer’s protocol. The<br />
sequencing reaction was performed in a 10 µl final volume with the<br />
BigDye Terminator cycle sequencing kit (Perkin-Elmer, Applied<br />
Biosystems). Cycle sequencing was conducted <strong>using</strong> same primers<br />
used in amplification and BigDye vers. 3 reagents and an ABI<br />
PRISM 3100 DNA Analyzer (Perkin-Elmer, Applied Biosystems).<br />
Cycling conditions included an initial denaturing set at 94°C for 5<br />
min, followed by 30 cycles of 96°C for 10 s, 50°C for 5 s, and 60°C<br />
for 4 min. Sequenced product was precipitated with 17 µl of
Table 1. Sampling location of Diplocyclos palmatus and GenBank accession number.<br />
Population Population code/ Voucher GenBank accession number<br />
Dp bgp1 GQ183041<br />
Dp bgp2 JN834058<br />
Dp bgp3 JN834059<br />
Bihar<br />
Dp bgp4 JN834060<br />
Dp kis1 JN834061<br />
Dp kis2 JN834062<br />
Dp kis3 JN834063<br />
Jharkhand<br />
Maharashtra<br />
Madhya Pradesh<br />
Tamil Nadu<br />
deionized sterile water, 3 µl of 3 M NaOAc, and 70 µl of 95% EtOH.<br />
Polyacrylamide gel electrophoresis was conducted with Long<br />
Ranger Single packs (FMC BioProducts) and an ABI 3100<br />
automated DNA sequencer (Perkin-Elmer, Applied Biosystems).<br />
Each sample was sequenced in the sense and antisense direction.<br />
The sequences were analyzed with ABI sequence navigator<br />
software (Perkin-Elmer/Applied Biosystems). The sequencing was<br />
done through commercial service of Macrogen Inc. (South Korea).<br />
The sequences were analyzed with ABI Sequence Navigator<br />
software (Perkin-Elmer/Applied Biosystems). Nucleotide sequences<br />
of both DNA strands were obtained and compared the forward and<br />
reverse sequence to ensure accuracy.<br />
Data analysis<br />
Sequence alignment<br />
Sequence alignments were performed <strong>using</strong> ClustalX version 1.81<br />
(Thompson et al., 1997). Sequence alignments were subsequently<br />
adjusted manually <strong>using</strong> BioEdit (Hall, 1999). Insertion-deletions<br />
(Indels) were scored as single characters when we had confidence<br />
in positional homology. The boundaries between the ITS1, 5.8S,<br />
and ITS2 were determined by comparisons with earlier published<br />
sequences (Jobst et al., 1998). Gaps were treated as missing data<br />
in phylogenetic analyses. All sequences generated in the present<br />
study were deposited in GenBank and GenBank accession<br />
numbers are included in Table 1.<br />
Dp pkr1 JN834064<br />
Dp pkr2 JN834065<br />
Dp pkr3 JN834066<br />
Dp klp1 JN834067<br />
Dp klp2 JN834068<br />
Dp klp3 JN834069<br />
Dp bhp1 JN834070<br />
Dp bhp2 JN834071<br />
Dp bhp3 JN834072<br />
Dp tn1 JN834073<br />
Dp tn2 JN834074<br />
Dp tn3 JN834075<br />
Dp tn4 JN834076<br />
Sequence diversity<br />
Ali et al. 16147<br />
Nucleotide polymorphism, as measured by θw (Watterson, 1975)<br />
and diversity, as measured by π (Nei, 1978) were calculated <strong>using</strong><br />
DnaSP v4.5 (Rozas and Rozas, 1999). Analysis of molecular<br />
variance (AMOVA) was performed <strong>using</strong> GenAlEx 6.1 (Peakall and<br />
Smouse, 2006) to assess genotypic variations across all the<br />
populations studied. This analysis, apart <strong>from</strong> partitioning of total<br />
genetic variation into within-group and among-group variation<br />
components, also provided a measure of intergroup genetic<br />
distance as proportion of the total variation residing between<br />
populations. The significance of the analysis was tested <strong>using</strong> 999<br />
random permutations.<br />
Phylogenetic analyses<br />
The phylogenetic analysis of aligned sequences was performed by<br />
maximum likelihood (ML) <strong>using</strong> MEGA5 (Tamura et al., 2007).<br />
Phylogenetic analysis inferred <strong>using</strong> the maximum likelihood<br />
method was based on the Tamura-Nei model (Tamura and Nei,<br />
1993). Initial tree(s) for the heuristic search were obtained<br />
automatically as follows. When the number of common sites was <<br />
100 or less than one fourth of the total number of sites, the<br />
maximum parsimony method was used; otherwise BIONJ method<br />
with MCL distance matrix was used. Substitution pattern and rates<br />
were estimated under the Kimura (1980) 2-parameter model<br />
(Kimura, 1980). For estimating ML values, a user-specified topology<br />
was used. Substitution pattern and rates were estimated under the
16148 Afr. J. Biotechnol.<br />
Table 2. Maximum composite likelihood estimate of the pattern of nucleotide substitution.<br />
Nucleotide A T C G<br />
A - 5.53 10.45 9.77<br />
T 5.42 - 16.04 8.23<br />
C 5.42 8.48 - 8.23<br />
G 6.44 5.53 10.45 -<br />
Each entry shows the probability of substitution <strong>from</strong> one base (row) to another base (column)<br />
(Tamura et al., 2004). Rates of different transitional substitutions are shown in bold and those<br />
of transversional substitutions are shown in italics.<br />
Tamura and Nei, (1993) model (+Gamma) (Tamura and Nei, 1993).<br />
A discrete gamma distribution was used to model evolutionary rate<br />
differences among sites (5 categories, [+G]).<br />
RESULTS AND DISCUSSION<br />
Nucleotide sequences and intraspecific divergence<br />
The amplified region of ITS1-5.8S-ITS2 in D. palmatus<br />
was found 599 base pairs (bp) [ITS1- 216, 5.8S- 164,<br />
ITS2- 219]. Outgroup spacer lengths were 593 bp. Data<br />
matrix has a total number of 606 characters of which<br />
invariable sites were 534 bp, variable sites were 52 (total<br />
number of mutations were 53), singleton variable sites<br />
were 28 and parsimony informative sites were 24.<br />
Insertions and deletions (indels) were necessary to align<br />
the sequences. The substitution probabilities are given in<br />
Table 2. The nucleotide frequencies were 0.183 (A),<br />
0.187 (T/U), 0.353 (C), and 0.278 (G). The transition/<br />
transversion rate ratios were k1 = 1.187 (purines) and k2<br />
= 1.534 (pyrimidines). The overall transition/ transversion<br />
bias (R) was found 0.874.<br />
The absence of other variable regions in the nuclear<br />
DNA of plants that could provide useful markers at both<br />
intra-family (Baldwin and Markos, 1998) and intragenomic<br />
level differentiation (Feliner et al., 2004), makes<br />
ITS ostensibly the best marker for phylogenetic studies.<br />
Polymorphism was observed among the populations [π<br />
Figure 1. Percentage of ITS variance within and among population<br />
of Diplocyclos palmatus<br />
= 0.01482, θw = 0.01180 (0.00236) and total variance<br />
3.260]. Variability within the nuclear ribosomal<br />
transcription unit (NRTU) usually depends upon number<br />
of gene copies, rates of mutation, concerted evolution,<br />
number and chromosomal location of NRTU clusters, and<br />
proportion of sexual and asexual reproduction (Dover et<br />
al., 1993). Polymorphism may arise when concerted<br />
evolution is not fast enough to homogenize repeats in<br />
face of high rates of mutation (Appels and Honeycutt,<br />
1986) or by loss of sexual recombination (Campbell et al.,<br />
1997).<br />
AMOVA was used to partition the genetic diversity of D.<br />
palmatus and tested whether there is any hierarchy of<br />
ITS sequence variation among individuals (Figures 1 and<br />
2 and Table 3). The genetic differentiation between the<br />
populations is high (ΦST = 0.591). {(Nei, 1978) classified<br />
GST > 0.15 as high, ΦST and GST both denote fixation<br />
index and are comparable)}.<br />
Phylogenetic reconstruction<br />
Phylogenetic analysis inferred <strong>using</strong> the maximum<br />
likelihood method based on the Tamura-Nei model<br />
(Tamura and Nei, 1993) resulted into the ML tree with the<br />
highest log likelihood (-1102.8302) is shown in Figure 3.<br />
Substitution pattern and rates estimated under the<br />
Kimura (1980) 2-parameter model (Kimura, 1980) shows<br />
the nucleotide frequencies A = 20.63%, T/U = 16.65%, C
Figure 2. Frequency distribution of random PhiPT vs observed PhiPT among population of Diplocyclos<br />
palmatus<br />
Table 3. Hierarchical analysis of molecular variance (AMOVA) within/among D. palmatus populations.<br />
Ali et al. 16149<br />
Source of variation d.f. SSD Estimated variance Total variance (%) ΦST p-value<br />
Among population 4 4.233 0.233 59<br />
Within population 15 2.417 0.161 41<br />
0.591 0.198<br />
Total 19 6.650 0.394<br />
d.f.: Degrees of freedom; SSD: Sum of squared deviations; ΦST: Fixation index; p-value: The probability of having a more extreme<br />
variance component than the observed.<br />
Figure 3. Evolutionary relationships of Diplocyclos palmatus inferred <strong>using</strong> ML method implemented in MEGA5. The<br />
percentage of trees in which the associated taxa clustered together is shown next to the branches. Numbers on the branches<br />
indicate bootstrap support under 100 bootstrap replicates.<br />
= 35.04%, and G = 27.67%. The maximum Log likelihood<br />
for the computation of estimating ML values was -<br />
336.940. The estimated value of the shape parameter for<br />
the discrete gamma distribution was 200.0. Substitution<br />
pattern and rates estimated under the Tamura and Nei,<br />
(1993) model (+Gamma) (Tamura and Nei, 1993) reveals<br />
mean evolutionary rates 0.90, 0.96, 1.00, 1.04, 1.10<br />
substitutions per site. The nucleotide frequencies was A =<br />
20.63%, T/U = 16.65%, C = 35.04%, and G = 27.67%.<br />
The maximum Log likelihood for this computation was –
16150 Afr. J. Biotechnol.<br />
336.941.<br />
The maximum likelihood tree reveals that all the<br />
sampled population of D. palmatus grouped together in a<br />
single clade (100% bootstrap support). The ML tree<br />
shows that the populations of different geographic<br />
location sampled in the present study grouped according<br />
to their geographic locations. It was interesting to note<br />
that population collected <strong>from</strong> the geographic location of<br />
Jharkhand nested within the clade of Bihar. This indicates<br />
that the possibility of genetic exchange among the<br />
populations distributed in Bihar and Jharkhnad which<br />
might have evolved under reproductive isolation and<br />
under different environmental conditions.<br />
ACKNOWLEDGEMENTS<br />
Post Doctoral Fellowship <strong>from</strong> Korea Research Institute<br />
of Biosciences and Biotechnology (KRIBB), Daejeon,<br />
South Korea to MAA and SYK is thankfully acknowledged.<br />
This work was supported partially by Addiriyah Chair for<br />
Environmental Studies, King Saud University, Saudi<br />
Arabia.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16152-15156, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.553<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Regeneration of plantlets under NaCl stress <strong>from</strong> NaN3<br />
treated sugarcane explants<br />
Ikram-ul-Haq 1 *, Salma Memon 1 , Nazia Parveen Gill 2 and Muhammad Tahir Rajput 3<br />
1 Institute of Biotechnology and Genetic Engineering (IBGE), University of Sindh, 76080, Jamshoro, Pakistan.<br />
2 Department of Statistics, University of Sindh, 76080, Jamshoro, Pakistan.<br />
3 Institute of Plant Sciences, University of Sindh, 76080, Jamshoro, Pakistan.<br />
Accepted 31 October, 2011<br />
In this experiment, mutation induction in explants <strong>using</strong> NaN3 and subsequently, callus growth and<br />
plant regeneration under NaCl stressed conditions was assessed in some sugarcane (Saccharum<br />
officinarum L.) cultivars (Thatta-10, CPF-237 and SPHS-19). Immature bases of leaf tips were cultured<br />
on MS2n (MS salts, 3.0 mg L -1 ; 2,4-D, 0.5% NaN3) for 6 days then sub-cultured on MS2 (MS salts, 3.0 mg L -<br />
1 2,4-D), MS2a (MS2, 25 mol m -3 NaCl), MS2b (MS2, 50 mol m -3 NaCl) and MS2c (MS2, 75 mol m -3 NaCl) media<br />
in dark condition. After 6 weeks, callus growth was observed to be significantly higher (72.34 ± 3.70%)<br />
in CPF-237 in the control (MS2), and lowest (57.66 ± 4.34%) in SPHS-19 in MS2d culture. Somatic embryos<br />
were induced in proliferated calluses on MS3 (MS salts, 0.5 mg L -1 ; BAP, 0.4 mg L -1 ; kin, 0.3 g L -1 ; casein<br />
hydrolysate, 3% sucrose) medium under dark condition for 2 weeks. These calluses were sub-cultured<br />
on MS4 (MS, 0.3 mg L -1 ; BAP, 0.2 mg L -1 ; kin, 3% glucose), MS4a (MS4, 25 mol m -3 NaCl), MS4b (MS4, 50<br />
mol m -3 NaCl) and MS4c (MS4, 75 mol m -3 NaCl) media. Maximum of 8.41 ± 0.36 plantlets callus -1 were<br />
regenerated in MS4 (control) culture of Thatta-10, and 4.94 ± 0.05 plantlets of CPF-237 in 25 mol m -3 NaCl<br />
stressed plant regeneration (MS4a) medium. Plant regeneration on MS4b (2.21 ± 0.17 plantlets callus -1 )<br />
was observed in CPF-237 only. Regenerated plantlets were rooted and considered as salt tolerant in<br />
comparison to its parent cultivars.<br />
Key words: Kinetin, somatic embryos, regenerated plantlets, Saccharum officinarum.<br />
INTRODUCTION<br />
Today, about 65% sugar is contributed by sugarcane<br />
(Saccharum spp.) of the world (Alam et al., 1995). It is a<br />
cash as well as domestic food source. Unfortunately, a<br />
number of disease and abiotic factors such as cold,<br />
drought and salinity have been reducing its vegetative<br />
production significantly. Improvement of this crop against<br />
these stresses has gained great importance. Sugarcane<br />
is heterozygous crop naturally. In vitro selection is<br />
important for superior somaclones. It is a supplementary<br />
tool for the development of stress resistant plants through<br />
*Corresponding author. E-mail: rao.ikram@yahoo.com. Tel:<br />
+92-345-2914291.<br />
Abbreviations: MS, Murashige and Skoog basal salts; NaN3,<br />
sodium azide; 2,4-D, 2,4-dichlorophenoxyaceticacid; kin,<br />
kinetin; BAP, benzyleaminopurine; NaCl, sodium chloride; F<br />
Wt, fresh weight; D Wt, dry weight.<br />
traditional breeding (Dix, 1993; Ashraf, 1994).<br />
Among aseptic plant cultures, plant regeneration<br />
through callus development and somatic embryogenesis<br />
has got initial prime step for manipulation of crops by<br />
<strong>using</strong> modern biotechnological techniques (Saharan et<br />
al., 2004). This technique is also important to exploit the<br />
induced as well as existed somaclonal variations among<br />
the cultured explants or multiplied calluses (Islam et al.,<br />
2011). Aseptic plant cell selection of relative salt tolerant<br />
genotypes or cell lines is possible and it has been<br />
reported in many plant species (Alvarez et al., 2003;<br />
Gandonou et al., 2005; Lutts et al., 1999; Haq et al.,<br />
2011). In vitro plant regeneration has always remained an<br />
excellent tool for diagnosis of correlation for plant<br />
morphogenesis against salt stress.<br />
Sodium azide is an important and most powerful<br />
chemical mutagen for crop plants. It affects plant<br />
physiology significantly and decreases cyanide resistant<br />
plant respiration among the callus cultures (Wen and
Liang, 1995). It is a well known prominent mutagenic in<br />
several plants and animals (Grant and Salamone, 1994).<br />
Sodium azide is functionally mutagenic chemical in<br />
various organisms, but not in Drosophila (Kamra and<br />
Gallopudi, 1979; Arenaz et al., 1989) and Arabidopsis.<br />
Actually, mutagenicity in living systems is mediated<br />
through biosynthesis of organic metabolite of azide compound<br />
(Owais and Kleinhofs, 1988). This metabolite<br />
creates point mutation in DNA when entering into the<br />
nucleus (Gichner and Veleminsky, 1977).<br />
Aseptic plant regeneration has been an incremental<br />
tool for mutation induction, while totipotency of a single<br />
cell is a useful work for the establishment of pure form of<br />
species. It can facilitate the development of several numbers<br />
of its new genotypes (Mandal et al., 2000; Barakat<br />
et al., 2010; Al-Qurainy and Khan, 2010). Similarly,<br />
indirect plant regeneration in sugarcane has been<br />
established for some local sugarcane cultivars by Haq et<br />
al. (2011). This protocol could be utilized successfully for<br />
the improvement of sugarcane through in-vitro<br />
mutagenesis to develop more selected and unique<br />
relevant traits of this crop.<br />
The aim of the present study was to induce mutation in<br />
initial explants of sugarcane (Saccharum officinarum L.)<br />
cultivars, after which they are subjected to callus growth<br />
and then subsequent plant regeneration under different<br />
saline stressed cultures. Cell lines are selected on the<br />
basis of growth behaviors under NaCl stressed conditions.<br />
Regenerated plantlets under NaCl stressed conditions<br />
may be involved in inducing salt tolerance.<br />
Developed plantlets may be resistant sources against<br />
saline stressed culture conditions.<br />
MATERIALS AND METHODS<br />
Explants sterilization and NaN3 treatment<br />
Immature bases of leaf tips (0.8 to 1.2 cm) were excised. These tips<br />
were sterilized by washing with 90% ethanol for 2 min. They were<br />
stirred in 30% commercially available Robin Bleach ® (5.25% v/v<br />
NaOCl) for 30 min. Sterilized explants were treated with 0.5% NaN3<br />
for 6-days that was supplied in call<strong>using</strong> medium (MS2). The pH of<br />
medium was adjusted to 4.6 to 4.7.<br />
Callus induction and its proliferation<br />
After the treatment of NaN3, explants were sub-cultured on NaN3<br />
free medium, MS2 [MS basal salts (Murashige and Skoog, 1962);<br />
vitamins B 5 complex (Gamborg et al., 1968); 2% sucrose and<br />
solidified with 8% agar medium supplemented with 3.0 mg L -1 2,4dichlorophenoxy<br />
acetic acid (MS2).<br />
Somatic embryogenesis and plant regeneration<br />
For somatic embryo induction, well proliferated calluses (>6-weeks<br />
old) on MS2 medium were sub-cultured on MS3 medium<br />
supplemented with kin (0.4 mg L -1 ), BAP (0.5 mg L -1 ) and casein<br />
hydrolysate (0.3 g L -1 )] in dark conditions. After 3-weeks, culture<br />
was sub-cultured on MS4 (0.3 mg L -1 BAP, 0.2 mg L -1 kin, 3%<br />
Ikram-ul-Haq et al. 16153<br />
glucose) medium for plant regeneration under dark conditions.<br />
When plant regeneration started, cultures were shifted to light<br />
conditions for further development.<br />
Application of NaCl treatments<br />
Four levels of salt (NaCl) stress were maintained at call<strong>using</strong> stage<br />
that is MS2 (control), MS2a (MS2, 25 mol m -3 NaCl), MS2b (MS2, 50<br />
mol m -3 NaCl) and MS2c (MS2, 75 mol m -3 NaCl). Cultures were<br />
incubated under dark conditions for 6-weeks. At plant regeneration<br />
stage, calluses <strong>from</strong> MS2, MS2a, MS2b and MS2c were sub-cultured<br />
on MS4, MS4a (MS4, 25 mol m -3 NaCl) and MS4b (MS4, 50 mol m -3<br />
NaCl) and MS4c (MS4, 75 mol m -3 NaCl) media after somatic<br />
embryo induction (MS3) for 6-weeks also.<br />
Determination of morphological attributes<br />
The 6-weeks old calluses multiplied under NaCl stressed conditions<br />
were fragmented into small pieces and weighed at an interval of 6weeks.<br />
Callus proliferation rate was calculated by applying the<br />
formula below:<br />
Callus proliferation (%):<br />
Callus Final Wt − Callus<br />
Callus<br />
Final<br />
Wt<br />
Initial<br />
Wt<br />
x 100<br />
These fragmented calluses were dried after taking F Wt weight at<br />
72°c for three days, and then D Wt was determined by electric<br />
balance. The relative water contents (RWC) were calculated<br />
(Robinson and Neil, 1985; Conroy et al., 1988).<br />
After 12-weeks of plant regeneration culture, the number of<br />
regenerated plantlets callus -1 and their heights was measured.<br />
The pH of plant nutrient medium was adjusted (5.7-5.8) before<br />
sterilization. The cultures for callus growth and somatic embryo<br />
induction were incubated under dark conditions, while plant<br />
regeneration was also done under dark condition for initial 6-weeks;<br />
16<br />
it was transferred to h day and light conditions (light intensity 15<br />
8<br />
µmol m -2 s -1 ) at 25ºC±1.<br />
Data analysis<br />
Cultures for each treatment were maintained and comprised 7<br />
replicates. Data significance of treatment was computed with<br />
COSTAT computer package (CoHort software, Berkeley, USA).<br />
RESULTS AND DISCUSSION<br />
The In-vitro culture based on mutational breeding is an<br />
important conventional method for crop improvement.<br />
This method is based on alterations of nucleotide<br />
sequence of DNA within a gene through exposure of<br />
vegetative or reproductive parts to physical as well as<br />
chemical mutagens. In vitro cultures are controlled<br />
phenomena that allow better treatment of mutagen and<br />
further vitrified tissues become easily permeable to<br />
mutagen (Ziv, 1991). The NaN3 is water soluble that<br />
dissociates into hydrozoic ions. Its ionization capacity is<br />
very high, when dissolved in phosphate buffer at low pH<br />
(3.2), almost 19 times more than at pH 6.0. It penetrates<br />
through cell membrane and interacts with genome to
16154 Afr. J. Biotechnol.<br />
Figure 1. A schematic<br />
representation of aspetic plant<br />
regeneration of sugarcane cultivars<br />
<strong>from</strong> NaN3 treated explants under<br />
different levels of NaCl stresses.<br />
create mutation (Kleinhofs et al., 1974).<br />
In general, normal plant regeneration in sugarcane<br />
through somatic embryogenesis is obtained within 20weeks.<br />
During this study, mutagenic plantlets were<br />
regenerated, when 0.8-1.20 sized meristematic bases of<br />
young leaves were treated with 0.5% NaN3 on callus<br />
induction medium as well as multiplication medium<br />
(MS2n) for 6-days (Figure 1). They were washed with<br />
liquid call<strong>using</strong> medium and again sub-cultured on<br />
mutagen free call<strong>using</strong> medium (MS2). They were also<br />
cultured on NaCl stressed callus growth media such as<br />
MS2a, MSb2 and MS2c. After 6-weeks of culture, calluses<br />
were excised <strong>from</strong> the explants and their F Wt was taken.<br />
These calluses were sub-cultured again on their<br />
respective medium for further multiplication (Figure 2) for<br />
6-weeks under dark conditions. Final F Wt of calluses<br />
<strong>from</strong> each treatment was measured again. Maximum<br />
callus proliferation (72.34±3.70%) rate was observed on<br />
MS2 culture of CPF-237, while lower 7.48±0.85% in<br />
SPHS-19 significantly (Table 1). After final F Wt, calluses<br />
were dried, and then D Wt was taken. Relative water<br />
contents were also observed among the calluses that<br />
were higher in Thatta-10 (75.32 ± 3.37), but lower in NaCl<br />
stressed cultures significantly (Table 1). The continuous<br />
callus cultures on NaCl stressed medium causes<br />
induction of some characteristics such as to stop growth,<br />
abnormality or resistance in callus against salt stresses<br />
(Haq et al., 2011; Htwe et al., 2011).<br />
Apparently, well proliferated calluses in call<strong>using</strong><br />
control (MS2) as well as NaCl stressed cultures were subcultured<br />
on somatic embryogenesis medium (MS3) for<br />
three weeks separately. After somatic embryo induction,<br />
calluses were sub-cultured on plant regeneration medium<br />
(MS4) as well as on NaCl stressed plant regeneration<br />
medium on the basis of their respective already<br />
developed medium (control and salt stressed). Maximum<br />
plant regeneration was observed in control (MS4) plant<br />
regeneration cultures of each cultivar. Plant regeneration<br />
efficiency was decreased with the increase in NaCl<br />
stress. No plant regeneration was observed in MS4c in all<br />
cultivars. Similarly, plant regeneration was not observed<br />
on MS4b cultures of Thatta-10 and SPHS-19, while<br />
2.21±0.17 plantlets callus -1 was regenerated in CPF-237<br />
sugarcane cultivar (Table 1, Figure 3). Plant height of the<br />
regenerated plantlets of CPF-237 was less than other<br />
cultivars on each of control as well as NaCl stressed<br />
cultures.<br />
Meanwhile, NaN3 remained a potential mutagen under<br />
in vitro that induces biochemical mutant regeneration<br />
(Hibberd et al., 1982; Bhagwat and Duncan, 1998).<br />
Although, this mutagen causes gene alterations or<br />
mutations at gene level, it also causes chromosomal<br />
aberration mostly (El-Den, 1993; Del Campo et al., 1999).<br />
Morphologically, immediate effects of NaN3 on cultured<br />
meristematic cells appear to be blocked in callus<br />
induction or its proliferation. This is because of<br />
blackening action of genome separation and its<br />
multiplication at S-phased during cell cycle. Further, it is<br />
reported that some induced mutant biochemical causes<br />
inhibition of respiratory chains as well as electron chain<br />
(Johnsen et al., 2002). Through multidisciplinary actions<br />
of NaN3, it is impossible to detect its action in explants.<br />
In this study, mutagenic plantlets were mostly abnormal,<br />
while abnormal plantlets were removed and normal<br />
plantlets were allowed to grow in NaCl stressed plant<br />
regeneration medium. These regenerated plantlets in<br />
CPF-237 were expected to be salt tolerant in comparison<br />
to plantlets regenerated in control (MS4) medium in open<br />
air soil conditions.<br />
ACKNOWLEDGEMENT<br />
The authors are thankful to the Pakistan Agriculture<br />
Research Council (PARC), Islamabad, Pakistan for<br />
providing funds under ALP research program to carry out<br />
this present research work.
Figure 2. Call<strong>using</strong> in sugarcane (Saccharum officinarum L.) cv.,<br />
CPF-237 after mutagen (NaN3) treatment for 6-days on different<br />
NaCl stresses. a: Call<strong>using</strong> on MS nutrient medium with 0 mM NaCl<br />
(MS2); b: Callus proliferation on MS nutrient medium with 25 mM<br />
NaCl (MS2a); c: Culture on 50mM NaCl (MS2b); d: On 75mM NaCl<br />
culture (MS2c).<br />
Ikram-ul-Haq et al. 16155<br />
Table 1. Some callus growth and plant regeneration related parameters of 6-days NaN3 stressed sugarcane cultivars<br />
cultured on different NaCl stressed nutrient media.<br />
Name of cultivars Medium Thatta-10 CPF-237 SPHS-19<br />
Sub-cultures of NaN3 treated explants on different NaCl stressed cultures<br />
a. Callus proliferation (%) MS2 67.18±3.26 72.34±3.70 57.66±4.34<br />
*** MS2a 49.07±3.93 38.33±3.69 38.57±1.50<br />
MS2b 42.27±2.16 17.03±2.32 20.48±1.09<br />
MS2c 28.61±3.62 34.15±1.08 7.48±0.85<br />
b. Relative water contents (%) MS2 75.32±3.37 74.08±2.33 75.16±3.14<br />
** MS2a 71.44±2.69 63.37±2.69 64.97±3.44<br />
MS2b 58.69±3.06 52.14±2.12 54.60±3.40<br />
MS2c 49.45±4.17 56.93±2.15 48.47±2.04<br />
Number of regenerated plantlets callus -1 on NaCl stressed cultures and their heights<br />
a. No. of plantlets callus -1 MS4 8.41±0.36 6.25±0.13 6.95±0.05<br />
MS4a 1.33±0.24 4.94±0.05 0.92±0.09<br />
MS4b - 2.21±0.17 -<br />
MS4c - - -<br />
b. Plant heights (cm) MS4 4.61±0.03 4.02±0.25 4.05±0.05<br />
MS4a 1.66±0.34 3.25±0.11 2.02±0.03<br />
MS4b - 2.10±0.05 -<br />
MS4c - - -
16156 Afr. J. Biotechnol.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16157-16166, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1559<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Proteomic and transcriptomic analysis reveals<br />
evidence for the basis of salt sensitivity in Thai jasmine<br />
rice (Oryza sativa L. cv. KDML 105)<br />
Wichuda Jankangram 1 , Sompong Thammasirirak 2 , Meriel G. Jones 3 , James Hartwell 3 and<br />
Piyada Theerakulpisut 1 *<br />
1 Genomics and Proteomics Research Group for Improvement of Salt-tolerant Rice, Department of Biology, Faculty of<br />
Science, Khon Kaen University, Khon Kaen 40002, Thailand.<br />
2 Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand.<br />
3 School of Biological Sciences, Biosciences Building, Crown Street,University of Liverpool, Liverpool, UK.<br />
Accepted 26 September, 2011<br />
The fragrant Thai jasmine rice cultivar, Khao Dawk Mali 105 (KDML 105), is an economically important<br />
cultivar with valuable flavour characteristics, however, it is very sensitive to salinity. To investigate<br />
whether genetic characters for salt-tolerance are present, proteomes <strong>from</strong> the leaf lamina of KDML 105<br />
and a contrasting salt tolerant cultivar (Pokkali) were compared under saline conditions. Ten differential<br />
proteins were identified, mainly representing gene products involved in photosynthesis, carbon<br />
assimilation and the oxidative stress response. The mRNA transcripts for these proteins were then<br />
monitored in both cultivars <strong>using</strong> semi-quantitative reverse transcription-polymerase chain reaction<br />
(RT-PCR). For Pokkali, the up-regulation of nine identified salt-induced proteins was related to the<br />
increase in abundance of the respective mRNA transcripts. In contrast, although mRNA transcripts<br />
encoding all ten identified proteins could be detected in KDML 105, only three differential proteins<br />
spots were detected in the proteomic analysis. This indicates that although KDML 105 contains<br />
elevated transcript level of genes needed for salt tolerance, the posttranscriptional mechanisms<br />
controlling protein expression levels were not as efficient as in Pokkali, indicating targets for future<br />
genetic improvement.<br />
Key words: Salt stress, fragrant rice, Oryza sativa L., Khao Dawk Mali 105 (KDML 105), proteomics, semiquantitative<br />
RT-PCR.<br />
INTRODUCTION<br />
Salt-affected soils in arid and semi-arid regions are a<br />
major factor adversely affecting rice growth and<br />
productivity worldwide. This area is likely to increase as a<br />
result of increasing irrigation, land clearance, shortage of<br />
rainfall and rising temperatures due to global warming<br />
(Yeo, 1999). Excess soil solution Na + imposes root<br />
*Corresponding author. E-mail: piythe@kku.ac.th. Tel: 6643<br />
342908 or 089 6231777. Fax: 6643 364169.<br />
osmotic stress, and this in turn limits the root’s ability to<br />
extract water <strong>from</strong> the soil. Several complementary<br />
biochemical and physiological adaptations are generally<br />
necessary to establish salt tolerance. These include salt<br />
exclusion at the root level, compartmentalization of toxic<br />
ions <strong>from</strong> the intracellular to whole-plant levels, responsive<br />
stomata, synthesis of compatible solutes, adjustment<br />
in photosynthetic apparatus, alteration of membrane<br />
integrity and efficient detoxification of reactive oxygen<br />
species (Parida and Das, 2005). Rice plants are relatively<br />
sensitive to soil salinity, but salinity tolerance varies
16158 Afr. J. Biotechnol.<br />
tremendously among varieties providing opportunities to<br />
improve crop salt-stress tolerance through genetic means<br />
(Flowers and Yeo, 1981; Mohammadi-Nejad et al., 2008;<br />
Cha-um et al., 2010). Salt-tolerant rice varieties such as<br />
Pokkali have been found to be superior in agronomic<br />
characters such as yield, survival, plant height, and<br />
physiological traits such as ion exclusion (Heenan et al.,<br />
1988; Noble and Rogers, 1992), anti-oxidative systems<br />
(Vaidyanathan et al., 2003) and membrane stability<br />
(Singh et al., 2007).<br />
Proteomics has been used to identify proteins affected<br />
by salinity in several cultivars of rice. Previously identified<br />
salt stress-responsive proteins include ones involved in<br />
major metabolic processes including photosynthetic<br />
carbon dioxide assimilation and photorespiration, photosynthetic<br />
oxygen evolution and stress-responsive proteins<br />
(Kim et al., 2005; Parker et al., 2006). DNA microarrays<br />
have also been applied to monitor changes in the steadystate<br />
abundance of salt-stress regulated transcripts<br />
(Kawasaki et al., 2001; Rabbani et al., 2003). These<br />
studies have identified large numbers of differentially<br />
expressed genes. A recent comparative transcriptomic<br />
analysis of two contrasting rice cultivars (salt-tolerant<br />
Pokkali and salt-sensitive IR64) found a set of genes<br />
representing the signal, relay and response classes of<br />
salt-regulated genes proposed to confer higher salt<br />
tolerance to Pokkali (Kumari et al., 2009).<br />
Several salt sensitive varieties of rice are economically<br />
important because of its characteristics other than yield.<br />
These include the culinary qualities associated with grain<br />
flavour and texture. Thai jasmine rice (also known as<br />
Thai fragrant or Hom Mali rice) is sold at a premium price<br />
because of its superior cooking and sensory qualities,<br />
including fragrance. Thai national authenticity regulations<br />
confine jasmine rice to two cultivars. One of these is<br />
Khao Dawk Mali 105 (KDML 105) that was introduced in<br />
1958 and continues to be grown extensively despite its<br />
low yields and stress-sensitivity (Fitzgerald et al., 2009).<br />
The highest quality KDML 105 is produced in the<br />
Northeast region of Thailand where high productivity is<br />
obstructed by infertile, saline soil and unstable rainfall<br />
(Yoshihashi et al., 2002). Compared to the coastal, salttolerant<br />
<strong>India</strong>n cultivar Pokkali, KDML 105 seedlings are<br />
sensitive to salt stress as indicated by a greater reduction<br />
in plant dry weight, higher Na + /K + and higher electrolyte<br />
leakage (Theerakulpisut et al., 2005). Improvements to<br />
the growth performance of KDML 105 in saline laboratory<br />
media have been demonstrated after providing the<br />
protective metabolite glycinebetaine (Cha-um et al.,<br />
2006) but this is not practical in the field.<br />
A key challenge is to identify genes that control traits<br />
associated with physiological and agronomical parameters<br />
leading to higher salt tolerance while retaining<br />
grain quality, with the goal to accelerate both conventional<br />
and molecular breeding of cultivars with desirable<br />
culinary qualities that will grow in saline soil. One ques-<br />
tion is whether salt sensitive varieties already contain<br />
some of these genes but do not regulate them appropriately<br />
with respect to salinity. We have identified that<br />
although genes for a series of transcripts and proteins<br />
that increase in Pokkali seedling leaves when grown in<br />
saline conditions are also present in KDML 105, the<br />
levels of most proteins do not increase. This suggests<br />
that in KDML 105, salt sensitivity may lie in signaling and<br />
regulation of the response.<br />
MATERIALS AND METHODS<br />
Plant materials<br />
The rice seeds of cultivars KDML 105 and Pokkali were provided by<br />
Pathumthani Rice Research Institute, Thailand. Seeds were<br />
surface-sterilized by soaking in 1.5% (w/v) calcium hypochlorite for<br />
30 min, thoroughly washed and germinated in distilled water. The<br />
uniformly germinated seeds were transferred to a plastic grid placed<br />
over a 6-L container filled with distilled water. After five days, when<br />
the seedlings were well-established, distilled water was replaced by<br />
nutrient solution (Yoshida et al., 1976) that was renewed every<br />
week. When the seedlings were 21-days-old, the nutrient solution<br />
was changed to Yoshida solution supplemented with 120 mM NaCl<br />
and after a further seven days, the third leaves were harvested,<br />
frozen in liquid nitrogen and stored at -80°C until further use. The<br />
experiments were performed in triplicate to obtain three<br />
independent samples of rice seedlings for protein and RNA<br />
analysis.<br />
Protein extraction and two-dimensional electrophoresis (2DE)<br />
The leaves were ground in liquid nitrogen and suspended in 50 mM<br />
sodium acetate of pH 5.0. The homogenate was centrifuged at<br />
14,400 g for 10 min. The supernatant was transferred to a new tube<br />
and 50% trichloroacetic acid was added to a final concentration of<br />
10% and the mixture was allowed to precipitate on ice for 30 min.<br />
Each sample was then centrifuged at 14,400 g for 10 min to obtain<br />
a protein pellet. After the pellet was washed with 100 µl ice-cold<br />
ethanol and resuspended in 100 µl lysis solution (8 M urea, 4%<br />
CHAPS, 40 mM Tris-base), the protein concentration was<br />
determined (Bradford, 1976). The protein samples were then<br />
diluted into the rehydration buffer (7 M urea, 2 M thiourea, 2% (w/v)<br />
CHAPS, 2 mM DTT, 0.8% (w/v) IPG buffer and 0.2% bromophenol<br />
blue), and allowed to rehydrate for at least 1 h on ice. Samples (100<br />
µg) were then loaded onto immobilized pH gradient (IPG) strips (7<br />
cm, pH 4 to 7, pH 3 to 10, GE Healthcare, Sweden), and isoelectric<br />
foc<strong>using</strong> (IEF) was conducted (IPGphor TM Isoelectric Foc<strong>using</strong><br />
System, GE Healthcare, Sweden). IEF was performed at 400, 1000<br />
and 2000 V for 1, 12 and 1 h, respectively. After the IEF run, the<br />
IPG strip was then equilibrated in equilibration buffer [62.5 mM Tris-<br />
HCl Ph 6.8, 2.5% sodium dodecyl sulfate (SDS), 10% (v/v) glycerol<br />
and 5% (v/v) 2-mercaptoethanol] for two periods of 15 min each.<br />
The second dimension SDS electrophoresis was performed in<br />
12.5% polyacrylamide gels (Hoefer SE600, GE Healthcare, USA).<br />
The gels were stained with 0.1% colloidal Coomassie Brilliant Blue<br />
(CBB) G-250. The relative molecular mass of each protein was<br />
determined <strong>using</strong> standard markers (Amersham Bioscience, USA)<br />
and the isoelectric point (pI) by the migration of the protein spots on<br />
the IPG strip. The positions of individual proteins on the gels were<br />
evaluated automatically with 2-Dimension software (SineGene,<br />
USA).
Table 1. Primers sequences for RT-PCR analysis and their product size.<br />
Jankangram et al. 16159<br />
Primer name Forward primer Reverse primer<br />
Product<br />
size (bp)<br />
23 kDa polypeptide PSII (PSII-23) CCAGGAAGTTTGTCGAGAGC GAAACACACACGCACACACA 162<br />
Rubisco large subunit (Rubisco) GCTGCGGAATCTTCTACTGG GTAGAGCGCGTAAGGCTTTG 229<br />
Rubisco activase (RCA) TGTGGAGAACATTGGCAAGA CGCAGAACCGTAGAAGGAAC 223<br />
Putative oxygen evolving complex protein<br />
(OEC18)<br />
Fructose-bisphosphate aldolase, chloroplast<br />
precursor, putative, expressed (FBA)<br />
Sedoheptulose-1,7-bisphosphatase precursor<br />
(SBP)<br />
GCCAAGCCAGTAAAGCAAAG TGAAGTCGACGCACATTCTC 181<br />
GGGCGGAGACCTTCTTCTAC GTTCATCGCGTTCAGGTTCT 236<br />
CTCTTGATGGGTCCAGCATT ACATGCTGCCATTTTCCTTC 214<br />
40 kDa thylakoid lumen PPIase (TLP40) GGCACTGAGTAATGGGAGGA GCTTTGGAGCTACTGCATCC 152<br />
Phosphoglycolate phosphatase (PGP) CGATTTCCCCAAAGACAAGA ACCCTGGATTCTCACGAATG 242<br />
2-Cys peroxiredoxin BAS1, (Prx) TGAGACCATGAGGACCCTTC GATCAGACGAGCACACGGTA 244<br />
Thioredoxin Type H (Trx) TGCCGACCTTCCTATTCATC TCGCATGATATTCGAGGACA 240<br />
salT (salT) GGAATATGCCATTGGTCCAT GTCTTGCAGTGGAATGCTGA 214<br />
Ubiquitin 5 (UBQ5) ACCACTTCGACCGCCACTACT ACGCCTAAGCCTGCTGGTT 69<br />
Gel scanning and computer analysis<br />
The CBB-stained gels were scanned <strong>using</strong> a Cannon scanner<br />
(SineGene, USA) at a resolution of 600 dpi. Image editing, spot<br />
detection and protein quantification were carried out with 2-<br />
Dimension software (SineGene, USA). The gel scanning protocol<br />
was first subjected to background subtraction and smoothed to<br />
produce a synthetic gel image. The different gel patterns were<br />
compared, some spots were manually edited and matched to each<br />
other and then the quantities of matched spots were determined.<br />
The amount of a protein spot was expressed as the volume,<br />
defined as the sum of the intensities of all the pixels that made up<br />
the spot. The spot volumes were normalized as percentage of the<br />
total volume in all of the spots present in the gel.<br />
Mass spectrometry and database search<br />
The protein spots were excised <strong>from</strong> the polyacrylamide gels,<br />
digested with trypsin and subjected to MALDI-TOF-MS analysis at<br />
the Bio Service Unit at the National Science and Technology<br />
Development Agency (Bangkok, Thailand). The generations of<br />
peak lists of peptide mass fingerprints <strong>from</strong> raw MS data were<br />
conducted by Mascot software (Matrix Science, London, UK,<br />
www.matrixscience.com). The acquired peak lists were analyzed by<br />
searching NCBI database with the Mascot software.<br />
RNA extraction and RT-PCR assay of gene transcripts<br />
RNA was isolated <strong>from</strong> leaf tissue previously frozen and ground in<br />
liquid nitrogen <strong>using</strong> the RNeasy plant mini kit (Qiagen, USA)<br />
according to the manufacturer’s instructions. The quality and<br />
quantity of the isolated RNA was determined <strong>using</strong> denaturing<br />
formaldehyde-MOPS agarose gels and spectrophotometric analysis<br />
of the absorbance at 260 nm. cDNA was synthesized <strong>from</strong> one<br />
microgram of DNAse I–treated total RNA <strong>using</strong> the QuantiTect<br />
Reverse Transcription kit (Qiagen, USA) according to the<br />
manufacturer’s protocol. The cDNA products were used as<br />
templates for PCR amplification of gene transcripts as described in<br />
Boxall et al. (2005). The following conditions were used for the PCR<br />
reactions: pre-denaturation at 94°C (1 min) followed by 20 to 35<br />
cycles consisting of 30 s at 95°C (denaturing), 30 s at 55°C<br />
(annealing), 1 min at 72°C (extension) and a final extension for 7<br />
min at 72°C. 12 pairs of forward and reverse primers were used<br />
(Table 1). The primers were designed <strong>from</strong> the nucleotide<br />
sequences of genes encoding ten proteins identified in this study,<br />
one house-keeping gene, ubiquitin5 (UBQ5) (Jain et al., 2006) and<br />
a previously reported salt-regulated gene (salT) (Claes et al., 1990)<br />
<strong>using</strong> Primer3 (http://frodo.wi.mit.edu/primer3/). The PCR products<br />
<strong>from</strong> RT-PCR amplifications were separated on 3% (w/v) agarose<br />
gels and stained with ethidium bromide. The specificity of the<br />
primers was confirmed <strong>from</strong> the size of the PCR band and through<br />
cloning (Topo TA, Invitrogen) and sequencing the PCR products
16160 Afr. J. Biotechnol.<br />
(The Genome Analysis Centre, Norwich, UK) to obtain the<br />
anticipated sequence. Photographic documentation was performed<br />
<strong>using</strong> a gel documentation system (GENEFLASH, Syngene Bioimaging).<br />
For quantitation of relative band intensities, the pixel<br />
intensities of the RT-PCR products were analyzed <strong>using</strong><br />
Metamorph software (Molecular Devices, USA) and normalized<br />
relative to the abundance of the UBQ5 loading control.<br />
RESULTS<br />
Protein expression in leaves<br />
Representative 2DE profiles of leaf proteins <strong>from</strong> control<br />
and salt-stress seedlings of KDML 105 and Pokkali are<br />
shown in Figures 1 and 2, respectively. The total number<br />
of well-separated and reproducible CBB-stained protein<br />
spots was lower in KDML 105 (200) than Pokkali (350),<br />
but matched reproducibly among triplicate gels. From the<br />
difference map generated by the 2-Dimension software,<br />
more than 100 protein spots showed different intensities<br />
between the control and salt-treated conditions. Proteins<br />
differing by at least 3-fold in average intensity between<br />
the control and the salt-treated group were recorded and<br />
confirmed by visual inspection of the stained gels. For KDML<br />
105, salinity treatment induced 25 differential protein spots,<br />
16 up-regulated and nine down-regulated while in<br />
Pokkali, 32 differential spots were detected of which 25<br />
and seven were up-regulated and down-regulated, respectively.A<br />
total of 24 differential protein spots (7 <strong>from</strong><br />
KDML 105 and 17 <strong>from</strong> Pokkali, indicated by arrows in<br />
Figures 1 and 2) were excised <strong>from</strong> three replicate gels<br />
and analyzed. Of these, 12 spots matched the known<br />
proteins with significant (P ≤ 0.05) scores (Table 2). The<br />
number of matched peptides ranged <strong>from</strong> 4 to 13, and<br />
percent sequence coverage <strong>from</strong> 19 to 51%.<br />
All identifications showed a good correlation of<br />
theoretical and experimental pI and molecular weight<br />
(MW). Three salt-induced proteins (number 1 to 3)<br />
(Figure 1) were identified in KDML 105, while nine<br />
proteins (number 4 to 12) (Figure 2) were more abundant<br />
following NaCl stress in Pokkali. For the remaining 12<br />
spots, no significant matches were found due to either a<br />
mixture or a limited amount of protein recovered <strong>from</strong> the<br />
gels.<br />
The majority of the proteins identified as increased in<br />
the salt stressed rice seedlings were associated with a<br />
function in photosynthesis, oxygen evolution and the<br />
Calvin cycle; others were involved in photorespiration and<br />
antioxidant defense systems. In KDML 105, the two that<br />
increased in amount were identified as the 23 kDa<br />
polypeptide of photosystem II (PSII-23) and Rubisco<br />
activase (RCA). The third, which decreased following<br />
salt-stress, was identified as ribulose bisphosphate<br />
carboxylase/oxygenase large subunit (Rubisco). The nine<br />
proteins identified in Pokkali were Rubisco, PSII-23,<br />
putative oxygen evolving complex protein (OEC18),<br />
fructose-bisphosphate aldolase chloroplast precursor<br />
(FBA), sedoheptulose 1,7-bisphosphatase precursor<br />
(SBP), 40 kDa thylakoid lumen PPIase (TLP40), phosphoglycolate<br />
phosphatase (PGP), 2-cys peroxiredoxin<br />
chloroplast precursor protein (Prx) and thioredoxin type H<br />
(Trx).<br />
Effects of salt stress on gene expression in rice<br />
leaves<br />
The mRNA encoding the ten proteins identified by proteomics,<br />
plus two additional control genes (salt-regulated<br />
gene, salT and the house-keeping gene ubiquitin5,<br />
UBQ5), was amplified <strong>using</strong> RT-PCR. Transcripts of all<br />
12 genes were detected in both cultivars (Figure 3). In<br />
KDML 105, the relative abundance of FBA, SBP, TLP40,<br />
PGP, Trx and RCA mRNA increased in the saline<br />
conditions, while the amounts of PSII-23, OEC18, Prx<br />
and Rubisco remained the same as in the control (Figure<br />
3a). In Pokkali, the abundance of all transcripts but<br />
Rubisco increased (Figure 3b), consistent with the<br />
corresponding proteins. Transcripts of the positive control<br />
gene salT were salt-induced in both varieties but more so<br />
in KDML 105 while the abundance of transcripts<br />
encoding the control house-keeping gene UBQ5 differed<br />
little between control and salt-stressed tissues (Figure<br />
3c).<br />
DISCUSSION<br />
Salt-stressed rice leaf proteome<br />
We compared the salt-responsive proteomes <strong>from</strong> the<br />
leaf lamina of two contrasting rice varieties. The majority<br />
of proteins identified at increased levels in the saline<br />
growth medium in the salt-tolerant cultivar Pokkali were<br />
those related to photosynthesis, photorespiration and<br />
defense against oxidative stress. Of the three that could<br />
be identified in KDML 105, the levels of two (PSII-23,<br />
RCA) increased in saline conditions while the level of<br />
Rubisco was dramatically decreased (spot number 2)<br />
(Figure 1) in contrast to the substantially increased level<br />
in Pokkali (spot number 11) (Figure 2). The reduction in<br />
Rubisco under salt stress directly affects photosynthetic<br />
efficiency and growth of salt-sensitive rice genotypes<br />
(Singh et al., 2007). The up-regulation of proteins<br />
involved in photosynthesis (PSII-23, OEC18, Rubisco,<br />
FBA and SBP; Figure 2) in the tolerant genotype Pokkali<br />
points to a higher adaptive ability to adjust the efficiency<br />
of its photosynthetic machinery in response to salt stress<br />
(Cha-um et al., 2010).<br />
Similarly, the increased phosphoglycolate phosphatase<br />
(spot number 9, Figure 2), which is the first enzyme in the<br />
photorespiratory pathway in Pokkali may indicate
(a) (b)<br />
(c) (d)<br />
Jankangram et al. 16161<br />
Figure 1. 2DE-PAGE analysis of proteins extracted <strong>from</strong> leaves of rice cv. KDML 105. 100 µg of proteins<br />
<strong>from</strong> control plants was loaded on IPG strips with a linear gradient of (a) pH 3 to 10 and (c) pH 4 to 7. 100<br />
µg of proteins <strong>from</strong> salt-stressed plants was loaded on IPG strips with a linear gradient of (b) pH 3 to10<br />
and (d) pH 4 to 7. The second dimensional separation was performed <strong>using</strong> a 12.5% polyacrylamide gel<br />
stained with CBB. Proteins showing differential amount between the control and salt-stressed conditions<br />
are shown in circles, while those excised for peptide mass fingerprint analysis are indicated by arrows<br />
4<br />
and those identified are numbered.<br />
stimulation of photorespiration as an electron sink to help<br />
minimize reactive oxygen species (ROS) production<br />
provoked by the increased photosynthetic flux. The low<br />
<strong>internal</strong> CO2 concentration in salt-stressed leaves due to<br />
a response of stomata closure, can lead to enhanced<br />
rates of photorespiration (Rajmane and Karage, 1986;<br />
Fedina et al., 1994). This is an important mechanism for<br />
energy dissipation in order to prevent photoinhibition<br />
occurring through damage to chloroplast components<br />
(Osmond et al., 1997) as well as generating glycine for<br />
the synthesis of glutathione, a component of the oxidative<br />
stress response system (Noctor et al., 1999).<br />
Salt stress imposed on rice plants is known to induce a<br />
secondary oxidative stress (Demiral and Türkan 2005;<br />
Kim et al., 2005; Parker et al., 2006). The increased<br />
levels of proteins involved in defense against oxidative<br />
stress (for example, Prx and Trx) in Pokkali (spot number<br />
10 and 12) (Figure 2) are likely to contribute to more<br />
efficient ROS detoxification and thus reduce cellular<br />
damage (Vaidyanathan et al., 2003; Dooki et al., 2006).
16162 Afr. J. Biotechnol.<br />
(a) (b)<br />
(c) (d)<br />
Figure 2. 2DE - PAGE analysis of proteins extracted <strong>from</strong> leaves of rice cv. Pokkali. 100 µg of<br />
proteins <strong>from</strong> control plants was loaded on IPG strips with a linear gradient of (a) pH 3 to 10 and<br />
(c) pH 4 to 7. 100 µg of proteins <strong>from</strong> salt-stressed plants was loaded on IPG strips with a linear<br />
gradient of (b) pH 3 to 10 and (d) pH 4 to 7. The second dimensional separation was performed<br />
<strong>using</strong> a 12.5% polyacrylamide gel stained with CBB. Proteins showing differential amount<br />
between the control and salt-stressed conditions are shown in circles, while those excised for<br />
peptide mass fingerprint analysis are indicated by arrows and those identified are numbered.<br />
The increase in TLP40 protein, a cyclophilin with a<br />
proposed role in maintenance of the photosynthetic<br />
complexes (Peltier et al., 2002) may also contribute to<br />
maintenance of metabolic activities. This is consistent<br />
with the visual observation of more pronounced leafyellowing<br />
in the salt-sensitive KDML 105 plants.<br />
Earlier proteomic analyses of the salt-stress response<br />
in the rice leaf lamina have reported changes in the<br />
abundance of proteins with functions similar to those<br />
found in this study. Comparing 2DE profiles of rice leaves<br />
(cv. Nipponbare; moderately salt-tolerant), Kim et al.<br />
(2005) detected 55 differentially-expressed CBB-stained<br />
spots, of which 47 were increased over the control. They<br />
were able to identify 33, most of which were involved in<br />
major metabolic processes related to photosynthetic<br />
carbon assimilation and photorespiration. Our study has<br />
also identified an increased level of several of these in<br />
Pokkali (Rubisco, FBA, PGP, SBP) as well as proteins of<br />
the photosystem II complex (PSII-23, OEC18) while only<br />
the PSII-23 protein and RCA were detected at elevated<br />
levels under saline conditions in KDML 105. Considering<br />
the central role of all these enzymes in carbon<br />
metabolism and energy transduction, their increased<br />
abundance in Pokkali under salt stress in our study most
Jankangram et al. 16163<br />
Table 2. Identification of salt responsive proteins in the leaves of rice seedlings cv. KDML 105 (spot 1 to 3) and cv. Pokkali (spot 4 to 12) through MALDI - TOF MS.<br />
Spot<br />
number<br />
Matched protein Score<br />
Measured<br />
MW/pI<br />
Predicted<br />
MW/pI<br />
Sequence<br />
coverage (%)<br />
Matched<br />
peptide<br />
Intensity<br />
ratio<br />
Accession<br />
number<br />
1<br />
23 kDa polypeptide<br />
photosystem II (PSII-23)<br />
81 26.89/6.41 27.09/8.66 45 10 +4 NP - 001058863<br />
2<br />
Rubisco large subunit<br />
(Rubisco)<br />
67 62.30/6.66 53.44/6.04 25 13 -7 ABA96140<br />
3 Rubisco activase (RCA) 90 27.12/4.22 21.73/4.78 39 7 +5 AAK31173<br />
4<br />
5<br />
6<br />
7<br />
8<br />
9<br />
10<br />
11<br />
23 kDa polypeptide of<br />
photosystem II<br />
(PSII-23)<br />
putative oxygen evolving<br />
complex protein (OEC18)<br />
Putative fructosebisphosphate<br />
aldolase,<br />
chloroplast precursor<br />
(FBA)<br />
Sedoheptulose-1,7bisphosphatase<br />
precursor<br />
(SBP)<br />
40 kDa thylakoid lumen<br />
PPIase (TLP40)<br />
Phosphoglycolate<br />
phosphatase (PGP)<br />
2-Cys peroxiredoxin<br />
BAS1,<br />
chloroplast precursor<br />
(Prx)<br />
Rubisco large subunit<br />
(Rubisco)<br />
67 26.36/7.18 27.17/9.06 32 8 +4 AAB82135<br />
104 19.82/8.24 19.77/7.88 35 6 +3 AAM93722<br />
90 43.6/5.64 41.80/6.07 31 9 +6<br />
96 45.61/5.10 42.73/5.83 22 8 +4<br />
ABA91631<br />
AAO22558<br />
93 47.21/4.68 46.79/4.82 19 7 +5 NP - 001061695<br />
81 38.10/5.15 39.81/6.22 25 8 +9 CAH67343<br />
62 27.23/4.80 28.30/5.67 21 4 +5 NP - 001047050<br />
100 25.06/4.90 25.73/6.23 30 7 +7 ABB47308<br />
12 Thioredoxin Type H (Trx) 98 14.10/5.21 14.06/4.92 51 6 +5 1WMJ - A
16164 Afr. J. Biotechnol.<br />
(c) (c) cc<br />
(a) KDML 105<br />
(b) Pokkali<br />
Figure 3. Comparison of relative transcript abundance for genes identified via 2DE-PAGE in leaves <strong>from</strong> (A)<br />
KDML 105 and (B) Pokkali under salt-stress for 7 days (shaded) and control (open). The histogram shows<br />
mean relative transcript abundance <strong>from</strong> three biological replicates (+/- standard error) normalized to UBQ5.<br />
Representative semi-quantitative RT-PCR results are shown beneath (C) for salt stressed (s) and control (c)<br />
samples.<br />
likely reflects altered patterns of carbon flux that may not<br />
be achieved successfully by KDML 105. The fact that we<br />
could not detect a similar elevation of most of these<br />
proteins in KDML 105, and indeed observed a reduction<br />
in Rubisco in saline conditions, may indicate why it is so<br />
sensitive to salt stress. We therefore further compared
the levels of mRNA transcripts for the proteins to<br />
determine whether there were also differences between<br />
the cultivars at this level of gene expression.<br />
Relationship between changes in the level of<br />
transcripts and proteins<br />
In KDML 105, the levels of several transcripts were<br />
unaltered in saline growth conditions (PSII-23, OEC18,<br />
Prx, Rubisco) while levels of the remainder increased.<br />
This contrasts with the proteins of KDML 105 identified in<br />
our study. Levels of RCA strongly increased at both<br />
mRNA and protein level in saline conditions, whereas<br />
PSII-23 was clearly up-regulated at the protein level but<br />
its mRNA abundance was unchanged. The level of<br />
Rubisco transcript was unaltered by salinity even though<br />
the amount of protein decreased. In salt-stressed KDML<br />
105, an increase in the relative transcript abundance was<br />
obtained for several genes (FBA, SBP, Trx) where the<br />
protein products were not detected. In Pokkali, the<br />
corresponding mRNA transcripts encoding all nine upregulated<br />
proteins were increased. The level of transcripts<br />
of RCA, where the protein was not detected, also<br />
increased under saline conditions. Similarly, in both<br />
KDML 105 and Pokkali, the levels of the control saltregulated<br />
transcript SalT increased. This lack of<br />
correlation has been reported by Malakshah et al. (2007)<br />
in which they found no concordance between the<br />
changes in levels of transcripts and proteins of three saltresponsive<br />
genes (remorin, HIR and 14-3-3 protein) in<br />
rice roots. The elevated transcript abundance for<br />
important photosynthetic and protective genes in even<br />
unstressed Pokkali leaves may provide this salt-tolerant<br />
rice variety with better innate adaptation to salt stress<br />
compared to the sensitive KDML 105. A similar observation<br />
was found in a recent comparative transcriptome<br />
map of salinity stress response between Pokkali and<br />
IR64, a salt-sensitive cultivar (Kumari et al., 2009). These<br />
genes included functions in signaling (such as calmodulin<br />
binding protein and the zinc finger transcription factor,<br />
OSAP1), ion transport (including the vacuolar H + -ATPase<br />
and a voltage-dependent anion channel), protective<br />
proteins (such as late embryogenesis abundant proteins<br />
and glutathione-S-transferase II) and proteins with roles<br />
in photosynthesis (Rubisco small subunit).<br />
In conclusion, elevated levels of proteins involved in<br />
photosynthesis, photorespiration and the oxidative stress<br />
detoxification system play important roles in conferring<br />
tolerance to salt stress in the rice cultivar Pokkali by<br />
providing more efficient metabolic readjustment, thus<br />
leading to higher photosynthetic efficiency and hence a<br />
better growth performance. In the economically important<br />
but salt sensitive variety KDML 105, transcripts of some<br />
genes examples are FBA, SBP, TLP40, PGP, Trx and<br />
RCA; were up-regulated upon salt stress and increase in<br />
Jankangram et al. 16165<br />
only two proteins could be detected (PSII-23, RCA). In<br />
addition, levels of the major leaf protein Rubisco<br />
decreased in KDML 105, an observation that is frequently<br />
observed after tissue damage. This provides evidence<br />
that although KDML 105 expresses genes for several<br />
proteins needed for salt tolerance, it is unable to induce<br />
these stress-responsive processes at both transcriptional<br />
and post-transcriptional levels as effectively as Pokkali.<br />
With this information, the challenge is how to under-stand<br />
the regulatory basis for these differences. Improve-ments<br />
to salinity tolerance in economically important cultivars<br />
like KDML 105 will require a comprehensive and<br />
integrated knowledge of the transcriptomic, proteomic<br />
and metabolomic responses to salt. Such large scale<br />
functional genomics studies should allow the key<br />
regulators of salt-tolerance to be elucidated and thus<br />
facilitate attempts to either breed or engineer these traits<br />
into salt-sensitive cultivars like KDML 105.<br />
ACKNOWLEDGEMENTS<br />
This work was supported by a Ph. D. scholarship <strong>from</strong><br />
the Thailand Commission on Higher Education to the first<br />
author and a Khon Kaen University Research Grant to<br />
the corresponding author.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16167-16174, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1749<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Genetic diversity and relationship analysis among<br />
accessions of Aegilops ssp. in Turkey <strong>using</strong> amplified<br />
fragment length polymorphism (AFLP) markers<br />
Ilhan Kaya 1,2 *, Asude Çallak Kirişözü 2 , Figen Yildirim Ersoy 3,2 , Şahin Dere 4,2 and Mahinur S.<br />
Akkaya 2<br />
1 Department of Agriculture, Plant Protection, Van Yuzuncuyil University, Van, TR-65080, Turkey.<br />
2 Department of Chemistry, Biochemistry and Biotechnology Programs, Middle East Technical University,<br />
Ankara, TR-06531, Turkey.<br />
3 Department of Biology, Uludag University, Gorukle, Bursa, TR-16059. Turkey.<br />
4 Department of Field Crops, Agricultural Faculty, Ordu University, Ordu, TR-52200, Turkey.<br />
Accepted 7 September, 2011<br />
Amplified fragment length polymorphism (AFLP) DNA markers were used to assess the genetic<br />
diversity and relationships between 55 accessions of genus Aegilops, including the species Aegilops<br />
triuncialis L. (UUCC), Aegilops geniculata Roth (MMUU), Aegilops cylindrica Host (CCDD) and Aegilops<br />
umbellulata Zhuk (UU). The samples were collected <strong>from</strong> Aegean region and East Anatolia, Turkey. 16<br />
AFLP selective primer combinations generated a total of 3200 polymorphic amplification products. 50<br />
Aegilops accessions were analyzed <strong>using</strong> the data analysis software, unweighted pair-group method<br />
arithmetic average (UPGMA) method and numerical taxonomy and multivariate analysis system<br />
(NTSYSpc-2.02k). The similarity index coefficients were calculated according to simple matching<br />
coefficient. Using 16 AFLP primer combinations, species <strong>from</strong> Aegean region and east Anatolia were<br />
clustered as four major groups. Aegilops species having U genome clustered together and A. cylindrica<br />
host was out grouped.<br />
Keywords: Aegilops cylindrica, Aegilops triuncialis, Aegilops umbellulata, Aegilops geniculata, amplified<br />
fragment length polymorphism (AFLP), Li-COR, genetic relationship, unweighted pair-group method arithmetic<br />
average (UPGMA), principle coordinate analysis.<br />
INTRODUCTION<br />
The wild species of Triticeae family, especially the genus<br />
Aegilops L. are valuable sources of genetic variation for<br />
wheat improvement since they possess the genetic<br />
background of all the cultivated wheat having still unidentified<br />
important characters such as resistance to<br />
different biotic and abiotic stresses (Rekika et al., 1998;<br />
Zaharieva et al., 2004). The genus Aegilops L. has been<br />
the most intensively studied group of grasses, especially<br />
since it is closely related to the cultivated wheat (van<br />
Slageren, 1994). Aegilops ssp. is thought to be a genetic<br />
reserve for the improvement of the wheat cultivars<br />
*Corresponding author. E-mail: ilhank@yyu.edu.tr. Tel: +90 533<br />
323 5449. Fax: +90 432 225 1104.<br />
(Damania, 1993). Aegilops spreads mainly in central Asia<br />
and Mediterranean region (van Slageren, 1994). Turkey<br />
is the center of diversity for this genus and it is rich in wild<br />
populations of tetraploid species: Aegilops triuncialis L.<br />
(UUCC), Aegilops geniculata Roth (MMUU), Aegilops<br />
cylindrica Host (CCDD) and diploid species: Aegilops<br />
umbellulata Zhuk. (UU). A. cylindrica and A. triuncialis<br />
are widely distributed in Turkey adding up to 15 species<br />
of Aegilops (Davis, 1985). Ecogeographic studies are<br />
necessary as they determine the genetic relationship and<br />
also guide conservation programs for the target plant<br />
species (Anikster and Noy-Meir, 1991). DNA-based<br />
molecular markers are particularly useful both for<br />
quantifying genetic diversity within plant species and for<br />
identifying and characterizing closely related genotypes<br />
(Jasieniuk and Maxwell, 2001). Molecular markers can
16168 Afr. J. Biotechnol.<br />
provide information needed to select genetically diverse<br />
parents for developing breeding and mapping populations,<br />
among which the AFLP markers have been<br />
successfully used to determine genetic diversity in many<br />
plant species (Sharma et al., 1996; Pillay and Myers,<br />
1999).<br />
AFLP markers are generated by selective amplification<br />
of a subset of restriction fragments <strong>from</strong> total genomic<br />
DNA (Vos et al., 1995; Mueller and Wolfenbarger 1999).<br />
The reproducibility, heritability, effectiveness and reliability<br />
of these amplified DNA products have substantial<br />
advantages when compared with other marker systems<br />
(Russell et al., 1997). The PCR-based AFLP markers are<br />
amenable to automation for high-throughput genotyping<br />
and, being anonymous, do not require any sequence<br />
information (Rouf Mian et al., 2002). AFLP fingerprinting<br />
is considerably informative, allowing the survey of<br />
variation in more than 50 co-amplified restriction fragments<br />
in each AFLP reaction (Incirli and Akkaya, 2001;<br />
Sudupak et al., 2004; Yildirim and Akkaya, 2006). Li-COR<br />
IR 2 automated DNA sequencers and associated software<br />
have been demonstrated to efficiently generate and<br />
analyze complex AFLP patterns of various genomes (Qui<br />
et al., 1999; Remington et al., 1999). We applied AFLP<br />
markers to characterize the genetic diversity and<br />
relationships among different populations of Aegilops in<br />
Turkey <strong>using</strong> Li-COR instrument.<br />
MATERIALS AND METHODS<br />
The materials of the study consist of A. cylindrica, A. geniculata,<br />
A.truncialis and A. umbellulata gathered <strong>from</strong> the Aegean and the<br />
Eastern Anatolia Regions in 2005. 50 individuals <strong>from</strong> a total of 11<br />
populations belonging to these plants were collected (Table 1).<br />
DNA isolation<br />
The seeds of Aegilops were germinated and DNA was isolated <strong>from</strong><br />
the seedlings of two weeks old leaves starting with 200 mg young<br />
leaf tissue <strong>using</strong> a minor modified cetyl trimethyl ammonium<br />
bromide (CTAB) method.<br />
AFLP analysis<br />
AFLP analysis was carried out according to Vos et al. (1995) <strong>using</strong><br />
fluorescently labeled primers and bands were detected <strong>using</strong> a Li-<br />
COR automated sequencer (model 4300). All the chemicals and<br />
enzymes apart <strong>from</strong> 10X reaction buffer and Taq DNA polymerase<br />
were present in the kit provided by Li-COR (IRDye Fluorescent<br />
AFLP Kit for Large Plant Genome Analysis). Genomic DNA (200<br />
ng) was double digested with 1.5 units each of EcoRI and MseI<br />
(MBI Fermentas) in a final volume of 20 µl and incubated at 37°C<br />
for 2 h. 7.5 and 75 pmols of adaptors EcoRI and MseI, respectively,<br />
were ligated to the resulting fragments (20 µl of the digestion mix)<br />
<strong>using</strong> 1 unit of T4 DNA ligase (Roche diagnostics GmbH) in a final<br />
volume of 25 µl buffer ligase 1X and incubated for 2 h at 25°C. The<br />
ligation mix was diluted 1/10 and 2.5 µl were added to the<br />
preamplification reaction containing AFLP Pre-amp primer mix, 1X<br />
PCR reaction buffer, 2.5 U Taq DNA polymerase (Roche<br />
diagnostics GmbH) in a final volume of 25 µl. Preamplification was<br />
performed in a PTC-100 MJ Research Inc. thermocycler as in the<br />
following steps: 2 min 95°C, 20 cycles of 30 s at 94°C, 1 min at<br />
56°C, 1 min at 72°C and 4 min at 72°C. The preamplification mix<br />
was diluted to 1/40 and 2 µl was added to the selective<br />
amplification reaction, containing 1 µM IRDye 700 labeled EcoRI<br />
primer A, 1 µM IRDye 800 labeled EcoRI primer B and 1 µM MseI +<br />
3 (Table 2), reaction buffer lX, 0.25 mM each dNTPs and 1 unit of<br />
Taq DNA polymerase in a final volume of 20 µl. Selective<br />
amplification was performed on a Stratagene Mx3005P Real Time<br />
Thermal Cycler as follows: 13 touchdown cycles (- 0.7°C per cycle)<br />
of 30 s at 94°C, 30 s at 65°C, l min at 72°C; 23 cycles of 30 s at<br />
94°C, 30 s at 56°C, 1 min at 72°C and 10 min at 72°C. A total of 16<br />
selective primer combinations were used.<br />
The PCR products were separated by electrophoresis in a 6.5%<br />
polyacrylamide gel <strong>using</strong> the Li-COR 4300 DNA Analyzer and<br />
analyzed <strong>using</strong> the Saga Generation Software. Genetic similarity<br />
and diversity analysis among 55 Aegilops varieties were performed<br />
<strong>using</strong> the data analysis software, UPGMA method and NTSYSpc-<br />
2.02k (Rholf, 1997). The similarity index coefficients were<br />
calculated according to simple matching (SM) coefficient (Rholf,<br />
1997).<br />
RESULTS<br />
Turkey is rich in tetraploid species: A. triuncialis L.<br />
(UUCC), A. geniculata Roth (MMUU), A. cylindrica Host<br />
(CCDD) and diploid species: A. umbellulata Zhuk. (UU).<br />
Thus, it is important to find the genetic diversity of these<br />
species in Turkey. 16 selective primer combinations<br />
resulted in 3200 polymorphic bands to measure the<br />
genetic diversity within 55 accessions of Aegilops genus.<br />
A dendrogram was generated <strong>from</strong> the data <strong>using</strong> the<br />
UPGMA and the program NTSYSpc 2.02k (Figure 1).<br />
Principle coordinate analysis of the data was also<br />
determined (Figures 2 and 3).<br />
The genetic diversity within the 55 accessions of A.<br />
triuncialis L. (UUCC), A. geniculata Roth (MMUU), A.<br />
cylindrica Host (CCDD) and A. umbellulata Zhuk were<br />
calculated <strong>using</strong> 16 selective primer combinations which<br />
resulted in 3200 polymorphic bands (UU). In the tree, the<br />
species sharing the U genome formed a main cluster and<br />
A. cylindrica which is intensely associated with A.<br />
squarrosa (DD), was clearly different <strong>from</strong> the other<br />
species, due to the influence of the presence of distant D<br />
genome. This genome has undergone less divergence<br />
than other diploid genomes during evolution and<br />
therefore appears to be less modified and is well<br />
separated within the Triticeae (Damania, 1993; Badaeva<br />
et al., 1996).<br />
AFLP based UPGMA dendrogram of Aegilops accessions<br />
is presented in Figure 1, in which there are four<br />
main clusters: A. cylindrica (Ac), A. triuncialis (At), A.<br />
umbellulata (Au) and A. geniculata (Ag). The closest<br />
genetic similarity between genotypes (0.980 simple<br />
matching coefficient) was determined between Ag9 and<br />
Ag10 genotypes. Other genetic similarity results are respectively<br />
as follows: the similarity between Au5 and Au6<br />
(0.958 simple matching coefficient), the similarity between<br />
At9 and At10 (0.948 simple matching coefficient), the
Table 1. The species of Aegilops L. collected <strong>from</strong> Turkey: sample numbers, locations, species and genomes.<br />
S/N Location (city) Coordinate Species Genome<br />
1 Uşak 38° 40.507N, 029° 18.648E, 928 m A. cylindrica CCDD<br />
2 Uşak 38°40.507N, 029° 18.648E, 928 m A. cylindrica CCDD<br />
3 Uşak 38°40.507N, 029° 18.648E, 928 m A. cylindrica CCDD<br />
4 Uşak 38° 40.507N, 029° 18.648E, 928 m A. cylindrica CCDD<br />
5 Uşak 38° 40.507N, 029° 18.648E, 928 m A. cylindrica CCDD<br />
6 Van 38° 33.794N, 043° 17.839E, 1672 m A. cylindrica CCDD<br />
7 Van 38° 33.794N, 043° 17.839E, 1672 m A. cylindrica CCDD<br />
8 Van 38° 33.794N, 043° 17.839E, 1672 m A. cylindrica CCDD<br />
9 Van 38° 33.794N, 043° 17.839E, 1672 m A. cylindrica CCDD<br />
10 Van 38° 33.794N, 043° 17.839E, 1672 m A. cylindrica CCDD<br />
11 Van 38° 31.868N, 043° 20.808E, 1671 m A. cylindrica CCDD<br />
12 Van 38° 31.868N, 043° 20.808E, 1671 m A. cylindrica CCDD<br />
13 Van 38° 31.868N, 043° 20.808E, 1671 m A. cylindrica CCDD<br />
14 Van 38° 31.868N, 043° 20.808E, 1671 m A. cylindrica CCDD<br />
15 Van 38° 31.868N, 043° 20.808E, 1671 m A. cylindrica CCDD<br />
16 Uşak 38° 40.507N, 029° 18.648E, 928 m A. triuncialis UUCC<br />
17 Uşak 38° 40.507N, 029° 18.648E, 928 m A. triuncialis UUCC<br />
18 Uşak 38° 40.507N, 029° 18.648E, 928 m A. triuncialis UUCC<br />
19 Uşak 38 v 40.507N, 029° 18.648E, 928 m A. triuncialis UUCC<br />
20 Uşak 38° 40.507N, 029° 18.648E, 928 m A. triuncialis UUCC<br />
21 Van 38 v 25.543N, 043° 15.695E, 1664 m A. triuncialis UUCC<br />
22 Van 38° 25.543N, 043° 15.695E, 1664 m A. triuncialis UUCC<br />
23 Van 38° 25.543N, 043° 15.695E, 1664 m A. triuncialis UUCC<br />
24 Van 38° 25.543N, 043° 15.695E, 1664 m A. triuncialis UUCC<br />
25 Van 38° 25.543N, 043° 15.695E, 1664 m A. triuncialis UUCC<br />
26 Van 38° 33.794N, 043° 17.839E, 1672 m A. triuncialis UUCC<br />
27 Van 38° 33.794N, 043° 17.839E, 1672 m A. triuncialis UUCC<br />
28 Van 38° 33.794N, 043° 17.839E, 1672 m A. triuncialis UUCC<br />
29 Van 38° 33.794N, 043° 17.839E, 1672 m A. triuncialis UUCC<br />
30 Van 38° 33.794N, 043° 17.839E, 1672 m A. triuncialis UUCC<br />
31 Van 38 0 25.544N, 043° 15.697E, 1664 m A. umbellulata UU<br />
32 Van 38° 25.544N, 043° 15.697E, 1664m A. umbellulata UU<br />
33 Van 38° 25.544N, 043° 15.697E, 1664m A. umbellulata UU<br />
34 Van 38° 25.544N, 043° 15.697E, 1664m A. umbellulata UU<br />
35 Van 38° 25.544N, 043° 15.697E, 1664m A. umbellulata UU<br />
36 Van 38 v 31.868N, 043° 20.808E, 1671m A. umbellulata UU<br />
37 Van 38° 31.868N, 043° 20.808E, 1671m A. umbellulata UU<br />
38 Van 38 v 31.868N, 043 0 20.808E, 1671m A. umbellulata UU<br />
39 Van 38° 31.868N, 043° 20.808E, 1671m A. umbellulata UU<br />
40 Van 38° 31.868N, 043° 20.808E, 1671m A. umbellulata UU<br />
41 Uşak 38° 40.476N, 029° 16.412E, 902 m A. umbellulata UU<br />
42 Uşak 38° 40.476N, 029° 16.412E, 902 m A. umbellulata UU<br />
43 Uşak 38° 40.476N, 029° 16.412E, 902 m A. umbellulata UU<br />
44 Uşak 38° 40.476N, 029° 16.412E, 902 m A. umbellulata UU<br />
45 Uşak 38° 40.476N, 029° 16.412E, 902 m A. umbellulata UU<br />
46 Izmir 38° 31.229N, 026° 37.433E, 16 m A. geniculata MMUU<br />
47 Izmir 38° 31.229N, 026° 37.433E, 16 m A. geniculata MMUU<br />
48 Izmir 38° 31.229N, 026° 37.433E, 16 m A. geniculata MMUU<br />
49 Izmir 38° 31.229N, 026° 37.433E, 16 m A. geniculata MMUU<br />
50 Izmir 38° 31.229N, 026° 37.433E, 16 m A. geniculata MMUU<br />
51 Uşak 38° 40.620N, 029° 22.638E, 904 m A. geniculata MMUU<br />
Kaya et al. 16169
16170 Afr. J. Biotechnol.<br />
Table 1. Contd<br />
52 Uşak 38° 40.620N, 029° 22.638E, 904 m A. geniculata MMUU<br />
53 Uşak 38° 40.620N, 029° 22.638E, 904 m A. geniculata MMUU<br />
54 Uşak 38° 40.620N, 029° 22.638E, 904 m A. geniculata MMUU<br />
55 Uşak 38° 40.620N, 029° 22.638E, 904 m A. geniculata MMUU<br />
Table 2. MseI and IRDye 700 labeled EcoRI primers used in selective<br />
amplification reaction.<br />
Primer Flourescent label Sequence (5’-3’)<br />
M-CAA - GATGAGTCCTGAGTAACAA<br />
M-CAC - GATGAGTCCTGAGTAACAC<br />
M-CAG - GATGAGTCCTGAGTAACAG<br />
M-CAT - GATGAGTCCTGAGTAACAT<br />
M-CTA - GATGAGTCCTGAGTAACTA<br />
M-CTC - GATGAGTCCTGAGTAACTC<br />
M-CTG - GATGAGTCCTGAGTAACTG<br />
M-CTT - GATGAGTCCTGAGTAACTT<br />
E-AAC IRDye 700 GACTGCGTACCAATTCAAC<br />
E-AAG IRDye 700 GACTGCGTACCAATTCAAG<br />
E-ACA IRDye 700 GACTGCGTACCAATTCACA<br />
E-ACT IRDye 700 GACTGCGTACCAATTCACT<br />
E-ACC IRDye 800 GACTGCGTACCAATTCACC<br />
E-ACG IRDye 800 GACTGCGTACCAATTCACG<br />
E-AGC IRDye 800 GACTGCGTACCAATTCAGC<br />
E-AGG IRDye 800 GACTGCGTACCAATTCAGG<br />
similarities between Au3 and Au4, Ag7 and Ag9 (0.946<br />
simple matching coefficient). The least genetic similarity<br />
between genotypes was found between Au8 and Au9<br />
(0.800 simple matching coefficient). Christiansen et al.<br />
(2002) and Lage et al. (2003) showed similar results and<br />
generally followed the trend that increased geographical<br />
distance correlates with increased genetic distance.<br />
In the analysis of the dendrogram, with 2 and 3<br />
dimensional scaling; it was detected that the genotypes<br />
of Ag2, Ag5, Ag6, Au8 and Au9 had a different branching<br />
pattern <strong>from</strong> the one expected. Ac3, Ac13, At1, At2 and<br />
At15 had different branching patterns and positions <strong>from</strong><br />
other genotypes. It was found that genotypes with high<br />
similarity (Ag6, Ag7, Ag9 and Ag10) and genotypes<br />
gathered <strong>from</strong> similar populations (Au5, Au6 and At9,<br />
At10) had the same branching pattern and positions in<br />
general (Figures 2 and 3). Since the genus Aegilops L. is<br />
a valuable source of genetic variation, the data presented<br />
here might have advantage in various studies in future.<br />
DISCUSSION<br />
Periodical genetic diversity assessments of all kinds of<br />
wild type plant species are very important for many<br />
reasons, but it is more crucial for the wild types of wheat<br />
since they are genome donors of cultivated wheat. Since<br />
the cultivated wheat has a very narrow genetic diversity,<br />
for crop improvement, we always need to investigate the<br />
traits hidden in the wild types or the ancestors of the<br />
wheat, so that we can maintain the sustainable agriculture<br />
to feed ever increasing human population. Thus,<br />
by continual diversity assessment in nature, we can<br />
maintain the most diverse species in gene banks for<br />
conservation and crop improvement purposes. The<br />
effects of environmental changes or climate fluctuations<br />
on the natural diversity can also be traced by continual<br />
analyses. This is especially the case for Aegilops species<br />
in Turkey since the land is the center of origin for these<br />
Aegilops species.
Coefficient<br />
Figure 1. AFLP-based UPGMA dendrogram of Aegilops accessions.<br />
Kaya et al. 16171<br />
Ac1<br />
Ac2<br />
Ac3<br />
Ac4<br />
Ac5<br />
Ac6<br />
Ac7<br />
Ac8<br />
Ac9<br />
Ac10<br />
Ac11<br />
Ac12<br />
Ac13<br />
Ac14<br />
Ac15<br />
At1<br />
At2<br />
At3<br />
At4<br />
At5<br />
At6<br />
At7<br />
At8<br />
At9<br />
At10<br />
At11<br />
At14<br />
At12<br />
At13<br />
At15<br />
Au1<br />
Au2<br />
Au3<br />
Au4<br />
Au5<br />
Au6<br />
Au7<br />
Au10<br />
Au9<br />
Au11<br />
Au12<br />
Au13<br />
Au14<br />
Au15<br />
Ag1<br />
Ag2<br />
Ag3<br />
Ag6<br />
Ag7<br />
Ag9<br />
Ag10<br />
Ag8<br />
Ag4<br />
Ag5<br />
Au8
16172 Afr. J. Biotechnol.<br />
Figure 2. 2D plot generated by principle coordinate analysis.
Figure 3. 3D plot of the principal coordinate analysis of the AFLP data generated by NTSYS.<br />
AFLP marker system to test the genetic diversity is one of<br />
mostly used marker system since, it is multi-locus, thus<br />
highly polymorphic, reproducible and high through-put<br />
instrumentation is available, such as Li-Cor. Thus, in this<br />
study, we preferred to perform analysis <strong>using</strong> AFLP<br />
highly polymorphic marker system. We believe the data<br />
presented here will be a tool for other wheat researchers.<br />
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Anikster Y, Noy-Meir I (1991). The wild-wheat field laboratory at<br />
Ammiad. Isr. J. Bot. 40: 351-362.<br />
Badaeva ED, Friebe B, Gill BS (1996). Genome differentiation in<br />
Aegilops 2. physical mapping of 5S and 18S-26S ribosomal RNA<br />
gene families in diploid species. Genome, 39: 1150-1158.<br />
Christiansen MJ, Andersen SB, Ortiz R (2002). Diversity changes in an<br />
intensively bred wheat germplasm during the 20th century. Mol.<br />
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Damania AB (1993). Biodiversity and wheat improvement. ICARDA,<br />
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Incirli A, Akkaya MS (2001). Assessment of genetic relationships in<br />
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analysis of Lupinus luteus and L. cosentinii <strong>using</strong> fluorescence<br />
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Analysis System. Exeter Software, New York.<br />
Rouf Mian MA, Hopkins AA, Zwonitzer JC (2002). Determination of<br />
genetic diversity in tall fescue with AFLP markers. Crop Sci. 42: 944-<br />
950.<br />
Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W,<br />
Waugh R (1997). Direct comparison of levels of genetic variation<br />
among barley accessions detected by RFLPs, AFLPs, SSRs and<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16175-16180, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1985<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Determination of total polyphenol content and<br />
antityrosinase capacity of mulberrymedicine<br />
(Morusnigra L.) extract<br />
Wu Chun, Xu Li*, Wang Yuancheng, Chen Hu and Huang Xianzhi<br />
College of Biotechnology, Southwest University, Chongqing 400716, China.<br />
Accepted 5 October, 2011<br />
Total polyphenol content and antityrosinase capacity of mulberry medicine extract were evaluated for<br />
its development and utilization. Total polyphenols were extracted <strong>from</strong> mulberry medicine with 70%<br />
alcohol solution. The content of total polyphenols was determined by ultraviolet spectrophotometer and<br />
the capacity of antityrosinase was evaluated by <strong>using</strong> the enzyme-linked immunosorbent assay(ELISA)<br />
method. Results show that the content of polyphenols was up to 8.668 mg/g and tyrosinase halfinhibitory<br />
concentration (IC50) was 12.12 mg/ml. Kinetic study indicated that the mechanism of<br />
tyrosinase inhibition was mixed type inhibition.<br />
Key words:Morusnigra L., extraction of medicine mulberry, polyphenols, tyrosinase.<br />
INTRODUCTION<br />
Tyrosinase (TYR) is widely distributed in human beings,<br />
animals, plants and microorganisms. It is the crucial<br />
enzyme which restricts the output of melanin (Fenoll et<br />
al., 2004). Not only does it have the activity of<br />
monophenol oxidase, but it also has the activity of<br />
diphenol oxidase(Gong et al., 2005; Shi et al., 2005). It<br />
catalyzes the following reactions:<br />
HO<br />
COOH<br />
NH 2<br />
TYR(Diphenol oxidase)<br />
TYR(Monophenol oxidase)<br />
O<br />
O<br />
HO<br />
HO<br />
COOH<br />
NH 2<br />
COOH<br />
Disorders of melanin pigmentation and melanoma can be<br />
attributed to the malfunction of tyrosinase. Tyrosinase<br />
existing in plants is the main cause of their enzymatic<br />
browning, while tyrosinase existing in insects plays an<br />
NH 2<br />
*Corresponding author. E-mail: mulberry@swu.edu.cn.<br />
Fax: 023-68250191.<br />
important role in their tanning process (Fenoll et al.,<br />
2004; Kubo et al., 2003). By inhibiting the activity of<br />
tyrosinase, tyrosinase inhibitors can restraint the<br />
production of melanin; therefore, they have an extensive<br />
prospect in cosmetic,medicine and agriculture. In recent<br />
years, the tyrosinase inhibitors have been investigated<br />
extensively (Chang et al., 2011; Prasad et al., 2010;<br />
Behera et al., 2007; Rangkadilok et al., 2007).<br />
Polyphenols, possessing several phenolic hydroxyls,<br />
are excellent hydrogen or electron donors and have an<br />
amount of antioxidant activity. They can effectively<br />
remove superoxides and hydroxyl radicals (Bouaziz et<br />
al., 2009). Previous researches have already shown that<br />
polyphenols are effective tyrosinase inhibitors (Bouaziz et<br />
al., 2009; Jewell and Ebeler, 2001). Thus, polyphenols<br />
can be regarded as a kind of tyrosinase inhibitors.In<br />
addition to possessing good antioxidation and<br />
antityrosinase activity, polyphenols have some other<br />
functions. For example, the green and black tea<br />
polyphenols have the activity of anti-cervical cancer<br />
which is the second most common malignant neoplasm<br />
in women, in terms of both incidence and mortality rates<br />
worldwide (Singh et al., 2010). Red wine polyphenols<br />
cause growth inhibition and apoptosis in acute<br />
lymphoblastic leukaemia cells by inducing a redoxsensitive<br />
up-regulation of p73 and down-regulation of<br />
UHRF1 (Sharif et al., 2010).
16176 Afr. J. Biotechnol.<br />
Figure 1.Medicine mulberry.<br />
Mulberry medicine (Figure 1) is a half-domesticated<br />
plant. In plant taxonomy, it is black mulberry species<br />
(Morusnigra Linn). It was originated in Iran, and cultivated<br />
in Xinjiang Province in the 16th century. Mulberry<br />
medicine is the only black mulberry species which has 22<br />
haploid sets of chromosomes in a body cell. It is also a<br />
very precious officinal resource in nature. Mulberry<br />
medicine is a traditional Uyghur medicine in china and<br />
has the efficacy of anti-oxidation (Lqbal et al., 2010),<br />
delaying aging (Jiang, 2010), protecting liver and<br />
decreasing blood sugar level (Hemmati et al., 2010). The<br />
juice of mulberry medicine has a lot of active contents,<br />
including polyphenols, alkaloid, vitamin C, amino acids,<br />
polysaccharose etc(Ercisli et al., 2008, 2007, 2010;<br />
Koyuncu et al., 2004). These contents have the property<br />
of removing free radicals and are potent antioxidants.<br />
The objectives of this study were to determine the<br />
content of total polyphenols in mulberry medicine<br />
extraction, and investigate its inhibition effect on<br />
tyrosinase.<br />
MATERIALS AND METHODS<br />
Mature mulberry medicine (<strong>from</strong> The Germ Plasm Resource<br />
Garden of Institute of Sericulture of Xinjiang Province) was dried<br />
naturally and ground into powder.<br />
Ethanol, phosphoric acid, hydrogen peroxide, lithium sulfate,<br />
concentrated hydrochloric acid, natriumcarbonicumcalcinatum,<br />
sodium methoxide, gallic acid, sodium wolframate, sodium nitrite,<br />
aluminum nitrate, sodium hydroxide, rutin, monopotassium<br />
phosphate, potassium hydroxide and dopa (L-dopa) were of<br />
analytical pure grade and purchased <strong>from</strong> Taixin Reagent Company<br />
(Chongqing, China). Arbutin and mushrooms tyrosinase were of<br />
HPLC grade and obtained <strong>from</strong> Dingguo Reagent Company<br />
(Chongqing, China).<br />
Electronic balance was obtained <strong>from</strong> FA2004A, Shanghai<br />
Jingtian Electronics Co., Ltd; ultraviolet spectrophotometer, Xinshiji<br />
T6, Beijing Puxi General Co., Ltd; grinder, FFC-45D, LinyiDahua<br />
Machinery Works; ELIASA, BIO-RAD iMarkmicroplate Reader,<br />
Japan.<br />
Extraction of total polyphenols<br />
Twenty five grams of mulberry medicine powder was immersed in<br />
40 ml 70% ethanol solution for 4 h, and then filtered. The process<br />
was repeated twice and all of them were done under room<br />
temperature. The filtrate was added with 70% ethanol solution to<br />
100 ml.<br />
Determination of total polyphenols<br />
This was carried out according to the method of Bae and Suh<br />
(2007), with some modifications. In brief, 20 g of sodium wolframate<br />
and 5 g of sodium methoxide were placed in round bottomed flask<br />
and dissolved with 140 ml of distilled water.Then, 10 ml of 85%<br />
phosphoric acid and 20mL of concentrated hydrochloric acid were<br />
added and refluxed for 2 h at 100°C. We added 3 g lithium sulfate<br />
and 15 ml 30% hydrogen peroxide to the solution, and then boiled<br />
the solution until it became bright yellow(about 15 min). After that<br />
the solution was cooled and fixed to a constant volume of 250 ml,<br />
stored in a brown bottle and kept in dark place.<br />
Establishment of standard curve<br />
0.50 g of gallic acid standard sample was accurately weighed,
Determination of total polyphenols in sample<br />
0.01 ml of solution mentioned above was put in 10 ml centrifuge<br />
tube, added with 1 ml forint reagent, 3 ml 200 g/L sodium carbonate<br />
solution and 0.99 ml distilled water. After shaking up, it was placed<br />
under room temperature for 2 h. 70% ethanol was used as a blank.<br />
Absorbance was measured at 765 nm.<br />
Determination of antityrosinase activity<br />
The antityrosinase activity was investigated by the method of<br />
Shin(Shin et al., 1998), with some modifications. In brief, 50 μl of L-<br />
DOPA solution (3 mg/ml, dissolved in 0.1 mol/L phosphate buffer,<br />
pH 6.8) and 50μl of medicine mulberry medicine extract (dissolved<br />
in 70% ethanol) were placed in a 96-well microtiter plate, and then<br />
added to 50 μl of tyrosinase solution (100 u/ml, dissolved in<br />
0.1mol/L phosphate buffer, pH 6.8).The volume was adjusted to<br />
250 μl by adding 100μl PBS buffer solution (0.1 mol/L, pH 6.8). The<br />
solution was incubated at 37°C for 15 min and its absorbance was<br />
measured at 490 nm. PBS buffer solution was used as a blank.<br />
Percent of tyrosinase inhibitory activity was calculated <strong>using</strong> the<br />
following formula:<br />
I=[(A - B) - (C - D)]/(A - B) × 100%<br />
Where, A is the absorbance of the mixed solution without sample,<br />
50 μl 0.3% L-DOPA + 50 μl 70% alcohol + 100 μl PBS (pH 6.8) +<br />
50μl enzyme solution; B is the absorbance of the mixed solution<br />
without enzyme, 50 μl 0.3% L-DOPA + 50 μl 70% alcohol + 150 μl<br />
PBS (pH 6.8); C is the absorbance of the mixed solution with the<br />
sample, 50 μl 0.3% L-DOPA + 50 μl sample + 50 μl PBS (pH 6.8) +<br />
50 μl enzyme solution; D is the absorbance of the mixed solution<br />
without enzyme, 50μl 0.3% L-DOPA + 50 μl sample + 150 μl PBS<br />
(pH6.8). Half effective concentration (IC50) was obtained by <strong>using</strong><br />
the logarithm concentration-enzyme inhibition ratio regression<br />
equation.<br />
Mechanism of antityrosinase activity<br />
The mechanism of antityrosinase activity was analysed according to<br />
the method of Zhang and Chen (Zhang et al., 2006; Chen et al.,<br />
2002), with some modifications. In brief, L-DOPA (50 μl, 3 mg/ml,<br />
dissolved in 0.1 mol/L phosphate buffer, pH 6.8) was mixed with<br />
differentvolumes (10, 30, 50 and 70 μl) of tyrosinase solution (100<br />
u/ml, dissolved in 0.1 mol/L phosphate buffer, pH 6.8) in a 96-well<br />
microtiter plate, and then the differentvolumes (10, 30 and 50 μl) of<br />
extract were added. The volume was adjusted to 250 μl by adding<br />
PBS buffer solution. After that the solution was incubated at 37°C<br />
for 15 min and its absorbance was measured at 490nm by ELIASA.<br />
PBS buffer solution was used as a blank.<br />
Determination of inhibitory pattern<br />
The inhibitory pattern of anti-tyrosinase was determined according<br />
to the method of Zhang and Chen (Zhang et al., 2006; Chen et al.,<br />
2002), with some modifications. In brief, tyrosinase solution (50μL,<br />
100u/mL dissolved in 0.1mol/L phosphate buffer, pH 6.8) was<br />
mixed with differentvolumes (10 μl, 30, 50 and 70 μl) of L-DOPA (50<br />
μl, 3 mg/μl, dissolved in 0.1mol/L phosphate buffer, pH 6.8) in a 96well<br />
microtiter plate, and then the differentvolumes (10, 30 and 50<br />
μl) of extract were added. The volume was adjusted to 250 μl by<br />
adding PBS buffer solution. After that the solution was incubated at<br />
37°Cfor 15 min and its absorbance was measured at 490nm by<br />
ELIASA. PBS buffer solution was used as a blank. Samples<br />
inhibition type was determined by graphs constructed, <strong>using</strong> Line<br />
weaver-Burk double reciprocal.<br />
RESULTS<br />
Determination of total polyphenol content<br />
Chun et al. 16177<br />
The concentration of gallic acid standard solution had a<br />
linear relation with its absorbance within concentration<br />
range of 0.005 to 0.1 mg/ml. The corresponding equation<br />
of linear regression was y = 0.0486x - 0.0015 R² =<br />
0.9994. Total polyphenol content was calculated according<br />
to standard curve and the result is shown in Table 1.<br />
As illustrated in Table 1, the content of total polyphenolsin<br />
mulberry medicine wasup to 8.668mg/g.<br />
Multipledetermination coefficient of variation was 0.022,<br />
which indicated the result was reliable.<br />
Determination of anti-tyrosinase activity<br />
Using effector concentration as abscissa, inhibition ratio<br />
as ordinate, we constructed fitted curve by Origin8<br />
analysis software, and showed the result in Figure 2. As<br />
illustrated in Figure 2, relative inhibition ratio increased<br />
dramatically with the increase of extract concentration in<br />
low concentration range (0 to 0.02 mg/ml). In high<br />
concentration range (>0.02 mg/ml), the inhibition ratio<br />
increased much slower. Half inhibition concentration of<br />
extract on tyrosine (IC50) was approximately 12.12 mg/ml.<br />
Mechanism of anti-tyrosinase activity<br />
Different concentrations of mulberry medicine extract<br />
were added to enzyme activity determination system. A<br />
group of straight lines coming across the coordinate<br />
origin were obtained in the enzyme activity of the enzyme<br />
concentration plot (Figure 3). Withthe increase of extract<br />
concentration, the slope of the straight line became lower<br />
and lower, which meant the inhibition of mulberry<br />
medicine extract on tyrosinase was reversible inhibition.<br />
Its inhibition on tyrosinase was not achieved by reducing<br />
the enzyme’s catalysis ability but by reducing the amount<br />
of enzyme.<br />
Determination of inhibitory pattern<br />
The concentration of tyrosinase was fixed in the activity<br />
measurement system, and then concentration gradient of<br />
L-DOPA was set. We investigated the impact of different<br />
concentrations of mulberry medicine extract on<br />
tyrosinase activity, and constructed a group of hyperbolic<br />
curves by <strong>using</strong> the initial enzyme reaction rate on<br />
substrate concentration plot (Figure 4). As shown in<br />
Figure 4, the enzymatic reaction follows Michaelis’<br />
(Michaelis-Menten) kinetic equation. To study the
16178 Afr. J. Biotechnol.<br />
Table 1.The content of polyphenols in mulberry fruit.<br />
Parameter<br />
Parallel experiment Average<br />
1 2 3 4 5 value<br />
Standard<br />
deviation<br />
Coefficient of<br />
differentiation<br />
Content (mg/g) 8.664 8.949 8.723 8.424 8.580 8.668 0.193 2.2%<br />
Inhibition ratio (%)<br />
Enzyme act i vi t y ( OD/ mi n)<br />
100<br />
90<br />
80<br />
70<br />
60<br />
50<br />
40<br />
30<br />
20<br />
10<br />
0<br />
-10<br />
-0.005 0.000 0.005 0.010 0.015 0.020 0.025 0.030 0.035 0.040 0.045<br />
C (g/ml)<br />
Inhibition ratio (%)<br />
CubicFit of Inhibition ratio<br />
Figure 2.Effect of water extract <strong>from</strong> medicine mulberry on the activity of tyrosinase.<br />
1. 2<br />
1<br />
0. 8<br />
0. 6<br />
0. 4<br />
0. 2<br />
0<br />
[ I ] =8. 929mg/ mL<br />
[ I ] =26. 786mg/ mL<br />
[ I ] =44. 643mg/ mL<br />
0 20 40 60 80<br />
Enzyme concent r at i on ( u/ mL)<br />
Figure 3.Inhibitory mechanism of ethanolic extract <strong>from</strong> medicine mulberry on tyrosinase.<br />
[I] Denotes the concentration of inhibitor (the ethanolic extract <strong>from</strong> medicine mulberry).
Enzyme act i vi t y( OD/ mi n)<br />
Reci pr ocal of enzyme<br />
act i vi t y( 1/ ( OD/ mi n) )<br />
0. 25<br />
0. 2<br />
0. 15<br />
0. 1<br />
0. 05<br />
0<br />
0 2 4 6<br />
Subst r at e concent r at i on( c)<br />
Figure 4.The relationship between enzyme activity and substrate concentration. [I] Denotes the<br />
concentration of inhibitor (the ethanolic extract <strong>from</strong> Morusnigra L).<br />
12<br />
10<br />
0<br />
-2 -1 0 1 2<br />
Reci pr ocal of subst r at e concent r at i on( 1/ c)<br />
Figure 5. Lineweaver-Burk plots for inhibition of the ethanol extract of medicine mulberry on<br />
tyrosinase.[I]denotes the concentration of inhibitor (the ethanolic extract <strong>from</strong> medicine<br />
mulberry).<br />
inhibition type, Lineweaver-Burk double-reciprocal plots<br />
was used. The results are shown in Figure 5. The doublereciprocal<br />
plots yield a family line with different slopes<br />
and different intercepts, and they intersect one another in<br />
the second quadrant. This behavior indicatesthat<br />
mulberry medicine extract can bind, not only with free<br />
enzyme, but also with the enzyme-substrate complex,<br />
which shows its inhibition mechanism was mixed type.<br />
8<br />
6<br />
4<br />
2<br />
DISCUSSION<br />
[ I ] =8. 929mg/ mL<br />
[ I ] =26. 786mg/ mL<br />
[ I ] =44. 643mg/ mL<br />
[ I ] =8. 929mg/ mL<br />
[ I ] =26. 786mg/ mL<br />
[ I ] =44. 643mg/ mL<br />
Chun et al. 16179<br />
In this study, we found that the total polyphenols content<br />
in the dried sample of mulberry medicine was 8.668<br />
mg/g. It is a little lower than black mulberry fruits grown in<br />
East Anatolia Region of Turkey, in which the total<br />
phenolic content was 1422 mg gallic acid<br />
equivalents/100g fresh matter (Ercisli et al., 2007).
16180 Afr. J. Biotechnol.<br />
Polyphenols are potent antioxidants and can clear away<br />
free radicals effectively (Isabelle et al., 2008; Segev et<br />
al., 2010). The content of polyphenols in the ethanolwater<br />
extract of mulberry medicine is up to 8.668mg/g.<br />
Therefore, it explains why mulberry medicine has been<br />
used as a traditional medicine for so long.<br />
The ethanol extract of mulberry medicine was an<br />
efficient inhibitor of tyrosinase, its IC50 was 12.12 mg/ml,<br />
and its inhibition type was mixed type inhibition. Walker<br />
and Wilson (1975) suggested the existence of two distinct<br />
sites on the enzyme: one site for the binding of the<br />
substrate and another site, adjacent, for binding the<br />
inhibitor. Some inhibitors can bind not only with the free<br />
enzyme but also with the enzyme-substrate complex. So<br />
mixed type inhibition of the ethanol extract of mulberry<br />
medicine may be due to various substances it contains.<br />
The antityrosinase activityof mulberry medicine indicates<br />
that it can be used in cosmetics, treatment of skin<br />
disease and retain freshness of fruits and vegetables etc.<br />
It will also provide us with insight into finding new,<br />
efficient and safe tyrosinase inhibitors. This study is the<br />
first report on total polyphenols content and<br />
antityrosinase activity of mulberry medicine. Further<br />
investigation is required to purify phenolic compounds<br />
<strong>from</strong> mulberry medicine which have antityrosinase<br />
activity.<br />
ACKNOWLEDGEMENTS<br />
This work was supported by the Doctor Fund Project of<br />
Ministry of Education of China (Grant no.<br />
20090182120018) and Special Fund of Modern<br />
Agriculture Construction of China (Grant no. nycytx-27gw504).<br />
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African Journal of Biotechnology Vol. 10 (72), pp. 16181-16188, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB09.807<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Somatic embryogenesis and bulblet regeneration in<br />
snakehead fritillary (Fritillaria meleagris L.)<br />
Petrić Marija, Subotić Angelina*, Jevremović Slađana and Trifunović Milana<br />
Department of Plant Physiology, Institute for Biological Research, “Siniša Stanković”, University of Belgrade, Bulevar<br />
despota Stefana 142, 11060 Belgrade, Serbia.<br />
Accepted 27 December, 2010<br />
Induction of in vitro morphogenesis of mature zygotic embryos of Fritillaria meleagris L. was<br />
investigated. Somatic embryogenesis and whole plant regeneration were achieved. Isolated zygotic<br />
embryos were cultured on MS medium that contained 3% sucrose, 0.7% agar, 250.0 mg/l casein<br />
hydrolysate, 250.0 mg/l L-proline, 80 mg/l adenine sulfate and 1.0 mg/l 2,4-dichlorophenoxyacetic acid<br />
(2,4-D) or thidiazuron (TDZ). Embryogenic callus was derived <strong>from</strong> mature zygotic embryos after 4<br />
weeks on TDZ containing medium. Somatic embryos at the early stages of development arose <strong>from</strong> the<br />
surface of the embryogenic callus. Multiplication of somatic embryos, formation of bulblets and shoot<br />
development were observed on the same medium. Scale sections prepared <strong>from</strong> the formed bulblets<br />
were cultured on MS media supplemented with 2,4-D (0.1 to 10.0 mg/l) and TDZ (0.05 to 2.0 mg/l).<br />
Somatic embryos and bulblets were frequently produced <strong>from</strong> the scale sections. This is a successful<br />
report of plant regeneration through somatic embryogenesis for this very important medicinal and<br />
horticultural plant. Histological observation revealed that plants of F. meleagris L. were regenerated via<br />
somatic embryogenesis.<br />
Key words: Bulbous plant, medicinal plant, snakehead fritillary, somatic embryos.<br />
INTRODUCTION<br />
Fritillaria species used as garden plants is well established<br />
and more recently it has become popular as cut<br />
flower for interior decorations and other floral arrangement.<br />
Fritillaria meleagris L., with the common name<br />
snakehead fritillary, is a well known horticultural plant<br />
belonging to the Lilliaceae family. Also, the bulbs of<br />
various species of the genus Fritillaria have been used as<br />
anti-tissuve and expectorant herbs used in traditional<br />
Chinese medicine for more than 2000 years (Li et al.,<br />
2000, 2001). Propagation of this plant through conventional<br />
methods via bulbs cuttings is limited due to a low<br />
survival rate. Bulb development is very slow (general 4<br />
years of growth <strong>from</strong> initial seedling to maturity). Therefore,<br />
there is an urgent need to look for alternative means<br />
of propagation, which could ensure large-scale production<br />
of plants to fulfill the growing demands. In vitro propa-<br />
*Corresponding author. E-mail: subotic.angelina@gmail.com.<br />
Tel: + 381 11 20 78 425. Fax: + 381 11 27 61 433.<br />
gation is a feasible alternative for the rapid multiplication<br />
and maintenance of germplasm. In vitro propagation<br />
ensures the production of true-to-type plants in limited<br />
time and space. The propagation <strong>from</strong> elite mature plants<br />
is preferred for this purpose as they are selected on past<br />
performances. Tissue culture studies in Fritillaria were<br />
initiated as early a 1977 (Sun et al., 1977). Since then, an<br />
increasing number of reports about in vitro regeneration<br />
protocols applied to the genus have been published for a<br />
number of Fritillaria species (Sun and Wang, 1991;<br />
Kukulezanka et al., 1989; Gao et al., 1999; Paek, 1994;<br />
1996; Paek and Murthy, 2002; Özcan et al., 2007).<br />
Somatic embryogenesis is a multistep regeneration pathway<br />
starting with formation proembryogenic cell masses,<br />
followed by somatic embryo formation, germination and<br />
plant regeneration (Komamine et al., 2005). There are<br />
two paths of somatic embryogenesis; direct and indirect,<br />
and both can be undergone by many species (Quiroz-<br />
Figueroa et al., 2006). The use of plant growth regulators<br />
is useful in most species. 2,4-dichlorophenoxyacetic acid<br />
(2,4-D) such as auxin and thidiazuron (TDZ) such as
16182 Afr. J. Biotechnol.<br />
cytokinin are especially significant in promoting somatic<br />
embryogenesis (Jiménez, 2005). Sometimes somatic<br />
embryos are recognized only by their external shape and<br />
morphology, although histological study is necessary to<br />
confirm the identification of different developmental<br />
phases (Yeung, 1999). Somatic embryogenesis has<br />
already been used as a method for conserving and safeguarding<br />
overexploited and endangered plant species<br />
(Nadeem, 2000). Making use of in vitro culture can provide<br />
enough plant material to reinforce wild populations when<br />
appropriate. The choice of explants for establishment of<br />
in vitro culture is largely dictated by the method to be<br />
adopted for in vitro propagation. The ability of mature<br />
zygotic embryos to produce somatic embryos on induction<br />
medium clearly indicates that zygotic embryos are<br />
suitable materials for in vitro regeneration of Fritillaria<br />
species. Previous literature showed in vitro plant regeneration<br />
<strong>from</strong> bulb scales of Fritillaria species. The results<br />
<strong>from</strong> this study can be compared with commonly used<br />
bulbs as explants for in vitro regeneration. This is important<br />
for several reasons: bulbs are usually contaminated<br />
by pathogens; they have limited number scales and the<br />
use of bulbs could result in the destruction of Fritillaria<br />
natural populations (Witomska and Lukazewska, 1997).<br />
Induction of somatic embryogenesis in F. meleagris L.<br />
has not yet been reported. The first report of the induction<br />
of somatic embryogenesis in the genus was for F.<br />
imperialis (Mohammadani-Dehcheshmeh et al., 2007).<br />
The authors reported the induction of indirect somatic<br />
embryogenesis <strong>from</strong> the petal explants.<br />
In this study, the induction of somatic embryogenesis<br />
and plant regeneration in callus cultures derived <strong>from</strong><br />
mature zygotic embryos of F. meleagris L was investigated.<br />
Also, the effect of growth regulators and light condition<br />
on somatic embryos and bulblets formation <strong>from</strong><br />
bulb scales was investigated. Up till now, no precise histological<br />
analysis of the different stages of development<br />
has been performed during the in vitro morphogenesis of<br />
F. meleagris L. A histological view of the developmental<br />
stages of somatic embryogenesis of F. meleagris L is<br />
presented in this study.<br />
MATERIALS AND METHODS<br />
Embryogenic callus induction <strong>from</strong> mature zygotic embryos<br />
Seeds of F. meleagris L. were washed with running water for 1 h<br />
and then surface sterilized in 20% bleach solution (sodium<br />
hypochlorite) for 20 min. After sterilization, seeds were washed with<br />
sterile deionised water 3 times for 5 min. Mature embryos were<br />
isolated aseptically and were used as explants for embryogenic<br />
callus induction. All media were adjusted to pH 5.8 with 1 N NaOH<br />
and autoclaved at 121°C with 1.4 kg/cm 2 for 25 min. All cultures<br />
were maintained at 24 ± 2°C under fluorescent light of 40 μmol m -<br />
2 s -1 16 h light / 8 h dark photoperiod. The basal medium (BM) consisted<br />
of MS medium (Murashige and Skoog, 1962), 30 g/l sucrose,<br />
250 mg/l casein hydrolysate, 250 mg/l L-proline, 80 mg/l adenine<br />
sulfate and was solidified with 7 g/l agar. Isolated mature zygotic<br />
embryos were cultured 4 weeks on three induction media:<br />
hormones free BM, BM with 2,4-D 1.0 mg/ l and BM with TDZ 1.0<br />
mg/l. Formed callus were cultivated on same media. Bulblet formation<br />
was observed on BM supplemented with TDZ 1.0 mg/l.<br />
Somatic embryos and bulblets formation <strong>from</strong> bulblet scale<br />
sections<br />
Bulbs formed on BM supplemented with TDZ 1.0 mg/l were cut on 4<br />
scale sections and cultured on BM that contained different<br />
concentrations of 2,4-D in mg/l (0.1, 0.5, 1.0, 2.0, 5.0 10.0) and<br />
TDZ (0.05, 0.1, 0.2, 0.5, 1.0 and 2.0). Hormone free medium (BM)<br />
was used as control. Cultures were incubated for 4 weeks on light<br />
and dark conditions at 24 ± 2°C. After 4 weeks on induction media,<br />
the number of somatic embryos was measured per the number of<br />
embyogenic callus. Each experiment consisted of 10 explants per<br />
culture vessel and three replicate vessels per treatment. The<br />
experiments were repeated at least three times. Statistical analysis<br />
was performed <strong>using</strong> StatGrafics software version 4.2 (STSC Inc.,<br />
Rockville, Marylend, USA). Data were subjected to analysis of<br />
variance (ANOVA) and comparisons between the mean values of<br />
treatments were made by the least significant difference (LSD) test<br />
calculated at the confidence level of P≤ 0.05. For bulblet formation,<br />
4 weeks after initiation of culture, percentage of bulblet formation<br />
was measured by dividing the number of explants producing<br />
bulblets per number of cultured explants.<br />
Rooting and acclimation<br />
Regenerated bulbs were cultured on BM without growth regulators<br />
for 9 weeks at 4°C. The cultures were incubated for the same time<br />
on light conditions at 24 ± 2°C and were used as control. Rooted<br />
bulbs were transferred into soil, covered with glasses and moved to<br />
the greenhouse. This experiment involved 80 to 100 bulbs with<br />
three replications. After 2 weeks in the growth chamber, the<br />
regenerants were gradually exposed to reduced relative humidity by<br />
progressively removing the glass cover over a period of three<br />
weeks. Plantlets survived the acclimatization and grew slow and<br />
well.<br />
Histological study<br />
Ontogeny of somatic embryo development <strong>from</strong> mature zygotic<br />
embryos was studied histologycally. Embryogenic callus and<br />
somatic embryos were fixed in a solution of formalin, alcohol and<br />
acetic acid (FAA), 100 ml of which contains 5.4 ml formalin (37 %),<br />
65.5 ml ethanol (96%), 5 ml glacial acetic acid and 24 ml distilled<br />
water (Jensen, 1962). Parts of the explants with different developmental<br />
structures were cut and embedded in Histowax (Sweden).<br />
At the beginning of this process, the samples were dehydrated in 2h<br />
steps through a graded series of ethanol (50, 70, 96 and 100%).<br />
The samples were then embedded in Histowax (Histolab, Sweden)<br />
for 72 h at 58°C. Slices (5 μm) were cut at room temperature <strong>using</strong><br />
rotary microtome (Reichert-Vienna) equipped with type 819<br />
microtome blades (Leica, Germany). Slices were stretched on a<br />
drop of distilled water and mounted on slides. They were stained<br />
with haematoxyline (Jensen 1962). Sections were mounted in DPX<br />
before microscopic examination (Leica, Leitz DMRB, Germany).<br />
RESULTS<br />
Embryogenic callus induction <strong>from</strong> mature zygotic<br />
embryos<br />
The BM containing 1 mgl -1 TDZ and hormone free medium
were the most efficient for inducing yellow-white and<br />
compact embryogenic callus (Figure 1 a). Embryogenic<br />
callus produced embryos on the induction medium itself<br />
(Figure 1 b). Embryogenic callus with embryos were used<br />
for further maturation experiments. Multiplication of<br />
somatic embryos and bulblet formation of F. meleagris L.<br />
were also achieved on BM containing TDZ 1 mgl -1 (Figure<br />
1c and d). In the investigation, 2,4-D had no effects on<br />
embryogenic callus formation as well as somatic embryo<br />
and bulbs development (data not shown).<br />
Somatic embryos and bulblets formation <strong>from</strong> bulblet<br />
sections<br />
In this work, regeneration <strong>from</strong> in vitro bulblet sections of<br />
F. meleagris L was also investigated. Formation of<br />
somatic embryos and bulblets <strong>from</strong> sections was<br />
analyzed under continuous dark and under 16 h light / 8 h<br />
dark cycle at 24 ± 2°C. In the case of F. meleagris L.,<br />
bulblet sections responded well to 16 h light / 8 h dark<br />
growth conditions when compared to continuous dark<br />
regime and also produced more somatic embryos bulblets.<br />
The BM medium without growth regulators induced<br />
a few somatic embryos and about two bulblets per<br />
explant. The number of developed somatic embryos was<br />
higher in cultures grown on BM supplemented with TDZ<br />
(Table 1, Figure 1 e, f and g) than on BM with 2,4-D on<br />
both treatments (light/dark). The highest number of<br />
somatic embryos was noticed on BM supplemented with<br />
TDZ (0.2 mgl -1 ) under light condition and with TDZ (0.1<br />
mgl -1 ) under dark condition. The number of somatic<br />
embryos was concentration dependent and increased<br />
until the concentration of TDZ was 0.2 and 0.1 mgl -1<br />
under light/dark, respectively. The number of formed<br />
somatic embryos constantly decreased on higher concentrations<br />
of TDZ. The highest number of somatic<br />
embryos on BM with 2,4-D was observed in 1 mg l -1<br />
under light and dark conditions (Table 2). The number of<br />
somatic embryos was also concentration dependent and<br />
decreased on higher concentrations of 2,4-D. Generally,<br />
the number of formed bulblets was significantly smaller<br />
than the number of formed somatic embryos on the same<br />
media. The BM supplemented with TDZ was superior in<br />
the induction of bulblets under light (14.93%) and dark<br />
(3.6%) conditions. The maximum number (2.76) of bulblets<br />
was observed on BM supplemented with TDZ (0.05<br />
mgl -1 ) under light condition and maximum number (2.1) of<br />
bulblets under darkness condition was observed on BM<br />
with TDZ (0.5 mgl -1 ). The number of bulblets formed on<br />
BM supplemented with 2,4-D was small under light<br />
condition (4.12%) as under darkness condition (2.32%).<br />
Acclimation<br />
The results indicated that cold treatment was suitable for<br />
Marija et al. 16183<br />
overcoming the dormancy and rooting of the harvested<br />
bulblets and with this treatment, 60.45% of bulblets<br />
sprouted in ex vitro transplantation. The average number<br />
of roots per bulb was 2 and the average length of root<br />
was 8.49 mm (Figures 1h and i). Rooted plantlets <strong>from</strong><br />
each treatment were acclimatized in greenhouse conditions<br />
(Figure 1j).<br />
Histological analysis of somatic embryos<br />
development<br />
After three weeks of somatic embryogenesis induction on<br />
BM medium with TDZ 1 mg/l, a proliferate burst in the<br />
epidermal and subepidermal layers and the beginning of<br />
cellular segregation was seen (Figure 2a). The intensive<br />
periclinal division of these cells led to the formation of<br />
distinct cell groups which could be interpreted as early<br />
stages in embryogenesis. These were present in groups<br />
of 6 to 8 isodiametric meristematic cells with prominent<br />
nuclei and dense cytoplasm (Figure 2b). Cell divisions<br />
then progressively became asynchronous and lost<br />
periclinal orientation, thus produced compact, smoothsurfaced<br />
and meristematic masses clearly delimited by a<br />
protoderm (Figure 2c). Such nodular structures were also<br />
formed deeply within the bulb or primary explant (Figure<br />
2d). Further development of these proembryo structures<br />
led to the formation of globular somatic embryo at the<br />
surface of explant as shown in Figure 2e. All<br />
developmental stages on the explant in the same time<br />
indicated asynchronous development of somatic embryos.<br />
Well-organized globular shaped structures developed<br />
further through the characteristic heart-shaped stage to<br />
form a cotyledonary stage embryo (Figures 2f and g).<br />
The embryo had a shoot primordial enclosed within a pair<br />
of cotyledons and a distinct root primordium (Figure 2g).<br />
Moreover, this advanced stage or developed somatic<br />
embryos showed a contained provascular strand. The<br />
developing somatic embryos had no detectable vascular<br />
connection with primary explants. The cotyledonary node<br />
region programmed for shoot organogenesis showed<br />
development of a shoot primordium with a well-defined<br />
dome shaped apical meristem (Figure 2h).<br />
DISCUSSION<br />
The bulbous plants reproduced vegetatively and the<br />
process of multiplication was very low. Beside the<br />
advantages of efficient propagation, somatic embryogenesis<br />
has several basic applications to biotechnology<br />
of this plant including F. meleagris L. In this study,<br />
morphogenic responses obtained <strong>from</strong> mature zygotic<br />
embryos and bulblet scale explants of F.meleagris L. of<br />
known ornamental and medicinal value are of interest<br />
considering the potential of tissue culture for the<br />
improvement of plant conservation methods. Somatic
16184 Afr. J. Biotechnol.<br />
Figure 1. Differentiation of somatic embryos and bulblets of F.meleagris L. (A) Embryogenic callus<br />
induced on the BM containing 1.0 mgl -1 TDZ <strong>from</strong> mature zygotic embryos (bar = 0.5 mm); B, formation of<br />
somatic embryos on embryogenic callus (bar = 0.5 mm); C and D, somatic embryos and bulblets<br />
multiplication on medium with 1.0 TDZ mgl -1 (bar = 0.8 mm); E, Somatic embryos on bulb section on BM<br />
with: 0.1 mgl -1 TDZ under light condition (bar = 0.5 mm); F; with 0.1 mg l -1 TDZ under dark condition (bar<br />
= 0.5 mm); G, bulblets on bulb section on BM with 0.5 mgl -1 TDZ under dark condition (bar = 0.5 mm); H<br />
rooted bulb after 9 weeks cold treatment (bar = 1 cm); I, rooted plant on BM medium without hormone (bar<br />
= 1 cm); J, potted in vitro plantlets in greenhouse condition (bar = 1 cm); EC, embryogenic callus; SE,<br />
somatic embryo; B, bulblet.
Marija et al. 16185<br />
Table 1. The effect of different concentrations of 2,4-D (mg l -1 )on somatic embryos induction for in vitro bulblet sections of F.<br />
meleagris L.<br />
Growth<br />
condition<br />
Concentration of 2,4-D (mg l -1 )<br />
0 0.1 0.5 1.0 2.0 5.0 10.0<br />
Light 4.95±0.65 a 5.07±0.53 bc 4.66±0.43 bc 5.36±0.66 c 3.77±0.37 ab 2.46±0.25 a 2.38±0.28 a<br />
Darkness 4.62±0.59 a 3.95±0.39 b 3.8±0.31 b 4.21±0.44 b 2.77±0.22 a 3.54±0.27 ab 3.32±0.37 ab<br />
Values shown are means of 3 replicates of 32 explants each. Values represent mean SE. Means followed by the same letters within<br />
columns are not significantly different according to LSD test at p ≤ 0.05 probability level.<br />
Table 2. The effect of different concentration of TDZ (mg l -1 ) on somatic embryos induction for in vitro bulblet sections of F. meleagris<br />
L.<br />
Growth<br />
condition<br />
Concentration of TDZ (mg l -1 )<br />
0 0.05 0.1 0.2 0.5 1.0 2.0<br />
Light 4.95±0.65 a 5.96±0.64 b 6.07±0.62 b 7.31±0.95 b 6.33±0.73 b 4.11±0.36 a 4.01±0.35 a<br />
Darkness 4.62±0.59 a 3.0±0.31 a 6.55±0.78 c 6.11±0.57 c 5.44±0.57 bc 4.22±0.37 ab 3.20±0.31 a<br />
Values shown are means of 3 replicates of 32 explants each. Values represent mean SE. Means followed by the same letters within columns<br />
are not significantly different according to LSD test at p ≤ 0.05 probability level.<br />
embryogenesis represents a simple and very efficient<br />
alternative means of regenerating large number of<br />
monocotyledonous geophytes such as saffron (Ahuja et<br />
al., 1994), Narcissus (Sage et al., 2000) and Lilium (Kim<br />
et al., 2003).<br />
Explant source is one of the most important factors in<br />
the induction of morphogenetic response of in vitro cultures,<br />
especially in monocots where cells diffentiate early<br />
and quickly and so lose their morphogenetic potential<br />
(Krishnaraj and Vasil, 1995). Only parts of the plant that<br />
are close to meristematic tissue in vivo can respond to in<br />
vitro treatments. Zygotic embryos are frequently used as<br />
explants for initiating embryogenic culture and physiological<br />
conditions of the explants play an important role in<br />
the induction process. These highly regenerative organs<br />
can be an alternative source for in vitro propagation of<br />
rare species such as F. meleagris L. The type and<br />
concentration of plant growth regulators in the culture<br />
medium play an important role in induction and development<br />
of somatic embryos. The induction of somatic<br />
embryogenesis <strong>using</strong> only 2,4-D as a growth regulator<br />
has been observed in many monocotyledons species<br />
such as Allium aflatunense (Subotić et al., 2006), Allium<br />
sativum (Luciani et al., 2006) and rice (Meneses et al.,<br />
2005). Cytokinins are known to enhance plant differentiation<br />
and are mostly used in the regeneration medium in<br />
plant tissue culture. Thidiazuron is able to induce diverse<br />
morphogenic responses, ranging <strong>from</strong> tissue proliferation<br />
to adventitious shoot and somatic embryo formation. Of<br />
all the plant growth regulators used, embryo axes of<br />
Allium magnum cultured on the media that contained only<br />
TDZ (1.0 to 2.0 mgl -1 ) and IAA (0.25 to 2.0 mg l -1 )<br />
produced green-yellowish and friable embryogenic calli<br />
(Xie and Hong, 2001). Apart <strong>from</strong> its cytokinin-like<br />
activity, TDZ has been suggested to be a modulator of<br />
the endogenous auxin level. Of interest in this contest is<br />
the modulation of endogenous auxin by TDZ (Hutchinson<br />
et al., 1996), since the induction of somatic embryogenesis<br />
is commonly associated with auxins (Visser et<br />
al., 1992). Previous in vitro culture studies of Fritillaria<br />
thunbergii showed that addition of growth regulators to<br />
the medium enhanced the effect on bulblet regeneration<br />
(Sun et al., 1977; Seon et al., 1999). In F. melegris L.,<br />
typically bulbous plant somatic embryos led to formation<br />
of bulblets. Similar morphogenic pathways <strong>using</strong> petal<br />
explants was reported previously for F. imperialis<br />
(Mohammadi-Dehceshmen et al., 2007).<br />
Bulblet scale explants are the most commonly used<br />
primary explants for in vitro propagation of Fritillaria<br />
species (Peak, 1996; Witomska, 2000). The results of<br />
usage of different concentrations of 2,4-D and TDZ in<br />
culture of bulblet scales of F. meleagris, did not only<br />
induce somatic embryogenesis, but also stimulated the<br />
formation of bulblet. Bulblets formation differed among<br />
the hormone concentrations in BM medium. The results<br />
indicated that a range of 0.05 to 0.5 mg l -1 TDZ was an<br />
optimal concentration for bulblets formation of F. melegris<br />
L. This was low when compared with the efficiencies<br />
reported for production of bulblets in culture of bulblets<br />
scale of F. thunbergii (Peak and Murthy, 2002). These<br />
authors established high frequency bulblets regeneration<br />
<strong>using</strong> various concentrations of cytokinis and NAA. To<br />
improve on the present results, many combinations of<br />
2,4-D and TDZ in BM medium will be tested.<br />
Light suppresses bulblet formation (Stimart and Ascher,<br />
1978) and the dark was more favorable for bulblet<br />
regeneration in Lillium (Niimi and Onozawa, 1979). A<br />
similar effect of light/dark regimes was noticed during the
16186 Afr. J. Biotechnol.<br />
Figure 2. Histological observation of somatic embryogenesis <strong>from</strong> bulbs culture of F. meleagris L. (a) Cross-section of<br />
bulb showing small clumps of densely stained cells in subepidermal layer (bar = 60 μm); (b) Initial periclinal divisions in<br />
superficial layers of explant (bar = 30 μm); (c) Section showing extrusion through the epidermis of proliferating<br />
meristematic masses (bar = 60 μm); (d) Proembryogenic stages containing approximately 40 cells (bar = 120 μm); (e)<br />
Somatic embryos at the globular stages (bar = 240 μm); (f) Heart-shaped embryo with procambial strands (bar = 240<br />
μm); (g) Cotiledonary embryo with a cotyledons, procambial strands and root meristem (bar = 240 μm); (h)<br />
Longitudinal section of somatic embryos with well developed apical meristem and leaf (bar = 120 μm); (i) Detail of<br />
apical meristem and well developed leaf (bar = 60 μm).<br />
growth of bulblet of Lillium longiflorum (Leshem et al.,<br />
1982). In Hyacintus, effect of light or darkness on bulblet<br />
regeneration <strong>from</strong> flower buds was cultivar dependent<br />
(Kim et al., 1981). Light accelerated bulblet formation on<br />
all types of Fritillaria imperialis explant used (Witomska<br />
and Lukaszewska, 1997). Tissue cultures of fritillaries<br />
also need low temperature; callus and bulblets are normally<br />
induced at standard growth room temperature but<br />
in order to develop further growth of in vitro formed<br />
bulblets, they need 2 to 15°C of cold treatment (Peak,<br />
1996). Cold treatment (4°C) had great positive effect on<br />
breaking the dormancy that resulted in the increase in<br />
rooting and sprouting of F. meleagris bulblets formed in<br />
vitro.<br />
Structural analysis is an important step in the study of<br />
in vitro somatic embryogenesis (Yeung, 1999). The histology<br />
observations suggest that the first stage of development<br />
of somatic embryos was characterized by breaking
up of the meristematic masses. Active cell division in the<br />
superficial layers led to the formation of clusters that were<br />
composed of small isodiametric cells followed by the<br />
formation of epidermis. The stages of differentiation<br />
during somatic embryogenesis in F. melegris L. reported<br />
in this work are in agreement with observation previously<br />
reported in several geophytes as in the case of<br />
Narcissus (Sage et al., 2000) and Allium sativum (Fereol<br />
et al., 2000).<br />
Conclusion<br />
In vitro culture techniques are an important aid for the<br />
multiplication of plant species, which have limitations of<br />
conventional propagation. In this study, a protocol for<br />
somatic embryogenesis and bulblets regeneration of F.<br />
meleagris L. is envisaged as a means for germplasm<br />
conservation to ensure the survival of this endangered<br />
plant. This is an important step in for further studies of<br />
efficient regeneration <strong>from</strong> other sources of explants as<br />
well as genetic transformation in F. meleagris L.<br />
ACKNOWLEDGEMENT<br />
This research was financially supported by Serbian<br />
Ministry of Science and Technological Development-<br />
Project (No ON173015).<br />
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Kukulezanka K, Kromor K, Czastka B (1989). Propagation of Fritillaria<br />
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Li SL, Li P, Lin G, Chan SW, Ho YP (2000). Simultaneous determination<br />
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Li SL, Lin G, Chan SW and Li P (2001). Determination of the major<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16189-16192, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1822<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Meiotic behavior and pollen fertility of five species in<br />
the genus Epimedium<br />
Yu Jiang, Chunbang Ding*, Haixia Yue and Ruiwu Yang<br />
College of Biology and Science, Sichuan Agricultural University, Yaan 625014, China.<br />
Accepted 9 September, 2011<br />
Meiotic behavior and pollen fertility were analysed in five Epimedium species: Epimedium chlorandrum,<br />
Epimedium acuminatum, Epimedium davidii, Epimedium ecalcaratum and Epimedium pubescens.<br />
Chromosome numbers for five species were 2n = 2x = 12. All examined species displayed stable meiotic<br />
process and high pollen fertility (>76.67%). Meiotic abnormality partially affected pollen fertility. At<br />
metaphase I, the predominant chromosome configuration was 6II, and occasionally, 5II + 2I. A low<br />
frequency of meiotic abnormalities was recorded in five species. Chromosome bridges, laggards and<br />
micronuclei were the main abnormalities observed in Epimedium. “Diagonal bridge” was first found in E.<br />
chlorandrum due to the altered spindle axis. Polyad was only presented in E. davidii and might have<br />
resulted <strong>from</strong> abnormal cytokinesis. Pollen fertility was correlated with meiotic abnormality.<br />
Keywords: Epimedium, meiosis, chromosomal abnormality, pollen fertility.<br />
INTRODUCTION<br />
The genus Epimedium, with more than 60 species, is<br />
common in the Mediterranean region and the western<br />
Asia (Stearn, 2002). China is the center of genus diversity,<br />
and has approximately 52 taxa of Epimedium (Ying, 2002;<br />
Guo et al., 2008). The major bioactive components in<br />
Epimedium are flavonoids and more than 60 flavonoids<br />
have been identified (Wu et al., 2008; Chen et al., 2008).<br />
It is effective in strengthening kidneys, enhancing sexual<br />
performance, treating cardiovascular diseases and<br />
improving immunity (Kovačević et al., 2006; Xu et al.,<br />
2007).<br />
Cytogenetics on the genus Epimedium has mainly been<br />
devoted to chromosome counts. The chromosome<br />
numbers have been determined for 18 species <strong>from</strong><br />
China and 11 species <strong>from</strong> Japan (Sheng et al., 2010;<br />
Kuroki, 1970, 1967). In Epimedium, most species are<br />
diploid with 2n = 2x = 12, except E. yingjiangense with 2n<br />
= 4x =24 (Sheng et al., 2010). Meiotic analyses in the<br />
genus Epimedium are few and only available in hybrid<br />
populations (Sheng et al., 2011). Pollen fertility was high<br />
in hybrids (>76.10%) and meiotic abnormalities occurred<br />
*Corresponding author. E-mail: dcb@sicau.edu.cn. Tel: +86 835<br />
288 6170. Fax: +86 835 288 6136.<br />
in a minority, including chromosome bridges in anaphase<br />
I/anaphase II, laggards in anaphase I, irregular<br />
chromosome segregation in anaphase I/anaphase II and<br />
micronuclei in telophase II/telophase II (Sheng et al.,<br />
2011). The regular meiosis ensures gamete viability and<br />
meiotic irregularities would generate sterile gamete and<br />
decrease the pollen viability (Pagliarini, 2000). Basic data<br />
on chromosome number, meiosis and pollen fertility<br />
estimations are important to study biodiversity, for<br />
germplasm characterization and for applications to plant<br />
breeding.<br />
This study presents the first reports on the meiotic<br />
behavior in pollen mother cells (PMCs) and pollen fertility<br />
of five species of Epimedium: Epimedium chlorandrum,<br />
Epimedium acuminatum, Epimedium davidii, Epimedium<br />
ecalcaratum and Epimedium pubescens.<br />
MATERIALS AND METHODS<br />
Five species examined in the present study are listed in Table 1.<br />
Voucher specimens have been preserved in the Herbarium of<br />
Sichuan Agricultural University (SAU). All plants were cultivated in<br />
the Botanical Experimental Area of the College of Biology and<br />
Science at SAU.<br />
Flower buds in the ideal stage for meiotic analysis were collected,<br />
fixed in acetic alcohol (1:3) for 24 h, transferred to 70% ethanol and
16190 Afr. J. Biotechnol.<br />
Table 1. Sample numbers, chromosome numbers, voucher and localities of Epimedium analysed.<br />
Species<br />
Number of plants<br />
observed<br />
Chromosome<br />
number (2n)<br />
Voucher Locality<br />
E. acuminatum 5 12 Yu E.M. 4106 Emei, Sichuan<br />
E. pubescens 5 12 Yu D.J. 2015 Dujiangyan, Sichuan<br />
E. chlorandrum 3 12 Yu Y.A. 1635 Baoxing, Yaan, Sichuan<br />
E. davidii<br />
E. ecalcaratum<br />
2<br />
1<br />
12<br />
12<br />
stored at 4°C. Slide preparations were made by the squash<br />
technique and stained with 1% propionic carmine. Almost 300 PMCs<br />
were analysed for each plant.<br />
Pollen grains were fixed in acetic alcohol (1:3) for 24 h at room<br />
temperature and stored in 70% alcohol at -18°C. Pollen fertility was<br />
estimated by examining the percentage of stained pollen grains with<br />
0.5% 2,3,5-triphenyltetrazolium chloride (TTC). At least, 300 pollen<br />
grains per plant were evaluated. Photomicrographs were taken with<br />
the Olympus microscope BX51.<br />
RESULTS<br />
A total of sixteen individuals belonging to five species of<br />
Epimedium were examined for meiotic behavior of PMCs.<br />
During the prophase I, the chromosomes condensed<br />
and then the homologous pairing was initiated. At<br />
diakinesis, 6 discrete bivalents linked by one or two<br />
chiasmata were visible. Rod and ring bivalents (Figure 1A<br />
and B) were dominant, while v-form bivalent (Figure 1B)<br />
was also observed. As meiosis proceeded into metaphase<br />
I, the highly condensed bivalents became aligned on the<br />
meiotic spindle and clustered in the equatorial plate of the<br />
cell. Frequent abnormality observed in metaphase I was<br />
precocious migrations or asynapsis with two univalents. In<br />
Epimedium, the predominant chromosome configuration<br />
was 6II and occasionally, 5II + 2I (Figure 1C). High<br />
irregularities were observed in anaphase I/telophase I.<br />
The percentage of bridge was the highest (26.67%) in E.<br />
chlorandrum (Figure 1D) and the lowest (3.33%) in E.<br />
ecalcaratum (Table 2). One or two laggard chromosomes<br />
(Figure 1E) were detected in E. chlorandrum, E.<br />
acuminatum and E. pubescens. Some micronuclei (Figure<br />
1F) were found in E. acuminatum and E. davidii at<br />
telophase I. The chromosomes despiralized, nucleoli and<br />
nuclear membranes reappeared and dyads were formed.<br />
In the second division, the chromosome recondesed at<br />
prophase II. Spindles at metaphase II mainly appeared<br />
paralleled (Figure 1G) and `T´ shaped (Figure 1H). At this<br />
point, cohesion at centromeres had broken down and<br />
sister chromatids separated at anaphase II. The chromo-<br />
some bridge was widely observed in anaphase II<br />
/telophase II. Unexpectedly, “diagonal bridge” was found<br />
in E. chlorandrum (Figure 1I). Cytokinesis generated<br />
Yu Y. A. 6101<br />
Yu Y.A.1401<br />
Baoxing, Yaan, Sichuan<br />
Baoxing, Yaan, Sichuan<br />
symmetric (Figure 1J) or tetrahedral (Figure 1K) tetrad<br />
containing haploid microspores. The minority of cells<br />
presented tetrahedral tetrad with micronuclei (Figure 1L).<br />
Polyad was observed frequently (16.00%) in E. davidii<br />
(Figure 1M).<br />
The pollen fertility in five species is listed in Table 2.<br />
Pollen fertility was about 80%; the highest was 90% in E.<br />
ecalcaratum and the lowest was 76.67% in E. davidii.<br />
DISCUSSION<br />
We have investigated the meiotic process of PMCs of five<br />
Epimedium species. Chromosome counts for 5 species<br />
indicate diploidy with 2n = 2x = 12, which is consistent<br />
with the previous reports (Sheng et al., 2010).<br />
The meiosis is basically normal with few abnormalities,<br />
involving univalents, chromosome bridges, unexpectedly<br />
“diagonal bridge”, laggards, micronuclei and polyploid.<br />
Univalents were observed at metaphase I in E.<br />
chlorandrum and E. davidii. Precocious migration of<br />
univalents may have resulted <strong>from</strong> precocious chiasma<br />
terminalization at diakinesis or metaphase I or <strong>from</strong><br />
synaptic mutants (Bione et al., 2000). These meiotic<br />
abnormalities may produce micronuclei in telophase I and<br />
meiosis II.<br />
The most frequent abnormalities were bridges and<br />
laggards at anaphase I / II (Figure 1D, E and I). The<br />
highest percentage of bridges and laggards was observed<br />
in E. chlorandrum (26.67 and 5.00%). When cell division<br />
occurs, a broken chromosome with two centromeres is<br />
pulled to the opposite poles of the cell, forming a long<br />
chromosome bridge called chromatid bridge (Zhang et al.,<br />
1997). Rothfels (1975) demonstrated that the bridge may<br />
originate <strong>from</strong> chiasma formation in heterozygous<br />
inversions. “Diagonal bridge” at anaphase II was caused<br />
by the altered spindle axis and reduced the pollen fertility<br />
(Zhang et al., 1997). The laggards observed in<br />
Epimedium may lead to micronucleus formation. The<br />
meiotic abnormalities found in interspecific hybrids and<br />
haploid plants accounted for low percentage of pollen<br />
fertility (Bione et al., 2000).<br />
Micronuclei and polyad with variable numbers of
Figure 1. (A) Diakinesis in E. chlorandrum, n = 6, with rod bivalent (black arrow)<br />
and ring bivalent (white arrow); (B) Diakinesis in E. ecalcaratum, n = 6, with<br />
v-form (white arrow) and ring bivalent (black arrow); (C) Metaphase I in E. davidii,<br />
with two univalents (arrow); (D) Anaphase I in E. chlorandrum, with bridge (arrow);<br />
(E) Anaphase I in E. chlorandrum, with laggards (arrow); (F) Telophase I in E. davidii,<br />
with micronulei (arrow); (G) Metaphase II in E. davidii, with micronuleus (arrow); (H)<br />
Metaphase II in E. chlorandrum, with spindles appearing in `T´ shape; (I) Metaphase<br />
II in E. chlorandrum, with “diagonal bridge” (arrow); (J) Symmetrical tetrad in E.<br />
pubescens; (K) Tetrahedral tetrad in E. acuminatum; (L) Tetrahedral tetrad with<br />
micronulei (arrow) in E. davidii; (M) Polyad in E. davidii. Scale bar = 5 μm.<br />
microspores were found in E. davidii (Figure 1F, G, L and<br />
M). The origin of polyad was diverse. In some species,<br />
micronuclei remained in the tetrad stage, affected the<br />
final product and formed ployads (Mendes-Bonato et al.,<br />
Jiang et al. 16191<br />
2001). Caetano-Pereira and Pagliarini (2001) reported<br />
that polyad were produced as a result of abnormal<br />
cytokinesis during meiosis, which generated sterile pollen<br />
grains. In E. davidii, the percentage of PMCs with polyad
16192 Afr. J. Biotechnol.<br />
Table 2. Frequency of abnormal PMCs and pollen fertility in Epimedium.<br />
Taxon<br />
Number of<br />
investigated<br />
PMCs<br />
Number of PMCs with meiotic abnormality (%)<br />
Bridges Laggards Micronuclei Polyads<br />
Total meiotic<br />
abnormality (%)<br />
Number of pollen<br />
grains analysed<br />
Pollen<br />
Number of pollen<br />
grains stained<br />
Pollen<br />
fertility (%)<br />
E. acuminatum 300 6.67 2.00 2.33 0.00 11.00 300 246 82.00<br />
E. pubescens 300 7.00 1.67 0.00 0.00 8.67 300 262 87.30<br />
E. chlorandrum 300 26.67 5.00 0.00 0.00 31.67 300 242 80.67<br />
E. davidii 300 9.11 1.62 11.6 16.00 38.33 300 230 76.67<br />
E. ecalcaratum 300 3.33 0.00 0.00 0.00 3.33 300 270 90.00<br />
(16.00%) and micronuclei (11.60%) was the<br />
highest (Table 2).<br />
The meiotic abnormalities found in the<br />
Epimedium analyzed here have accounted for<br />
pollen sterility. These meiotic abnormalities hinder<br />
the normal cell division and partially affected the<br />
pollen fertility. In E. davidii, the percentage of cells<br />
with meiotic abnormality was the highest (38.33%),<br />
while pollen fertility was the lowest (76.67%). High<br />
meiotic stability ensures high pollen fertility. For<br />
Epimedium hybrids, PMCs meiosis revealed minor<br />
abnormal chromosomal behaviors and high pollen<br />
fertility (Sheng et al., 2011). Table 2 shows that E.<br />
ecalcaratum had a low frequency (3.33%) of<br />
meiotic abnormality, as a consequence, a high<br />
pollen fertility (90.00%). Generally, the meiosis in<br />
Epimedium was stable (76.67%). The data available suggested that<br />
pollen fertility was significantly correlated with<br />
meiotic abnormality.<br />
In this paper, we provided a basic outline of<br />
meiosis in the genus Epimedium. Based on the<br />
data obtained, the PMCs split into four<br />
microspores and the whole meiosis was basically<br />
normal. The high pollen fertility was related to low<br />
level of meitotic abnormalities. The present paper<br />
enriches the database of cytology and can be<br />
useful for breeding program hybridization.<br />
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Sheng MY, Wang LJ, Tian XJ (2010). Karyomorphology of<br />
eighteen species of genus Epimedium (Berberidaceae) and<br />
its phylogenetic implications. Genet. Resour. Crop Evol. 57:<br />
1165-1176.<br />
Sheng MY, Chen QF, Wang Lj, Tian XJ (2011). Hybridization<br />
among Epimedium (Berberidaceae) species native to China.<br />
Sci. Hortic. 128: 342-351.<br />
Stearn WT (2002). The genus Epimedium and other<br />
herbaceous Berberidaceae. Timber Press, Portland<br />
Wu CS, Guo BL, Sheng YX, Zhang JL (2008). Simultaneous<br />
determination of seven flavonoids in Epimedium by liquid<br />
chromatographytandem mass spectrometry method.<br />
Chinese Chem. Lett. 19: 329-332.<br />
Xu YQ, Li ZZ, Wang Y, Huang HW (2007). Allozyme diversity<br />
and population genetic structure of three medicinal<br />
Epimediumspecies <strong>from</strong> Hubei. J. Genet. Genomics 34:<br />
56-71.<br />
Ying TS (2002). Petal evolution and distribution patterns of<br />
Epimedium L., (Berberidaceae). Acta Phytotax. Sin. 40:<br />
481-489.<br />
Zhang SZ, Pan KY, Zhang DM, Hong DY (1997). Observation<br />
on abnormal meiosis of pollen mother cells in Paeonia<br />
suffruticacosa subsp. spontacea. Acta. Bot. Sin. 39:<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16193-16201, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1203<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
In vitro antifungal activity of 63 Iranian plant species<br />
against three different plant pathogenic fungi<br />
Sohbat Bahraminejad 1 *, Saeed Abbasi 2 and Mehdi Fazlali 1<br />
1 Department of Agronomy and Plant Breeding, Campus of Agriculture and Natural Resources, Razi University,<br />
6715685438, Kermanshah, Iran.<br />
2 Department of Plant Protection, Campus of Agriculture and Natural Resources, Razi University, 6715685438,<br />
Kermanshah, Iran.<br />
Accepted 19 September, 2011<br />
Crude aqueous and methanolic extracts of 63 plant species belonging to 23 families collected <strong>from</strong> the<br />
west of Iran were screened for antifungal activity against three economically important<br />
phytopathogenic fungi, Cochliobolus sativus, Fusarium oxysporum and Rhizoctonia solani. Bioassay of<br />
extract was conducted by paper disc diffusion method on agar plate cultures with four replications. 21<br />
of the 63 (33%) plant species showed inhibitory activity against at least one of the fungi. 16 (25%), 10<br />
(16%) and 16 (25%) tested plant species inhibited the mycelial growth of R. solani, F. oxysporum and C.<br />
sativus, respectively. Centaurea behen, Lavandula sp., roots of Tribulus terrestris were the most active<br />
plant species against R. solani, F. oxysporum, and C. sativus, respectively. Extracts of Glycyrrhiza<br />
glabra, Rosmarinus officinalis, Avena sativa, Vaccaria pyramidata, Centaurea behen, Anagalis arvensis<br />
and T. terrestris exhibited a broad-spectrum of antifungal activity. According to these results, we<br />
conclude that the flora in the west of Iran can be regarded as a rich source of plants with antifungal<br />
activity. Therefore, further screening of other plant species, identifying active fractions or metabolites<br />
and in vivo application of active extracts are warranted.<br />
Key words: Antifungal activity, crude extract, Iranian plants, paper disc, phytopathogenic fungi.<br />
INTRODUCTION<br />
Crop losses due to plant diseases are estimated to be<br />
about 14% worldwide (Agrios, 2005) and 20% for major<br />
foods and cash crops (Oerke et al., 1994). Synthetic<br />
pesticides are the most effective method of the pest and<br />
disease control. In spite of hazardous impacts of<br />
chemical pesticide application including problems of<br />
public health, environmental pollution, toxic effect on nontarget<br />
organisms and ca<strong>using</strong> resistance in pest and<br />
disease agents (Rai and Carpinella, 2006; Kagale et al.,<br />
2004), it is believed that fungicides will remain essential<br />
for the control of plant diseases and it should be<br />
optimized under integrated pest management programs<br />
(Gullino et al., 2000). Integrated pest management (IPM)<br />
*Corresponding author. E-mail: sohbah72@hotmail.com.<br />
Tel/Fax: +98 8318323731.<br />
for conserving agro-ecosystem include the use of pestresistance<br />
cultivars, holding pests at tolerable levels and<br />
making use of natural products (Rai and Carpinella,<br />
2006).<br />
Regarding the problems created by synthetic pesticide<br />
application, environmentally safe methods are needed to<br />
replace chemical pesticides or reduce their consumption<br />
in ecosystem. Therefore, considerable search for<br />
biocides that are environmentally safe and easily<br />
biodegradable have been carried out during last two<br />
decades (Duke et al., 2003; Teggne et al., 2008).<br />
Investigation of plants containing natural antimicrobial<br />
metabolites for plant protection has been identified as a<br />
desirable method of disease control (Rai and Carpinella,<br />
2006; Kim et al., 2002). Given the effect of the plant<br />
species origin and genetic diversity on chemical<br />
composition, studies screening for novel antifungal<br />
compounds in plants <strong>from</strong> different part of the world are
16194 Afr. J. Biotechnol.<br />
needed. Hence, in this research, we screened plants<br />
<strong>from</strong> west of Iran.<br />
Iran is divided to 31 provinces including Kermanshah<br />
and Hamadan, with a vast range of climatic conditions<br />
located in the west of the country. Plant diversity is very<br />
rich in these two provinces; therefore, it is expected to<br />
find significant and distinct variation in secondary<br />
metabolites with antifungal activity. Iranian plants have<br />
been screened previously for antimicrobial activity<br />
(Sardari et al., 1998; Fazly Bazzaz et al., 1997; Fazly<br />
Bazzaz and Haririzadah, 2003; Shahidi Bonjar et al.,<br />
2004), but with a focus on activity against agents of<br />
diseases in human. There have been no screening<br />
studies for activity of Iranian plants against the<br />
phytopathogenic fungi.<br />
In this study, three destructive phytopathogenic fungi,<br />
Cochliobolus sativus, Fusarium oxysporum and<br />
Rhizoctonia solani were considered to test the antifungal<br />
activity of plant species. All the fungi are phytopathogenic<br />
fungi at farm level. Regarding the importance of<br />
screening plant crude extracts as first step of the project<br />
and the importance of bioactive crude extracts as ecofriendly<br />
agents, collected plants <strong>from</strong> the west of Iran<br />
were screened against all three fungi. The objective of<br />
the research was, as a part of larger screening program,<br />
to assess the antifungal activity of extracts <strong>from</strong> 63<br />
randomly-collected plant species in Kermanshah and<br />
Hamadan.<br />
MATERIALS AND METHODS<br />
Plant material and fungi<br />
63 plant species <strong>from</strong> 23 families were collected <strong>from</strong> the various<br />
parts of the provinces of Kermanshah and Hamadan in Western<br />
Iran (Table 1). As a part of a wider screening program, plants were<br />
randomly collected to increase the chance of finding plants with<br />
bioactive extracts. The plants were identified by the Herbarium at<br />
Razi University, College of Agriculture and the scientific names<br />
were checked in the International Plant Names Index<br />
(http://www.ipni.org/ipni/plantnamesearchpage.do). Each sample<br />
was cleaned, air dried in the shade and ground to a fine powder<br />
with a coffee grinder. More also, three economically important<br />
phytopathogenic fungi, C. sativus (S. Ito and Kurib.), F. oxysporum<br />
Schlecht. and R. solani Kühn were provided by the Agriculture and<br />
Natural Resources Research Centre of Kermanshah and the Plant<br />
Pathology Laboratory, College of Agriculture, Razi University.<br />
Preparation of plant extracts<br />
The powdered plant materials were extracted at room temperature<br />
<strong>using</strong> water and methanol. Aqueous extraction was achieved by<br />
adding 100 ml distilled water to 5 g of plant powder and brought to<br />
boil. Once boiled, the suspension was allowed to stand for 4 h<br />
before being filtered. The extract was then concentrated <strong>using</strong> a<br />
rotary evaporator. A sample of extract at concentration of 100<br />
mg/ml was bioassayed as described in bioassay section.<br />
Methanolic extracts were also obtained as described by<br />
Bahraminejad et al. (2006). Briefly, 5 g ground sample was<br />
extracted with 100 ml methanol for 24 h by shaking on an orbital<br />
shaker at 300 rpm. Then 30 ml distilled water was added to 70 ml of<br />
the methanolic extract and lipids were removed with 100 ml nhexane<br />
mixed at 250 rpm for 2 h. Methanolic phase was<br />
concentrated <strong>using</strong> a rotary evaporator. Finally, the residues were<br />
dissolved in 45% methanol in distilled water and a sample of extract<br />
at a concentration of 100 mg/ml for bioassay was provided.<br />
Bioassay<br />
Fungal bioassay was performed as previously described<br />
(Bahraminejad et al., 2008) <strong>using</strong> the paper disc method to reveal<br />
any inhibitory effect of plant crude extracts. Each autoclaved filter<br />
paper disc (6 mm diameter) was loaded with 5 × 10 µL of the crude<br />
extract (equal to 5 mg/disc). The discs were dried between each<br />
application. Negative control discs were prepared with 5 × 10 µL of<br />
the appropriate solvent, sterile water or 45% methanol. Positive<br />
control discs at concentration of 1 mg/disc were prepared with<br />
mancozeb, carboxin thiram and benomyl against C. sativus, R.<br />
solani and F. oxysporum, respectively. Loaded paper discs were<br />
placed on the growth medium about 10 mm <strong>from</strong> the margin of the<br />
growing mycelia. Five millimeter in diameter plug of each fungus<br />
was transferred to potato dextrose agar (PDA) media and incubated<br />
at 25°C in the dark until mycelia reach to approximately 25 mm<br />
<strong>from</strong> the edge of the plate. After addition of the paper discs the<br />
plates were further incubated at 25°C and radius zone of inhibition<br />
(distance between the centre of the paper disc and margin of<br />
inhibited mycelia <strong>from</strong> three different directions) was recorded.<br />
Each plate was examined for any inhibitory effect every 2 h for fastgrowing<br />
fungus, R. solani and every 6 h for the other fungi. Four<br />
replicates plates were prepared for all extracts and controls and the<br />
experiment repeated twice.<br />
RESULTS<br />
Antifungal activities of the extracts are presented in Table<br />
1. Of the 63 species tested, 21 (33%) showed activity<br />
against at least one tested fungi. 16 of 63 plant species<br />
screened (25%) measurably inhibited the mycelial growth<br />
of R. solani, with the most active extracts being <strong>from</strong> the<br />
following (in order for decreasing effect): Centaurea<br />
behen, Xanthium strumarium (Figure 1a), Vaccaria<br />
pyramidata, Glycyrrhiza glabra, Oliveria decumbens,<br />
Sisymbrium sp., Avena sativa and Ferulago angulata,<br />
Extracts of 10 plants (16%) inhibited the growth of F.<br />
oxysporum, with the extracts of Lavandula sp., G. glabra,<br />
Anagallis arvensis (Figure 1b) and A. sativa giving the<br />
most marked activity. 16 of the extracts (25%) exhibited<br />
activity against C. sativus with the greatest response <strong>from</strong><br />
extracts of Tribulus terrestris, Sorghum halepense, X.<br />
strumarium, G. Glabra (Figure 1c), V. pyramidata, A.<br />
arvensis (Figure 1d) and C. behen. For two of the fungi,<br />
R. solani and C. sativus, some plant extracts at<br />
concentration of 5 mg/disc gave similar inhibition to the<br />
fungicides applied at concentration of 1 mg/disc. Extracts<br />
of C. behen, X. strumarium, V. pyramidata, G. glabra, O.<br />
decumbens, Sisymbrium sp., A. sativa and F. angulata<br />
showed similar or even more inhibitory effect than<br />
carboxin thiram when tested against R. solani. Extracts of<br />
T. terrestris, S. halepense, X. strumarium and G. Glabra,<br />
inhibited the growth of C. sativus similar to mancozeb.
Figure 1. Inhibitory effect of plant extracts (5 mg/paper disc) of different<br />
plant pathogenic fungi on potato dextrose agar: a) Xanthium strumarium<br />
against Rhizoctonia solani, b) Anagallis arvensis against Fusarium<br />
oxysporum, c) Anagallis arvensis against Cochliobolus sativus, and d)<br />
Glycyrrhiza glabra against Cochliobolus sativus.<br />
None of the extracts showed inhibition similar to benomyl<br />
when tested against F. oxysporum (Tables 1 and 2).<br />
Data presented in Table 1 showed that the extracts of<br />
G. glabra, R. officinalis, A. sativa, V. pyramidata, C.<br />
behen, A. arvensis and T. terrestris exhibited broadspectrum<br />
antifungal activity, inhibiting all three fungi. In<br />
this research, two different solvents were used to elicit<br />
the antifungal compounds in plant species. The results of<br />
radius inhibition zone (Table 1) which may correlate to<br />
quality and quantity of antifungal compounds indicated<br />
that antifungal compounds in the most of the plant<br />
species with anti-Rhizoctonia, anti-Fusarium, and anti-<br />
Cochliobolus activity were extracted by methanol.<br />
DISCUSSION<br />
Results indicate the presence of antifungal compounds in<br />
the different extracts (Table 1), which was in agreement<br />
with the results reported by other researchers on different<br />
pathogens (Qasem and Abu-blan, 1996; Wuben et al.,<br />
1996; Bahraminejad et al., 2008; Kostova and Dinchev,<br />
2005). The broad spectra of inhibitory effect of G. glabra,<br />
R. officinalis, A. sativa, V. pyramidata, C. behen, A.<br />
arvensis and T. terrestris indicated that these extracts are<br />
potent antifungal plants with possible potential for the<br />
Bahraminejad et al. 16195<br />
control of different fungal diseases in plants. Therefore,<br />
more research on the activity of them against the other<br />
plant pathogenic fungi would be of value. The broad<br />
antimicrobial activity of the plant species was shown to<br />
be related to the presence of saponins, alkaloids and<br />
tannins (Ndukwe et al., 2005). The antifungal activity of<br />
A. sativa and T. terrestris probably may be due to<br />
presence of saponins in their content (Crombie and<br />
Crombie, 1986; Wuben et al., 1996; Bahraminejad et al.,<br />
2008; Kostova and Dinchev, 2005). The strong activity of<br />
R. officinalis as a broad active plant in this study was also<br />
documented by Aye and Matsumoto (2011).<br />
Furthermore, screening indicated that few numbers<br />
(16%) of studied plant species showed anti-Fusarium<br />
activity when compared to the other two fungi and all of<br />
the active extracts revealed less inhibitory effect than<br />
benomyl, thus indicating that this fungus shows more<br />
resistance to plant extracts. This kind of resistance in the<br />
fungus was previously discussed by Agrios (2005) who<br />
stated that Fusarium is a soil-inhabitant fungus and can<br />
adopt itself to lower level of toxic material. This may be<br />
the reason why we could not find plant extract with<br />
activity higher than benomyl. It has also been found that<br />
the methanolic extract of L. officinalis is the most active<br />
plant extract against F. oxysporum. This result was<br />
therefore in agreement with previous study showing the
16196 Afr. J. Biotechnol.<br />
Table 1. In vitro screening for antifungal activity (mean ± standard error, n = 4) of plant extracts at 5 mg/paper disc. Each mean was calculated<br />
<strong>from</strong> four replicates.<br />
Plant Family<br />
Part<br />
used<br />
Ixiolirion tataricum Hall (Pall.) Amaryllidaceae Total<br />
Artedia squamata L. Apiaceae Total<br />
Bupleurum kurdicum Boiss. Apiaceae Total<br />
Ferulago angulata Boiss. Apiaceae Flower<br />
Johrenia aromatica Rech.f. Apiaceae Shoot<br />
Oliveria decumbens Vent. Apiaceae Total<br />
Prangos ferulacea Lindl. Apiaceae Shoot<br />
Torilis sp. Apiaceae Total<br />
Carduus arabicus Jacq. Asteraceae Shoot<br />
Centaurea behen L. Asteraceae Total<br />
Crupina crupinastrum Vis. Asteraceae Total<br />
Cynara scolymus L. Asteraceae Fruit<br />
Echinops ritrodes Bunge Asteraceae Shoot<br />
Gundelia tournefortii L. Asteraceae Total<br />
Silybum marianum (L.) Gaertn. Asteraceae<br />
Leaf+<br />
root<br />
Taraxacum sp. Asteraceae Shoot<br />
Xanthium strumarium L. Asteraceae Shoot<br />
Alyssum strigosum Soland Brassicaceae Total<br />
Conringia orientalis L. Brassicaceae Total<br />
Solvent Rhizoctonia<br />
Plant Pathogen<br />
Fusarium Cochliobolus<br />
solani oxysporum sativus<br />
W NI NI NI<br />
M 9.53 ± 0.3* NI 7.00 ± 0.5<br />
W NI NI NI<br />
M NI NI NI<br />
W 7.96 ± 0.3 WI WI<br />
M NI WI 7.00 ± 0.1<br />
W NI NI NI<br />
M 10.90 ± 0.6 NI 7.67 ± 0.9<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M 11.37 ± 0.6 NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI WI WI<br />
M WI NI NI<br />
W NI NI WI<br />
M NI NI NI<br />
W 9.67 ± 0.4 6.25 ± 0.8 7.75 ± 0.3<br />
M 15.25 ± 0.3 6.67 ± 0.6 9.29 ± 0.5<br />
W WI NI WI<br />
M WI NI NI<br />
W NI NI WI<br />
M WI NI 7.29 ± 0.5<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI ND<br />
M NI NI ND<br />
W WI NI WI<br />
M WI NI WI<br />
W WI WI WI<br />
M 12.58 ± 0.9 WI 13.46 ± 0.4<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M WI NI NI
Table 1 cont.<br />
Goldbachia laevigata DC. Brassicaceae Total<br />
Isatis lusitanica L. Brassicaceae Total<br />
Matthiola arabica Boiss. Brassicaceae Total<br />
Nasturtium officinale W.T.Aiton Brassicaceae Total<br />
Neslia apiculata Fisch., C.A.Mey.<br />
& Avé-Lall.<br />
Brassicaceae Total<br />
Sameraria stylophora Boiss. Brassicaceae Total<br />
Sisymbrium sp. Brassicaceae Total<br />
Gypsophylla sp. Caryophyllaceae Shoot<br />
Vaccaria pyramidata Medik. Caryophyllaceae Total<br />
Capparis spinosa L. Capparidaceae Shoot<br />
Chrozophora tinctoria A. Juss. Euphorbiaceae Shoot<br />
Pisum sativum L. Fabaceae Total<br />
Glycyrrhiza glabra L. Fabaceae Shoot<br />
Scorpiurus muricatus L. Fabaceae Total<br />
Muscari neglectum Guss. ex Ten Hyacinthaceae Total<br />
Lallemantia sp. Lamiaceae Total<br />
Lamium amplexicaule L. Lamiaceae Total<br />
Lavandula officinalis Caix Lamiaceae Shoot<br />
Rosmarinus officinalis L. Lamiaceae Shoot<br />
Salvia sclarea L. Lamiaceae Shoot<br />
Bahraminejad et al. 16197<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI 6.00 ± 0.4<br />
M NI WI NI<br />
W NI NI NI<br />
M WI NI WI<br />
W NI WI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M 11.33 ± 0.7 NI WI<br />
W NI NI NI<br />
M NI NI NI<br />
W 10.29 ± 0.3 6.25 ± 0.3 10.75 ± 0.5<br />
M 12.21 ± 0.9 WI 10.92 ± 0.3<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI AMI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W 11.88 ± 0.1 7.83 ± 0.4 WI<br />
M 11.75 ± 0.1 10.83 ± 1 12.54 ± 0.1<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M 5.00 ± 0.3 NI NI<br />
W NI NI NI<br />
M NI NI WI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M 6.34 ± 0.3 10.87 ± 0.5 NI<br />
W NI NI NI<br />
M 6.58 ± 0.2 9.00 ± 0.2 6.67 ± 0.5<br />
W NI NI NI<br />
M NI 6.54 ± 0.6 NI
16198 Afr. J. Biotechnol.<br />
Table 1 cont.<br />
Thymus kotschyanus Boiss. &<br />
Hohen.<br />
Lamiaceae Shoot<br />
Stachys lavandulifolia Vahl Lamiaceae Shoot<br />
Salvia multicalus Vahl. Lamiaceae Shoot<br />
Stachys inflate Benth Lamiaceae Shoot<br />
Gagea sp. Liliaceae Total<br />
Abutilon theophrasti Medik. Malvaceae Total<br />
Hibiscus trionum L. Malvaceae Shoot<br />
Olea europaea L. Oleaceae<br />
Fruit<br />
Leaf +<br />
Stem<br />
W NI NI NI<br />
M NI WI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W WI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M ND ND ND<br />
W NI NI NI<br />
M NI NI WI<br />
Orobanche alba Rchb. Orobanchaceae Total<br />
W<br />
M<br />
NI<br />
NI<br />
NI<br />
NI<br />
NI<br />
NI<br />
Shoot W 11.13 ± 0.4 9.05 ± 0.5 NI<br />
M 10.54 ± 0.3 NI NI<br />
Avena sativa L. Poaceae<br />
Root<br />
W<br />
M<br />
NI<br />
6.63 ± 0.4<br />
NI<br />
8.21 ± 0.4<br />
NI<br />
6.09 ± 0.3<br />
Echinochloa crus-galli L. Poaceae Total<br />
Sorghum halepense (L.) Pers Poaceae<br />
Shoot<br />
Rhizome<br />
Root<br />
Phalaris sp. Poaceae Total<br />
Portulaca oleraceae L. Portulacaceae Shoot<br />
Anagallis arvensis L. Primulaceae Total<br />
Callipeltis cucullaria (L.) DC. Rubiaceae Total<br />
Haplophyllum perforatum (MB.)<br />
Kar. and Kir.<br />
Rutaceae Total<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI 6.42 ± 0.7<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI 13.96 ± 1<br />
W WI WI NI<br />
M NI NI WI<br />
W NI NI NI<br />
M WI WI NI<br />
W WI WI WI<br />
M 9.03 ± 0.3 9.3 ± 0.5 9.61 ± 0.9<br />
W NI NI NI<br />
M NI WI WI<br />
W NI NI 7.00 ± 0.4<br />
M 9.23 ± 0.5 WI 11.29 ± 0.6
Table 1 cont.<br />
Scrophularia striata Boiss. Scrophulariaceae Shoot<br />
Linaria chalepensis (L) . Mill. Scrophulariaceae Total<br />
Scrophularia striata Boiss. Scrophulariaceae Total<br />
Veronica anagallis-aquatica L. Scrophulariaceae Total<br />
Datura stramonium L. Solanaceae<br />
Shoot<br />
Root<br />
Hyoscyamus reticalatus L. Solanaceae Total<br />
Valerianella sp. Valerianaceae Total<br />
Tribulus terrestris L. Zygophyllaceae<br />
Shoot<br />
Root<br />
Bahraminejad et al. 16199<br />
W WI NI NI<br />
M NI 5.75 ± 0.4 9.58 ± 0.3<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M WI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI NI<br />
M NI NI NI<br />
W NI NI WI<br />
M WI NI WI<br />
W WI NI NI<br />
M NI NI NI<br />
W 8.13 ± 0.4 6.65 ± 0.4 8.67 ± 0.2<br />
M 9.04 ± 0.1 NI 4.75 ± 0.3<br />
W 8.92 ± 0.7 NI 12.17 ± 0.1<br />
M 6.24 ± 0.3 NI 17.63 ± 0.1<br />
*Mean of radius inhibition zone (mm) ± standard error; W, water; M, methanol; NI, no inhibition; WI, weak inhibition; AMI, Aerial mycelium<br />
inhibited; ND, not done.<br />
Table 2. Inhibitory effect of fungicides used as positive controls (mean ± standard error, n = 6) at 1 mg/ disc.<br />
Fungicide<br />
Plant Pathogen<br />
Rhizoctonia solani Fusarium oxysporum Cochliobolus sativus<br />
Mancozeb - - 12.22 ± 0.8<br />
Carboxin thiram 10.44 ± 0.4 - -<br />
Benomyl - 25.22 ± 0.5 -<br />
antifungal effect of L. officinalis against mycelial growth of<br />
F. oxysporum (Pawar and Thaker, 2007). In this study, X.<br />
strumarium with common name cocklebur (Asteraceae)<br />
also showed significant anti-R. solani and anti-C. sativus<br />
properties. The ant-Phytophthora drechsleri properties of<br />
cocklebur have been previously reported (Kim et al.,<br />
2002; Koko, 2007; Yanar et al., 2011). Kim et al. (2002)<br />
extracted and purified an anti-P. drechsleri compound<br />
<strong>from</strong> X. strumarium. This compound was identified as a<br />
sesquiterpene lactone called deacetyl xanthumin. The<br />
results of the present work confirmed the presence of<br />
toxic substances of X. strumarium shown in previous
16200 Afr. J. Biotechnol.<br />
study.<br />
In this study, three of the seven plant species in<br />
Apiaceae, two of the eight plant species in Asteraceae,<br />
two of the nine plant species in Brassicaceae, three of<br />
the nine tested plant species in Lamiceae and three of<br />
four plant species in Poaceae showed antifungal activity.<br />
Although, the number of tested plant species in each<br />
family was not in high frequency, it can be concluded that<br />
inhibitory effect is not family dependent. This finding is in<br />
agreement with the results reported by Qasem and Abu-<br />
Blan (1996) on some other pathogens. However, the<br />
taxonomic distribution for phytoalexin production was well<br />
reviewed by Grayer (1994) and is not in agreement with<br />
the results of our study. He reported a high frequency of<br />
plant species of Fabaceae and low frequency of<br />
Rosaceae with antimicrobial activity. Differences in the<br />
toxicity of the extracts could be due to their solubility in<br />
water and methanol and results might be influenced by<br />
the solubility of the active substances in the solvent with<br />
higher solubility of the most active plant extracts in the<br />
water or methanol. Therefore, it can be concluded that<br />
different plants need different extracting solvent. The<br />
finding of this study supported the observation of Eloff<br />
(1998) who ranked extractants based on their ability to<br />
solubilize antimicrobial compounds <strong>from</strong> plants,<br />
biohazards and ease of removal of solvents <strong>from</strong><br />
fractions. Eloff ranked methanol in second to methylene<br />
dichloride and superior to ethanol and water. However,<br />
application of the other solvents could be useful to extract<br />
more toxic metabolites <strong>from</strong> the plants reported in this<br />
work.<br />
As Chitwood (2002) stated, the results of these kind of<br />
research could help to develop new natural fungicide,<br />
chemically synthesized derivatives or to grow the plants<br />
with antifungal activity in a crop rotation program. These<br />
results will also help to find out the active metabolites in<br />
active plants and subsequently used in reverse genetic<br />
engineering <strong>from</strong> metabolites to genes. Regarding the<br />
allelopathic properties of oats (Avena sativa), oat can be<br />
grown in a crop rotation program to suppress and break<br />
the cycle of soil-borne plant pathogenic fungi (Schrickel,<br />
1986). Therefore, oat as a known crop plant in Iran could<br />
help to reduce the severity of soil borne diseases in<br />
wheat farms. These results and the acceptable<br />
percentage of the plants with antifungal activity (33% in<br />
this research) indicated that the flora in the west of Iran<br />
can be regarded as a rich source of plants with antifungal<br />
activity. These findings encouraged us to continue<br />
screening more plant species for antifungal agents.<br />
The results of this study may form the basis of further<br />
investigation on fractionation for finding active fractions,<br />
the effect of origin of growth on the quality and quantity of<br />
active compounds, the amount of bioactive compounds in<br />
different plant parts and finally in vivo application of the<br />
extracts. Therefore, further investigations are being<br />
conducted on X. strumarium, A. arvensis, and T.<br />
terrestris as they showed more durability of inhibition and<br />
wide range of effects against different fungi.<br />
REFERENCES<br />
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York, NY.<br />
Aye SS, Matsumoto M (2011). Effect of some plant extracts on<br />
Rhizoctonia spp. and Sclerotium hydrophilum. J. Med. Plant Res.<br />
5(16): 3751-3757<br />
Bahraminejad S, Asenntorfer R E, Riley IT, Schultz CJ (2008). Analysis<br />
of the antimicrobial activity of flavonoids and saponins isolated <strong>from</strong><br />
the shoots oats (Avena sativa L.). J. Phytopathol. 156:1-7.<br />
Bahraminejad S, Asenntorfer RE, Riley IT, Zwer P, Schultz CJ, Schmidt<br />
O (2006). Genetic variation of flavonoid defense compound<br />
concentration in oat (Avena sativa L.) entries and testing of their<br />
biological activity. Proc Australasian Plant Breeding Conference,<br />
Christchurch, New Zealand 18-21 May 2006.pp. 1127-1132.<br />
Chitwood DJ (2002). Phytochemical based strategies for nematode<br />
control. Annu. Rev. Phytopathol. 40:221-49<br />
Crombie WML, Crombie L (1986) Distribution of avenacins A-1, A-2, B-<br />
1 and B-2 in oat Avena sativa roots their fungicidal activity towards<br />
take-all fungus Gaeumannomyces graminis. Phytochemistry, 25:<br />
2069-2074.<br />
Crombie WML, Crombie L, Green JB, Lucas JA (1986) Pathogenicity of<br />
take-all fungus to oat: its relationship to the concentration and<br />
detoxification of the four avenacins. Phytochemistry, 25: 2075-2083.<br />
Duke SO, Baerson AR, Dayan FE, Rimando AM, Scheffler BE, Tellez<br />
MR, Wedge DE, Schrader KK, Akey DH, Arthur FH, DeLucca AJ,<br />
Gibson DM, Harrison HF, Peterson JK, Gealy DR, Tworkoski T,<br />
Wilson CL, Morris JB (2003). United States department of<br />
Agriculture-Agricultural Research Service Research on natural<br />
products for pest management. Pest Manag. Sci. 59: 708-717<br />
Eloff, JN (1998). Which extractant should be used for the screening and<br />
isolation of antimicrobial components <strong>from</strong> plants? J.<br />
Ethnopharmacol. 60:1-8<br />
Fazly B B S, Haririzadeh G, Imami SA, Rashed MH (1997). Survey of<br />
Iranian plants for alkaloids, flavonoids, saponins, and tannins<br />
[Khorasan Province]. Int. J. Pharmacogn. 35 (1): 17-30<br />
Fazly B BS, Haririzadeh G (2003). Screening of Iranian plants for<br />
antimicrobial activity. Pharm. Biol. 41 (8): 573-583<br />
Grayer RJ, Harborne JB (1994).A survey of antifungal compounds <strong>from</strong><br />
higher plants. Phytochemistry, 37(1):19-42<br />
Gullino ML, Leroux P, Smith CM (2000). Uses and Challenges of novel<br />
compounds for plant disease control. Crop Prot. 19:1-11<br />
Kagale S, Marimuthu T, Thayumanavan B, Nandakumar R,<br />
Samiyappan R (2004). Antimicrobial activity and Induction of<br />
systemic resistance in rice by leaf extract of Datura metel against<br />
Rhizoctonia solani and Xanthomonas oryzae pv. Oryzae. Physiol.<br />
Mol. Plant P. 65:91-100<br />
Kim DK, Shim CK, Bae DW, Kawk YS, Yang MS, Kim HK (2002).<br />
Identification and biological characteristics of an antifungal compound<br />
extracted <strong>from</strong> cocklebur (Xanthium strumarium) against<br />
Phythopthora drechsleri. Plant Pathol. J. 18: 5, 288-292.<br />
Koko WS (2007). Antimalarial activity of Xanthium brasilicum Vell. In<br />
vitro and toxicological approaches. Nat. Prod. 15: 1-10.<br />
Kostova I, Dinchev D (2005). Saponins in Tribulus terrestris– chemistry<br />
and bioactivity. Phytochem. Rev. 4: 111-137<br />
Ndukwe Kc, Okeke In, Lamikanra A, Adesina Sk, Aboderin O (2005).<br />
Antibacterial activity of aqueous extracts of selected chewing sticks.<br />
J.Contemp.Dent Pract. 6 (3): 86-94<br />
Oerke EC, Dehne HW, Schonbeck F, Weber A (1994). Crop protection<br />
and crop production. Elsevier, Amsterdam, 808 pp.<br />
Pawar VC, Thaker VS (2007). Evaluation of the anti-Fusarium<br />
oxysporum f.sp cicer and anti-Alternaria porri effects of some<br />
medicinal essential oils. World J. Microbiol. Biotechnol. 23:1099-<br />
1106.<br />
Qasem JR, Abu-Blan HA (1996). Fugicidal activity od some common<br />
weed extracts against different plant pathogen fungi. J. Phytopathol.<br />
144: 157-161.<br />
Rai M, Carpinella M (2006). Naturally Occurring Bioactive compounds.<br />
Elsevier, Amsterdam : 502.<br />
Sardari S, Amin G, Micetich GR, Daneshtalab M (1998).<br />
Phytopharmaceuticals. Part 1. Antifungal activity selected Iranian and<br />
Canadian plants. Pharm. Biol. 36 (3): 180-188.
Schrickel DJ (1986). Oats production, value and use. Pages 1-11 in:<br />
Oats:Chemistry and Technology. F. H. Webster, ed. American<br />
Association of Cereal Chemists, St. Paul, MN.<br />
Shahidi Bonjar GH, Aghighi S, Karimi Nik A (2004). Antibacterial and<br />
antifungal survey in plants used in indigenous herbal-medicine of<br />
south east regions of Iran. J. Biol. Sci. 4(3): 405-412.<br />
Bahraminejad et al. 16201<br />
Yanar Y, Kadio I, Gökçe A, Demirta I, Gören N, Çam H, Whalon M<br />
(2011). In vitro antifungal activities of 26 plant extracts on mycelial<br />
growth of Phytophthora infestans (Mont.) de Bary. Afr. J. Biotechnol.<br />
10(14): 2625-2629.
African Journal of Biotechnology Vol. 10(72), pp. 16202-16208, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1406<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Effects of different photoperiods and concentrations of<br />
phosphate on the growth of the cyanobacterium<br />
Cylindrospermopsis raciborskii (Woloszynska)<br />
Sabahi asl Mitra , Nejatkhah Parisa 1 , Ramezanpour Zohreh 2 , Heidary Negin 1<br />
1 Islamic Azad University, North Tehran Branch, Faculty of Marine Science and Technology, Marine Biology Group,<br />
Tehran, Iran.<br />
2 International Sturgeon Research Institute, P.O Box: 41635-3464, Rasht, Iran.<br />
Accepted 5 October, 2011<br />
The freshwater cyanobacterium, Cylindrospermopsis raciborskii is potentially toxic and widely<br />
distributed in tropical and sub-tropical regions. This species is highly abundant throughout the Anzali<br />
Lagoon during the months of July and August. The effects of four different photoperiods (L/D 12:12,<br />
10:14, 14:10, 8:16) as well as three different concentrations of phosphate (2 fold, 3 fold and half of the<br />
main culture) on growth rates of C. raciborskii were studied. C. raciborskii, isolated <strong>from</strong> water samples<br />
collected <strong>from</strong> the Anzali Lagoon, was cultured in Zehnder 8 media (<strong>using</strong> Z8 without a nitrogen source)<br />
under light intensity of 3000 Lux at 252°C. A control group cultured with the main culture medium was<br />
also used. This experiment was carried out for 25 days. Inoculants and C. raciborskii cells were counted<br />
every other day throughout the experiment period <strong>using</strong> a Neubauer chamber and specific growth rates<br />
(SGR) and cell division rates (G) were estimated. The maximum growth rate (8x10 6 ± 5 cells ml -1 ) was<br />
observed at 12 L:12 D photoperiod followed by 14 L:10 D, 10 L:14 D and 8 L:16 D. The results obtained<br />
in the present study especially with 14 L:10 D and 12 L:12 D were in complete agreement with general<br />
growth pattern of C. raciborskii observed in warmer months with rather longer daytime in tropical and<br />
subtropical areas. The maximum growth rates were observed in the group treated with 2 fold PO4<br />
concentration. The strategy of growth in this species may depend on nitrogen fixation, when other<br />
algae were nitrogen limited and fast PO4 uptake even if very low concentration is available.<br />
Key words: Cyanobacteria, Cylindrospermopsis raciborskii, Anzali Lagoon, photoperiod, phosphate, growth<br />
rate.<br />
INTRODUCTION<br />
Dehiscence of Cyanobacteria produces dangerous<br />
poisons in native water which leads to serious problems<br />
worldwide. Besides, loss of many species in lakes, rivers,<br />
estuaries, oceans and storage water systems are among<br />
the crucial effects of this phenomenon (Wilson et al.,<br />
1999). Physiological capacities of Cyanobacteria are<br />
highly dominant in competence with other phytoplankton<br />
species (Duval et al., 2005). Cylindrospermopsis<br />
*Corresponding author. E-mail: Mitra.sabahi2@gmail.com.<br />
Abbreviations: SGR, Specific growth rates; ANOVA, one-way<br />
analysis of variance.<br />
raciborskii belongs to Nostocaceae family and<br />
Oscillatoriales order <strong>from</strong> Cyanobacteria.<br />
C. raciborskii (Woloszynska, 1972) is kind of<br />
Cyanobacteria which can produce poison. C. raciborskii<br />
is identified by the presence of gas vacuoles and by the<br />
shape and dimensions of terminal heterocysts, vegetation<br />
cells and trichomes (Wilson et al., 1999). In this species,<br />
one or two heterocysts are observable at both ends of the<br />
trichome as a candle flame (Figure 1). Akinetes are<br />
normally oval form placed inactively near heterocysts and<br />
include spherical cells. Note that growth cell walls are<br />
covered by nuclear cells, including clear gas vacuoles<br />
(Hawkins et al., 1985). Recent studies have explored that<br />
this species has a permanent effect on mice and also<br />
infect and destroy liver tissue. Note t hat the produced
Figure 1.Cylindrospermopsis raciborskii sampled <strong>from</strong> Anzali Lagoon (x400).<br />
poison damage kidneys, adrenal glands, lungs and<br />
intestines. Probably, this complication occurs in humans<br />
and other mammalian (Hawkins et al., 1985). There are<br />
various factors that affect upon the combination and<br />
succession of phytoplankton and cyanobacteria including<br />
light, temperature, concentration of nutritional material,<br />
simulative and preventive material which influence upon<br />
growth and elective feeding (Ahelgern, 1977).<br />
Blooms of cyanobacteria threaten aquatic life. The<br />
cyanobacter C.raciborskii blooms lead to animal fatalities<br />
and human poisoning in various countries such as<br />
Iceland, 1999, Florida, 1997, Japan, 1999, Africa, 2004,<br />
and Australia, 1998-2001(Chapman and Schelske, 1997;<br />
Zakaria and Al-Shehri, 2004). In tropical regions, the<br />
algae growth is the same in all months of the year<br />
because of uniform environmental conditions. However,<br />
in temperate zones, seasonal change cause physicchemical<br />
changes and thus, in some months, high growth<br />
of blue-green algae creates blooms in water (Bernard et<br />
al., 2004). Many different researchers reported about<br />
daily periodical influence of light and darkness upon<br />
phytoplankton and freshwater species like Oscillatoria<br />
agardhii. These reports state the importance of light<br />
intensity and quality on the occurrence of phenomena in<br />
lakes and sea. Though, according to Foy et al. (1993),<br />
light duration is an effective factor on the growth of<br />
phytoplankton that has different effects upon every<br />
species of algae. Phosphate plays a basic role on growth<br />
in all plants. Thus, decline in phosphate during the growth<br />
season is a limiting factor for algal growth. Also,<br />
phosphate is critical element in controlling the growth of<br />
cyanobacteria. This study attempts to investigate the<br />
influence different phosphate concentrations (2 fold, 3<br />
fold and half of the main culture) on growth of C.<br />
raciborskii and estimate the optimum growth conditions in<br />
different photoperiods (L/D 12:12, 10:14, 14:10, 8:16).<br />
MATERIALS AND METHODS<br />
Mitra et al. 16203<br />
Sampling <strong>from</strong> the Anzali Lagoon was carried out in the month of<br />
August of 2007 <strong>using</strong> plankton net (25 μm).Isolation and<br />
preparation of pure cultures of algae was carried out at the Ecology<br />
Department of the international Sturgeon Research Institute. The<br />
algal cells were cultured in Z8 medium (without nitrogen resources)<br />
(Kotai, 1972). All treatments were run in three replicates.<br />
Four different photoperiods (8 L:16 D, 14 L:10 D, 12 L:12 D, and 10<br />
L:14 D) were considered. To examine the influence of different<br />
concentrations of phosphate (PO4), three various treatments were<br />
studied <strong>using</strong> 6.2 gl -1 (two-fold), 9.3 gl -1 (three-fold) and 1.53 gl -1<br />
(half the amount of Z8 batch culture) (without nitrogen resources). A<br />
control group 3.1 gl -1 of Z8 (main culture) was also used. One<br />
milliliter of pure culture cells were inoculated to each treatment<br />
<strong>using</strong> a syringe pipette. The cellular concentration after injection at<br />
t0 time for each replicate was 10 4 cells ml -1 . Finally, cultivated tubes<br />
were placed in culture shelves for 25 days. The culture room<br />
temperature was adjusted to 25±2°C. Sample counting was<br />
performed daily and three repetitions were done for every sample<br />
by Neubauer chambers. SGR (µ) and G were calculated by the<br />
equations (Fogg and Thake, 1987):<br />
µ=lnx1-lnx0 (t1-t0).<br />
G=ln2µ1<br />
Where, X0 is the mean cellular number at t0 time; X1 is the mean<br />
cellular number at t1 time; µ is the specific growth rate (d -1 ); G is the<br />
generation time (d)<br />
Data analysis was performed by one-way analysis of<br />
variance (ANOVA) and Duncan’s separator test associated with<br />
Excel (2003) and SPSS (16.0) statistical software.<br />
RESULTS<br />
Result of different photoperiods<br />
Statistical analysis of different photoperiods results show<br />
significant differences on algal growth (Figure 2).
16204 Afr. J. Biotechnol.<br />
Average cell number per ml<br />
100000000<br />
10000000<br />
1000000<br />
100000<br />
1 3 5 7 9 11 13 15 17 19 21 23<br />
Day<br />
Figure 2. Mean cell number of Cylindrospermopsis raciborskii under different photoperiods.<br />
Photoperiods 12 L:12 D and 14 L:10 D with mean cell<br />
numbers 8×10 6 ± 5cells ml -1 and 7×10 6 ± 4 cells ml -1 ,<br />
respectively were higher than the other two<br />
treatments(P0.05) were detected for generation time of cellular<br />
division in day in the different groups studied.<br />
DISCUSSION<br />
In this study, the cells used in different treatments were<br />
selected <strong>from</strong> stationary phase of pure culture cells. Such<br />
cells reached to ultimate growth phase in initial<br />
environment and practically, they would be lost if were<br />
not transferred to new environment similar to their<br />
common conditions. Growth was observed after three<br />
days lag in all treatments (Figures 2 and 5). Lag (delay)<br />
time in phytoplankton response to suitable growth can<br />
influence bloom of phytoplankton in natural environments<br />
and experimental culture (Smith et al., 1992). Examination<br />
of lag time in initial growth of different treatments<br />
indicated that light does not influence upon lag phase.<br />
However, existence of lag time in growth phase is highly<br />
attributed to the age of pure culture cells (Fogg and Take,<br />
1987).<br />
According to obtained results, there is delay in duration<br />
of growth phase. In treatments under 10 L:14 D
Growth rate d -1<br />
0.8<br />
0.7<br />
0.6<br />
0.5<br />
0.4<br />
0.3<br />
0.2<br />
0.1<br />
0<br />
12:12 10:14 8:16 14:10<br />
Photoperiod<br />
Figure 3. Growth rate of Cylindrospermopsis raciborskii under different photoperiods (±SE)<br />
G (d)<br />
1.2<br />
1.0<br />
0.8<br />
0.6<br />
0.4<br />
0.2<br />
0.0<br />
12:12 10:14 8:16 14:10<br />
photoperiod<br />
Figure 4. Generation of cellular division of Cylindrospermopsis raciborskii under different<br />
photoperiods (±SE)<br />
photoperiod, delay in growth phase probably depends on<br />
young pure culture cells. With an increase in light time<br />
duration, the cellular concentration increases, whereas<br />
under this kind of light the growth rate is minimum as<br />
compared to that in other treatments. Also generation<br />
time of cellular division is short with increasing<br />
photoperiod. Hence, highest cellular division was<br />
recorded in treatments under 14 L:10 D and 12 L:12 D<br />
photoperiod.<br />
Mitra et al. 16205<br />
Increasing growth rates (µ) with increasing photoperiod<br />
was also observed. The influence of different<br />
photoperiods upon growth of C.raciborskii algae was<br />
studied by Shafik et al. (2001) and found that under 12<br />
L:12 D photoperiod, highest growth rates recorded were<br />
between (0.8 d -1 ) and (1 d -1 ). They also reported that<br />
photoperiods longer than 12 L:12 D reduced growth.<br />
These results are in agreement with those obtained <strong>from</strong><br />
this study where reduced growth rates (µ) were recorded
16206 Afr. J. Biotechnol.<br />
Average cell number per ml<br />
10000000<br />
1000000<br />
100000<br />
1 3 5 7 9 11 13 15 17 19 21 23 25<br />
Day<br />
Figure 5. Mean cell numbers of Cylindrospermopsis raciborskii in different concentrations of phosphate<br />
Growth rate d -1<br />
/<br />
0.3<br />
0.25<br />
0.2<br />
0.15<br />
0.1<br />
0.05<br />
0<br />
1.53 3.1 6.2 9.3<br />
Phosphate concentration(g/l)<br />
Figure 6. Growth rates of Cylindrospermopsis raciborskii in different concentration of<br />
phosphate (±SE).<br />
under the 14 L:10 D photoperiod. Continuous and high<br />
photoperiods such as 14 L:10 D, stimulate bio-production<br />
of Tillacoied and biosynthesis of chlorophyll in cells<br />
(Ibrahim, 1993). Increased synthesis of chlorophyll leads<br />
to increased photosynthesis and consequently results in<br />
increased production of photosynthesis in cell.<br />
If exposed to continuous light, there will not be enough<br />
time for consumption of these products. Investigations<br />
demonstrated that accumulation of materials obtained<br />
<strong>from</strong> photosynthesis such as glucose and carbohydrates<br />
can reduce photosynthesis intensity (Ibrahim, 1995).<br />
Thus, reducing photosynthesis will decrease cellular<br />
growth efficiency. In longer photoperiods, despite high<br />
cellular division speed and high cellular concentration,<br />
the cellular growth rate (µ) was low as compared to other<br />
3.1g/l<br />
6.2g/l<br />
9.3g/l<br />
1.53g/l<br />
photoperiods. On the other hand, shorter day length<br />
decreased growth rates of cyanobacteria and diatoms,<br />
and this decrease was greater in cyanobacteria (Foy and<br />
Gibson, 1993).<br />
Foy and Gibson (1993) observed that in comparison of<br />
cyanobacteria with Diatoms, there is severe reduction in<br />
growth process that resulted <strong>from</strong> photoperiod reduction.<br />
On this basis, minimum cellular concentration<br />
(accumulation) as well as SGR was observed in photo<br />
duration 8 L:16 D.<br />
Growth of most freshwater phytoplankton is regulated<br />
by the availability of phosphate Rhee (1980) and<br />
Thompson et al. (1994) suggested that under P limitation<br />
conditions, the growth is related to the P cell quota due<br />
mostly to a large storage capacity for P by these
G (d)<br />
0.45<br />
0.4<br />
0.35<br />
0.3<br />
0.25<br />
0.2<br />
0.15<br />
0.1<br />
1.53 3.1 6.2 9.3<br />
Phosphate concentration (gl -1 )<br />
Figure 7. Generation of cellular division of Cylidrospermopsis raciborskii in different<br />
concentrations of phosphate (±SE)<br />
organisms. Phosphate storage in cyanoprokaryotes<br />
appears to be much larger than other species, and this<br />
capacity was reported to give them a competitive<br />
advantage over diatoms and chlorophytes (Shafink et al.,<br />
2001). Highest mean cellular concentration recorded in<br />
the control group and in the group exposed to 6.2 gl -1<br />
phosphate indicates that limitation of phosphate even<br />
under desirable photo conditions reduces the rate of<br />
cellular chlorophyll, growth and photochemical capacity<br />
(Cullen and Maclnyre, 1998).<br />
Therefore, reducing or increasing the amount of<br />
phosphate in the environment resulted in the reduction of<br />
cellular division and cyanobacteria population. Desirable<br />
levels of phosphate in the culture environment and also<br />
increasing cellular division in this treatment could be the<br />
possible reason for increase in growth rate in the control<br />
group. Since cyanobacteria have high ability for<br />
absorption of phosphate even in case of the scarcity,<br />
reduction of environmental phosphate reduces<br />
photosynthesis rate and the effect of this reduced<br />
photosynthesis on cellular division and increased cellular<br />
division was significant. In the treatments exposed to<br />
(1.53 gl -1 ) phosphate, it appears that low concentration<br />
of phosphate in the initial stages of culture does not<br />
create limitation for growth process. Hence, cells absorb<br />
phosphate quickly and grow rapidly, however, as culture<br />
progresses further reduction in phosphate results in<br />
decreased cellular division and as well as reduction in<br />
mean cellular number.<br />
Previous investigations have demonstrated the<br />
relationship between phosphate intake and photoperiod.<br />
This explains increased cyanobactria growth during long<br />
days of the year (Litchman, 2003). It is evident <strong>from</strong> the<br />
results of the present study that in different treatments<br />
studied; C. raciborskii was compatible with photoperiod<br />
Mitra et al. 16207<br />
changes and different amounts of phosphate. Otherwise<br />
these algae would have to face a lot of problems in its<br />
natural life environment. In all treatments used in this<br />
study, cellular division and growth increase was observed.<br />
Ecological conditions are various ways<br />
which allow growth and dehiscence to occur in both<br />
tropical and sub-tropical regions. Tang and Vincent<br />
(2000) showed that growth and photosynthesis of pole<br />
cyanobacteria during day time depend on temperature.<br />
Finally, it was found that the growth of C. racibroskii<br />
algae is influenced by photo duration. The specific<br />
physiological traits possessed by this species explain its<br />
global distribution in various geographical regions. Three<br />
hypothesis may be considered in this regard; (1)<br />
colonies of this species are compatible with temperate<br />
climate and it may be suitable for advancement in the<br />
north latitude, (2) this species has wide range of<br />
tolerance <strong>from</strong> physiological perspective, (3) Climate<br />
changes resulting <strong>from</strong> global warming has resulted in<br />
greater dispersion and spreading of this species<br />
(Bernard and Dufour, 2004).<br />
This kind of cyanobacteria has high potential in storing<br />
phosphate and also it can be grown in various tropical<br />
lakes. Increased growth of C. raciborskii species in<br />
France-bech pool in France has been reported because<br />
of its compatibility and wide tolerance towards undissolved<br />
materials (Bernard and Dufour, 2004). On the<br />
other hand, Moisandr et al. (2002) reported that high<br />
salinity in estuary of Neuse Lake prevented the<br />
dominance of C. raciborskii species in that region.<br />
Reports about global dispersion of these algae indicate<br />
that C. raciborskii has high compatible ability and can<br />
also enter mid geographical latitudes. However, a global<br />
analysis of these results suggests that C. raciborskii has<br />
good adaptability, but poor ability to compete with micro
16208 Afr. J. Biotechnol.<br />
algae. This adaptability was demonstrated by the fact<br />
that C. raciborskii, which is described as a tropical<br />
cyanobacteria, is able to grow under different light and<br />
temperature conditions. In addition, C. raciborskii seems<br />
to be very tolerant of nutrient concentrations (Briand et<br />
al., 2001). This study probably shows that the growth<br />
strategy of cyanobacteria is under the effect of three<br />
factors: (1) Nitrogen fixation ability intermediate to<br />
existence of heterocysts when other algae groups face<br />
reduction in nitrate, (2) Ability of high phosphate<br />
absorption even when the amount of phosphate is low,<br />
(3) Growth ability lies in low light conditions and high<br />
temperature (Shafink et al., 2001). Thus, reduction and<br />
increasing of phosphate concentration in the<br />
environment is important as a preventive factor of<br />
growth. Eventually, it must be mentioned that colonies of<br />
C.raciborskii are different <strong>from</strong> the physiological and<br />
genetic perspectives. Hence, it must be emphasized that<br />
results <strong>from</strong> other studies indicate that special colony<br />
have considerable compatibility and other colonies show<br />
different behavior in this conditions.<br />
ACKNOWLEDGEMENTS<br />
The authors wish to appreciate Mr. Parandavar, the<br />
Head of the Ecology Department as well as Mrs. Marjan<br />
Sadeghi and Uma Arshad of the Hydrology laboratory for<br />
their valuable assistance in executing this investigation.<br />
Authors also want to show their gratitude to Mr. Hamid<br />
Reza Pourali, the Head of Nutrition Section of the<br />
International Sturgeon Research Institute.<br />
REFERENCES<br />
Ahlegern G (1977). Growth of Oscillatoria agardhii in chemostate<br />
culture nitrogen and phosphorus reqirement. Oikos, 29: 209-224.<br />
Bernard C, Dufour PH (2004). Cylindrospermopsis raciborskii<br />
(Cyanobacteria) invasion at mid-latitudes: Selection, wide<br />
physiological tolerance, Phycol. Soc. Am. 40: 231-238.<br />
Briand JF, Robillot C, Quiblier-Lloberas C, Humbert JF (2001).<br />
Environmental context of Cylindrospermopsis raciborskii<br />
(Cyanobacteria) blooms in a shallow pond in france. Water Res.<br />
36(2002): 3183-3192.<br />
Chapman AD, Schelske CL (1997). Recent appearance of<br />
Cylindros-permopsis (Cyanobacteria) in five hypertrophic Florida<br />
Lakes. J. Phycol. 33: 191-195.<br />
Cullen JJ, Maclntyer JG (1998). Behavior,physiology and the niche of<br />
depth_regulating Phytoplankton in : Physiol. Ecol. Harmful Algal<br />
Blooms, (ed . DM Andrerson,AD Cembella , GM Hallegraff).<br />
Springer. Berlin. 41: 559-579.<br />
Duval E, Gragnon B, Varliner D (2005). Effects of two<br />
cyanotoxins,Microcystin-LR and Cylindrospermopsin,on Euglena<br />
gracilis, Earth. Environ. Sci. pp. 659-671.<br />
Fogg GE, Thake B (1987). Algal culture and phytoplankton ecology (3 rd<br />
edition), the University of Wisconsin press.<br />
Foy RH, Gibson CE (1993). The influence of irradiance photoperiod<br />
and temperature on thegrowth kinetics of three planktonic diatims.<br />
E. J. Phycol. 28: 203-212.<br />
Hawkins PR, Runngar MTC, Gackson ARB (1985). Several<br />
hepatotoxicity caused by the tropical, cyanobacterium<br />
Cylindrospermopsis raciborskii. Dept. Bot. James Cook University,<br />
Queensland 4811, Australia.<br />
Ibrahim ZH (1993). Photosynthesis: Botanic Physiology, Tehran<br />
University Publication. 4: p. 690.<br />
Ibrahim ZH (1995). Metabolism: Botanic Physiology, Tehran University<br />
Publication. 3: p. 514.<br />
Kotai J (1972).Instruction for preparation of modified nutrient solution<br />
Z8 for algae. Publication B-Norwegian institute for water research,<br />
Blindern, Oslo. 5: 11-69.<br />
Litchman E (2003). photosynthetic and growth responses of three<br />
freshwater algae to phosphorus limitation and day length,<br />
Limnological Research. Centre, EAWAG, kastanienbaum,<br />
Switzerland. 48: 2141-2148.<br />
Moisander PH, McClinton E, Paerl, HW (2002). Salinity effects on<br />
growth, photosynthetic parameters, and nitrogenase activity in<br />
estuarine planktonic cynobacteia. microb. Ecol. 43: 432-442.<br />
Rhee GY (1980). Continuous culture in phytoplankton ecology. in<br />
Droop MR, Janasch HW (Eds). Adv. Aquat. Microbiol. 2: 151-203.<br />
Shafik M, Herodek S, Presing M, Voros L (2001). Factors effecting<br />
growth and cell composition of cyanoprokaryote Cylindrospermopsis<br />
raciborskii. Algological Studies, 103: 75-93.<br />
Smith GJ, Zammerman RC, Alberte R (1992). Molecular and<br />
physiological responses of diatoms to variable levels of Irradiance<br />
and nitrogen availability growth of costatumin simulated up welling<br />
conditions., limnol. Oceanogr. 37(5): 989-107.<br />
Tang EPY, Vincent WF (2000). Effects of daylength and temperature<br />
on the growth and photosynthesis of an Arctic Cyanobacterium,<br />
Schizothrix calcicola (Oscillatoriaceae), J. Phycol. 35: 263-272.<br />
Thompson PA, Hee-mock OH, Ree GY (1994).Storage of phosphorus<br />
in nitrogen-fixing Anabaena flos-quae (Cyanophyceae). J. Phycol.<br />
30: 267-273.<br />
Wilson K, Mark SM, Baker P (1999). Molecular characterization of the<br />
toxic Cyanobacterium Cylindrospermopsis raciborskii and Design of<br />
a Species-Specific PCR. The Cooperative Research center for<br />
Water Quality and Treatment, Australian Water Quality Center. SA<br />
Water Corporation, Australia.<br />
Zakaria A, Al-Shehri MAM (2004). Cyanobacteria and their toxins in<br />
treated-water storage reservoirs in Abha city, Saudi Arabia.Dept.<br />
Biol. Sci. Faculty Sci. King Khalid University, Saudi Arabia.
African Journal of Biotechnology Vol. 10(72), pp. 16209-16218, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2027<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Uptake of cadmium <strong>from</strong> hydroponic solutions by<br />
willows (Salix spp.) seedlings<br />
Yongqing Liu 1,2 , Guang-Cai Chen 2 *, Jianfeng Zhang 2 , Xiang Shi 2 and Renmin Wang 1 *<br />
1 College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, Zhejiang, China.<br />
2 Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Fuyang 311400, Zhejiang, China.<br />
Accepted 12 October, 2011<br />
Willow (Salix sp.) has large biomass production and high resistance to environmental stress. As an<br />
important multipurpose tree species in afforestation, it has been proved to be effective in the uptake<br />
and accumulation of metals <strong>from</strong> contaminated waters and soils. Suliu172 (Salix × jiangsuensis 'J172'),<br />
Hanliu (Salix matsudana), Weishanhu (Salix integra 'Weishanhu') and Yizhibi (S. integra 'Yizhibi') were<br />
chosen as model plants to evaluate their potential for uptake of cadmium <strong>from</strong> hydroponic culture and<br />
relative uptake mechanism. Cadmium uptake showed a linear increase in the short time course, and a<br />
nonlinear and slow increase in the long time course. After one week cultivation, cadmium accumulation<br />
in different parts of willows generally followed the order of root > stem > leaf. Cadmium influx in willow<br />
roots increased with the increase of cadmium concentration in hydroponic solutions. A modified<br />
Michaelis-Menten equation was employed to describe the concentration-dependent kinetics of cadmium<br />
uptake through the roots. Cadmium influx could be resolved into linear and saturable components<br />
under concentration–dependent kinetics. The saturable component followed Michaelis–Menten kinetics,<br />
which indicated that cadmium uptake across the plasma membrane was transporter–mediated. The<br />
uptake capacity (Vmax/Km) jointly decided by the Vmax and Km followed descending order of Hanliu ><br />
Weishanhu ≈ Yizhibi > Suliu172, indicating that their inherent potential of cadmium uptake reduced in<br />
turn. Low temperature and metabolic inhibitor inhibited the apparent uptake of cadmium in willow. Both<br />
active absorption and passive absorption occurred in the cadmium uptake by willow roots.<br />
Key words: Cadmium, willow, uptake kinetics.<br />
INTRODUCTION<br />
With the rapid development of mining, smelting, electroplating<br />
industries and agricultural activities such as the<br />
application of fertilizers and pesticides, cadmium pollution<br />
has become a severe and growing problem of concern<br />
(Taylor, 1997; Waalkes, 2000). Due to its harmful effects,<br />
the World Health Organization (WHO) has set a<br />
maximum limit concentration of 0.003 mg/L for cadmium<br />
in drinking water (WHO, 2008). Cadmium is a toxic metal<br />
without any known physiological function in plants and<br />
can be transferred efficiently <strong>from</strong> soil to plants. Cadmium<br />
in plant disrupts antioxidant enzyme system and causes<br />
metabolite modifications (Zhao, 2011; Zoghlami et al.,<br />
2011). Moreover, special consideration should be paid<br />
*Corresponding author. E-mail: guangcaichen@sohu.com. Tel:<br />
+86 571 63105079. Fax: +86-571-63341304.<br />
to cadmium pollution in water-soil-plant systems because<br />
of its high mobility and low toxic concentrations in<br />
organisms (Moreno et al., 2000). Cadmium may pose a<br />
risk to human and animal health due to the transfer of a<br />
high level of cadmium <strong>from</strong> agricultural soils or aquatic<br />
system to the human food chain (Jackson and Alloway,<br />
1992). Therefore, cadmium is one of the most important<br />
metals to be considered in terms of food-chain<br />
contamination.<br />
Phytoremediation is a promising approach for in situ<br />
cleanup of contaminated sites. However, choosing a<br />
plant species that can remove metal ions <strong>from</strong><br />
contaminated soil or water depends on three variables in<br />
the practice: plant growth, biomass and metal levels<br />
(Williams, 2002). Willow is an important multipurpose tree<br />
species in afforestation, which shows high resistance to<br />
salt and alkali, drought and water logging stress, and can<br />
grow well in all kinds of waters and soils. Willow has large
16210 Afr. J. Biotechnol.<br />
biomass production and is not directly associated with the<br />
food chain, which qualifies it for removing the soil<br />
pollutants gradually through short-rotation cultivation and<br />
harvesting periodically (Jaconette et al., 2005). Willow<br />
has remarkable capacity to concentrate elements including<br />
toxic heavy metals (Greger and Landberg, 1999;<br />
Dickinson and Pulford, 2005), especially cadmium<br />
(Berndes et al., 2004; Meers et al., 2007). Willow also<br />
has deep root system compared to grasses which can act<br />
as biological filter. These traits make it a potential ideal<br />
candidate for phytoremediation of cadmium contaminated<br />
waters and soils. Dickinson and Pulford, (2005) also<br />
reported that willow is a hyperaccumulator, and extracting<br />
cadmium with willow is an effective and low-cost<br />
phytoremediation method. Hence, it is necessary to<br />
understand the cadmium accumulation mechanism in<br />
order to assess the potential.<br />
Many researchers have focus on growth performance<br />
and cadmium uptake by willow adopting soil culture or<br />
field experiments, while kinetics of cadmium uptake by<br />
willow are rarely investigated. Willow’s cadmium uptake<br />
characteristics can be assessed rapidly <strong>using</strong> hydroponics<br />
or nutrient solutions culture (Watson et al., 2003).<br />
Furthermore, willow has high resistance to water logging<br />
stress, a primary evaluation of its phytoremediation ability<br />
towards water pollution by cadmium. The objective of this<br />
study was to examine whether willow is able to<br />
accumulate cadmium <strong>from</strong> hydroponic solutions. Hence,<br />
accumulation and uptake kinetics of cadmium by<br />
Suliu172 (Salix × jiangsuensis 'J172'), Hanliu (Salix<br />
matsudana), Weishanhu (Salix integra 'Weishanhu') and<br />
Yizhibi (S. integra 'Yizhibi') were investigated. The roles<br />
of bivalent cations, cation channel inhibitor (La and Cs),<br />
low temperature and metabolic inhibitor in the uptake of<br />
cadmium by Yizhibi and Suliu172 were also studied.<br />
MATERIALS AND METHODS<br />
Plant culture and pre-treatments<br />
Four species of willows, Suliu172 (Salix × jiangsuensis 'J172'),<br />
Hanliu (S. matsudana), Weishanhu (S.alix integra 'Weishanhu') and<br />
Yizhibi (S. integra 'Yizhibi'), were collected <strong>from</strong> a nursery in<br />
Hangzhou, Zhejiang Province, China. Culture vessel was a 40 × 20<br />
× 15 cm plastic box. One year old willow branches collected <strong>from</strong><br />
the nursery were cut into about 10 cm length, then uniform and<br />
healthy cuttings were selected and cultivated in the basal nutrient<br />
solution containing (mg/L): KNO3, 510; Ca(NO3)2, 820;<br />
MgSO4·7H2O, 490; KH2PO4, 136; FeSO4, 0.6; H3BO3, 2.86;<br />
MnCl2·4H2O, 1.81; ZnSO4·7H2O, 0.22; (NH4)Mo7O24, 0.45; EDTA,<br />
0.744; CuSO4·5H2O, 0.08. The nutrient solution was aerated<br />
continuously and renewed every seven days. Nutrient solution pH<br />
was adjusted daily to 5.8 with 0.1 mol/L NaOH or HCl. Plants were<br />
grown under glasshouse conditions with natural light, day/night<br />
temperature of 26/20°C and day/night humidity of 70/85%. After four<br />
weeks of cultivation, the heights of willows seedlings were 0.8 to 1.5<br />
m high depending on different species, which were the applicable<br />
size for this study.<br />
Willow plants with uniform size for each species were selected<br />
and rinsed in deionized water, and then treated with a pre-treatment<br />
solution containing 2 mmol/L MES-TRIS (pH 5.8) and 0.5 mmol/L<br />
CaCl2 (Lasat et al., 1996). After 12 h pre-treatment, the plants were<br />
used for different experiments as subsequently described. All the<br />
experiments were carried out in vessels filled with an uptake<br />
solution identical to the pre-treatment solution. Cadmium was<br />
added as CdCl2·2.5H2O into the uptake solution 24 h before each<br />
experiment and stirred to ensure complete mixing. Before uptake<br />
experiment, 1 ml of uptake solution was collected and cadmium<br />
content was measured.<br />
Time-course dynamics of cadmium uptake and accumulation<br />
Willow roots were immersed in 400 ml uptake solution containing 2<br />
mmol/L MES-TRIS (pH 5.8), 0.5 mmol/L CaCl2, and 10 μM/L CdCl2,<br />
at each time interval (0 to 90 min for short term, and 2 to 72 h for<br />
long term time course experiments, respectively), willow was<br />
harvested and desorbed in ice-cold desorption solutions (2<br />
mmol/LMES-TRIS, and 5 mmol/L CaCl2, pH 5.8) for 15 min in order<br />
to remove most of the cadmium adsorbed on cell walls of roots<br />
(Lasat et al., 1996). After desorption, the plants were separated<br />
roots <strong>from</strong> shoots, the roots and shoots were oven-dried at 65°C for<br />
72 h, and weighed. Dried plant materials were ground <strong>using</strong> a mill.<br />
Plant materials were digested with HNO3/HClO4 (87/13, v/v) and the<br />
total concentrations of cadmium were determined <strong>using</strong> flame or<br />
graphite atomic absorption spectrometry (SOLAAR–M6, Thermo<br />
Fisher Scientific). For the long-term experiments, uptake solution<br />
was replaced every 8 h to keep the concentrations of cadmium in<br />
the uptake solutions unchanged. All treatments were performed in<br />
three replicates with two willow plants in each pot.<br />
Cadmium accumulation in roots, stems and leaves<br />
Four plants each were planted in 10 L plastic box containing 10 L<br />
solutions with low concentration (2 μmol/L CdCl2) and high<br />
concentration (100 μmol/L CdCl2) of cadmium for one week. The<br />
uptake solutions were replaced every two days. All treatments were<br />
performed in three replicates with four willow plants in each 10 L<br />
plastic box. After one week growth, willows were harvested and<br />
desorbed for 15 min, separated into roots, stems and leaves, and<br />
then oven-dried at 65°C for 72 h. Dried plant materials were ground<br />
and digested, and cadmium concentrations were determined <strong>using</strong><br />
flame or graphite atomic absorption spectrometry.<br />
Concentration-dependent kinetics of cadmium uptake<br />
Willow was transferred to hydroponic pots containing 400 ml of<br />
uptake solution. Ten different concentrations of cadmium (0.25, 0.5,<br />
1, 2, 5, 10, 15, 30, 50 and 100 μmol/L) were used to study the influx<br />
kinetics of cadmium, and each treatment was replicated three times<br />
and each replicate had one pot with two willow plants. After 60 min<br />
of uptake, the plants were quickly rinsed with the pretreatment<br />
solution, and then desorbed in ice-cold desorption solutions (2<br />
mmol/LMES-TRIS, and 5 mmol/L CaCl2, pH 5.8) for 15 min. The<br />
plants were separated into roots and shoots, blotted dry with paper<br />
tissue, and dried at 65°C for 72 h. Cadmium concentrations were<br />
determined as previously described.<br />
Effects of Zn, Mg, Mn, Fe, Cu, La and Cs on cadmium influx<br />
To investigate the effects of metal cations and cation channel<br />
inhibitors on cadmium uptake, the experiment was conducted <strong>using</strong><br />
Suliu172 and Yizhibi as model plants. The uptake solutions<br />
containing (μmol/L) 10 CdCl2, 10 CdCl2 +10 ZnCl2, 10 CdCl2 + 10<br />
MgCl2, 10 CdCl2 + 10 MnCl2, 10 CdCl2 + 10 FeCl2, 10 CdCl2 + 10
CuCl2 and 10 CdCl2 + 50 LaCl3, and 10 CdCl2 + 50 CsCl,<br />
respectively, were used. After 4 h of uptake, the willow plant roots<br />
were desorbed as previously described and then the roots and<br />
shoots were separated, oven-dried at 65°C for 72 h, and weighed<br />
for the determination of cadmium. All experiments were in three<br />
replicates for each treatment and each replicate had one pot with<br />
two willow plants.<br />
Effects of low temperature or metabolic inhibitors on cadmium<br />
uptake<br />
Plants were cultured in the uptake solution containing 2 mmol/L<br />
MES-TRIS (pH 5.8), 0.5 mmol/L CaCl2, and 10 mol/L CdCl2 for<br />
different treatments: control, 2,4-dinitrophenol (DNP) (100 mol/L),<br />
and 2°C. For the 2°C treatment, plants were transferred to ice-cold<br />
pre-treatment solution for 30 min prior to the uptake, and then the<br />
uptake containers were placed in an ice bath and shaded <strong>from</strong> light.<br />
At each time interval (0.5, 1, 2, 4, 8, 16 and 24 h), water loss<br />
caused by transpiration was measured by weighing and<br />
compensated by addition of deionized water. A 2.0 ml aliquot of the<br />
uptake solution was taken out <strong>from</strong> each pot for the determination<br />
of cadmium concentrations, and 2.0 ml of deionized water was then<br />
added to each pot. Total amounts of cadmium removed by<br />
sampling of the uptake solution were < 2% of the initial amounts of<br />
cadmium in each pot. After 24 h of treatment, plants were rinsed,<br />
separated into roots and shoots, blotted dry with tissue paper, then<br />
oven-dried and weighed. Cumulative uptake of cadmium by willows<br />
for each treatment was calculated <strong>from</strong> total cumulative depletion of<br />
cadmium in the uptake solution. All treatments were performed in<br />
three replicates with two willow plants in each pot.<br />
Statistical analysis<br />
All statistical analyses (ANOVA and LSD test for mean<br />
comparisons) were conducted with SPSS 16.0. Differences at p <<br />
0.05 were considered significant. Independent-samples T-tests<br />
were adopted to compare the metal cations treatments with control.<br />
RESULTS AND DISCUSSION<br />
Time–course dynamics of cadmium uptake and<br />
accumulation<br />
The uptake time is one of the most important factors<br />
affecting the uptake of heavy metals by plants. Uptake<br />
solutions of 10 μmol/L cadmium were chosen to study the<br />
short-term and long-term cadmium influx for four willow<br />
species, as willow could retain normal growth under the<br />
concentration of cadmium at 10 μmol/L in solution. The<br />
short- and long-term uptake periods were defined as 5 to<br />
90 min and 2 to 72 h, respectively (Figures 1 and 2).<br />
Figure 1 shows that the influx of cadmium in roots of<br />
willow was more or less linear within 90 min. The<br />
observation that linear, time-dependent cadmium<br />
accumulation intersected the y-axis above the origin in<br />
four willow species indicated that quite an amount of<br />
cadmium was not completely removed <strong>from</strong> roots with the<br />
desorption regime used in these experiments (Lu et al.,<br />
2008). The slope of Suliu172 with the value of 0.006<br />
μmol/g root dry weight/min was the lowest among the<br />
Liu et al. 16211<br />
four cultivars. The slope k values of Hanliu, Yizhibi and<br />
Weishanhu showed no significant differences, which<br />
implied that the influx rates of the three willow species<br />
were almost alike during the short-term period within 90<br />
min. Moreover, after 90 min uptake, the cadmium<br />
concentration in the roots of Hanliu, Yizhibi and<br />
Weishanhu exhibited similar value, about 1.6 μmol/g root<br />
dry weight (DW), while Suliu172 was the lowest with the<br />
value of 1.1 μmol/g root dry weight.<br />
Furthermore, Figure 2 shows that the cadmium uptake<br />
gradually increased with increasing uptake time of 2 to 72<br />
h. After 72 h of uptake, the four willow species showed a<br />
significant difference in the cadmium uptake and<br />
accumulation (Figure 2). Also, after 72 h uptake of<br />
cadmium, the total cadmium accumulated in Hanliu was<br />
the highest (9.3 μmol/g root DW). The total cadmium<br />
accumulated in Suliu172 and Weishanhu were found to<br />
be 6.4 and 6.1 μmol/g root DW, respectively; and the total<br />
cadmium accumulated in Yizhibi was the lowest (5.2<br />
μmol/g root DW). The uptake rate became slower for all<br />
species at about 4 h for Hanliu and Weishanhu, while at<br />
about 8 h for Yizhibi and Suliu172. After the slower<br />
uptake rate period, they however returned to a high<br />
uptake rate.<br />
Cadmium accumulation in roots, stems and leaves<br />
The results of cadmium accumulation in willow roots,<br />
stems and leaves are given in Table 1. Cadmium content<br />
in different parts generally followed the order of root ><br />
stem > leaf. The result suggests that cadmium was<br />
mainly accumulated in willow roots. Cadmium content in<br />
roots showed a descending order of Hanliu > Suliu172 ><br />
Yizhibi > Weishanhu, which varied <strong>from</strong> 1.011 to 1.310<br />
μmol/g (2 μmol/L) and <strong>from</strong> 4.535 to 5.432 μmol/g (100<br />
μmol/L). Cadmium content in stems were not significantly<br />
different among the four willow species at solution of<br />
cadmium concentration of 2 μmol/L, while Suliu172 was<br />
significantly higher than Hanliu, Weishanhu and Yizhibi at<br />
100 μmol/L. Cadmium content in willow leaves of<br />
Suliu172 and Yizhibi were significantly higher than<br />
Weishanhu and Hanliu at 2 and 100 μmol/L.<br />
Willows have been shown to be promising for cadmium<br />
phytoextraction. Utmazian et al. (2007) reported that the<br />
cadmium concentrations in leaves varied between 11.9<br />
and 315 mg/kg (0.156 and 2.802 μmol/g), and the<br />
corresponding cadmium concentrations in roots between<br />
237 and 2610 mg/kg (2.108 and 23.219 μmol/g) among<br />
20 willow clones when they were exposed in 4.45 μmol/L<br />
cadmium solutions for four weeks. Cosio et al. (2006)<br />
reported that cadmium content were 39 mg/kg (0.347<br />
μmol/g) in leaves and 313 mg/kg (2.784 μmol/g) in roots<br />
at 3 μmol/L nutrient, which increased to 260 mg/kg (2.313<br />
μmol/g) in leaves and 798 mg/kg (7.099 μmol/g) in roots<br />
at 100 μmol/L for S. viminalis cultivated within six weeks<br />
in uptake solutions. Compared to the aforementioned
16212 Afr. J. Biotechnol.<br />
Total Cd influx(μmol g root DW -1 )<br />
Total Cd influx(μmol g root DW -1 )<br />
2.0<br />
1.8<br />
1.6<br />
1.4<br />
1.2<br />
1.0<br />
0.8<br />
0.6<br />
0.4<br />
0.2<br />
0.0<br />
0 20 40 60 80 100<br />
2.0<br />
1.8<br />
1.6<br />
1.4<br />
1.2<br />
1.0<br />
0.8<br />
0.6<br />
0.4<br />
0.2<br />
C<br />
A<br />
Time(min)<br />
0.0<br />
0 20 40 60 80 100<br />
Time(min)<br />
R=0.986<br />
k=0.012<br />
R=0.975<br />
k=0.014<br />
Total Cd influx(μmol g root DW -1 )<br />
Total Cd influx(μmol g root DW -1 )<br />
2.0<br />
1.8<br />
1.6<br />
1.4<br />
1.2<br />
1.0<br />
0.8<br />
0.6<br />
0.4<br />
0.2<br />
0.0<br />
0 20 40 60 80<br />
2.0<br />
1.8<br />
1.6<br />
1.4<br />
1.2<br />
1.0<br />
0.8<br />
0.6<br />
0.4<br />
0.2<br />
D<br />
B<br />
Time(min)<br />
R=0.997<br />
k=0.006<br />
0.0<br />
0 20 40 60 80<br />
Time(min)<br />
Figure 1. Short-term (5-90 min) cadmium influx of Yizhibi (A), Suliu172 (B), Hanliu (C) and Weishanhu (D). Data points and error bars<br />
represent means and SE, respectively. Error bars do not extend outside some symbols. DW, dry weight.<br />
results, cadmium accumulations of the four species in<br />
this experiment were relatively lower in general, which<br />
can be attributed to the shorter uptake time and different<br />
willow species. The variability in both cadmium accumulation<br />
and tolerance specificity exists between willow<br />
species (Hakmaoui et al., 2006; Utmazian et al., 2007).<br />
Concentration–dependent kinetics of cadmium<br />
uptake<br />
Figure 3 shows that the concentration-dependent<br />
cadmium influx kinetics of four willow species was<br />
characterized by smooth, non-saturating curves. The<br />
experimental curves could be graphically resolved into<br />
saturable and linear components by a modified Michaelis-<br />
Menten kinetics model:<br />
V = Vmax[C] / (Km + [C]) + k[C]<br />
Where, Vmax is the maximum influx rate of plant root cells,<br />
reflecting the inherent potential of uptake by plant roots<br />
(higher Vmax value indicates a higher inherent potential);<br />
Km is the characteristic constant which shows the<br />
relationship between plant cells and the elements<br />
R=0.990<br />
k=0.014<br />
absorption; a small Km indicates high affinity. The linear<br />
component represents cell-wall-bound cadmium that<br />
remained after desorption procedure. The saturable<br />
component of uptake probably indicates carrier-mediated<br />
transport across the root cell plasma membranes. Similar<br />
concentration-dependent kinetics has been reported for<br />
Zn (Lasat et al., 1996; Cohen et al., 1998; Hart et al.,<br />
1998; Lombi et al., 2001).<br />
Analysis of the kinetic constants for cadmium uptake<br />
indicated that influx characteristics were different (Table<br />
2). The Vmax values of the four willow species varied<br />
between 2.31 to 11.67 μmol/g DW/h and followed the<br />
order of Hanliu > Weishanhu > Yizhibi > Suliu172, which<br />
indicated that their inherent potential of cadmium uptake<br />
reduced in turn. Uptake capacity of Hanliu was about four<br />
times that of Suliu172, and about two times that of<br />
Weishanhu and Yizhibi, while the uptake capacity of<br />
Weishanhu and Yizhibi's was similar. The Km value of the<br />
four willow species varied between 27.03 to 79.04<br />
μmol/L; the Km values of the four willow species at the<br />
same order of magnitude mean similar affinity.<br />
It is generally recognized that the uptake capacity of<br />
plants for ions <strong>from</strong> soils is also affected by the surface<br />
area and morphology of roots, rhizosphere pH, root<br />
exudates and other factors (Jones et al., 1996;
Total Cd influx(μmol g root DW -1 )<br />
Total Cd influx(μmol g root DW -1 )<br />
11<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
0<br />
0 10 20 30 40 50 60 70 80<br />
11<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
A<br />
C<br />
Time (h)<br />
Time(h)<br />
0<br />
0 10 20 30 40 50 60 70 80<br />
Time (h) Time(h)<br />
Time (h)<br />
Total Cd influx(μmol g root DW -1 )<br />
Total Cd influx(μmol g root DW -1 )<br />
11<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
Liu et al. 16213<br />
0<br />
0 10 20 30 40 50 60 70<br />
11<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
B<br />
D<br />
Time (h)<br />
Ti me( h)<br />
0<br />
0 10 20 30 40 50 60 70<br />
Time(h)<br />
Figure 2. Long-term (2-72 h) cadmium influx of Yizhibi (A), Suliu172 (B), Hanliu (C) and Weishanhu (D). Data points and error bars repres ent<br />
means and SE, respectively. Error bars do not extend outside some symbols. DW, dry weight.<br />
Table 1. Cadmium accumulation (μmol/g) in roots, stems and leaves of the four willow species.<br />
Treatment Plant part Hanliu Weishanhu Yizhibi Suliu172<br />
Cadmium content<br />
(2 μmol/L)<br />
Cadmium content<br />
(100 μmol/L)<br />
Root 1.310 ± 0.034 a 1.011 ± 0.043 c 1.123 ± 0.004 b 1.127 ± 0.009 b<br />
Stem 0.016 ± 0.001 a 0.015 ± 0.000 ab 0.014 ± 0.000 b 0.016 ± 0.000 a<br />
Leaf 0.010 ± 0.000 b 0.012 ± 0.000 b 0.017 ± 0.001 a 0.016 ± 0.000 a<br />
Root 5.432 ± 0.105 a 4.535 ± 0.132 c 4.768 ± 0.159 bc 5.142 ± 0.203 ab<br />
Stem 0.799 ± 0.028 b 0.860 ± 0.020 b 0.846 ± 0.021 b 0.972 ± 0.015 a<br />
Leaf 0.019 ± 0.001 b 0.020 ± 0.000 b 0.026 ± 0.000 a 0.027 ± 0.001 a<br />
Different letters indicate significant differences between the means with P < 0.05 (mean ± SE).<br />
Krishnamurti et al., 1997). The accumulation of mineral<br />
elements in plants is not only related to the uptake ability<br />
of plant roots, but also affected by the transfer efficiency<br />
of mineral elements in plants (Clemens. 2006). The<br />
uptake capacity is jointly decided by the Vmax and Km,<br />
hence the Vmax/Km represents the absorption capacity of<br />
willow better. The Vmax/Km values (Table 2) indicated that<br />
the cadmium uptake capacity of willow followed Hanliu ><br />
Yizhibi > Weishanhu > Suliu172. The slopes of the linear<br />
components of Weishanhu and Yizhibi were also similar,<br />
but higher than that of Suliu172, while the slopes of the<br />
linear components of Hanliu were the lowest (Table 2).
16214 Afr. J. Biotechnol.<br />
Cd influx rate(μmol g root DW -1 h -1 )<br />
Cd influx rate(μmol g root DW -1 h -1 )<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
0<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
0<br />
0 20 40 60 80 100<br />
C<br />
A<br />
Cd concentration(μmolL -1 )<br />
0 20 40 60 80 100<br />
Cd concentration(μmolL -1 )<br />
Cd influx rate(μmol g root DW -1 h -1 )<br />
Cd influx rate(μmol g root DW -1 h -1 )<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
0<br />
10<br />
9<br />
8<br />
7<br />
6<br />
5<br />
4<br />
3<br />
2<br />
1<br />
0<br />
B<br />
0 20 40 60 80 10<br />
D<br />
Cd concentration(μmolL -1 )<br />
0 20 40 60 80 10<br />
Cd concentration(μmolL -1 )<br />
Figure 3. Concentration-dependent cadmium influx kinetics in roots of Yizhibi (A), Suliu172 (B), Hanliu (C) and Weishanhu (D). Linear (dotted<br />
line) and saturable (open circles) components were derived <strong>from</strong> experimental data (filled circles) by mathematically resolving these curves<br />
<strong>using</strong> Origin 7.5. Data points and error bars represent means and SE, respectively. Error bars do not extend outside some symbols. DW, Dry<br />
weight.<br />
Table 2. Kinetic parameters for root cadmium influx of the four willow cultivars.<br />
Willow cultivar Vmax Km Vmax/Km k R 2<br />
Yizhibi 5.09 53.09 0.096 0.055 0.998<br />
Suliu172 2.31 27.03 0.085 0.039 0.998<br />
Hanliu 11.67 79.04 0.147 0.001 0.998<br />
Weishanhu 6.36 66.83 0.095 0.051 0.998<br />
R 2 , coefficient determination.<br />
Therefore, we could conclude that Hanliu’s cell wall had<br />
a relatively strong cadmium binding capacity, while<br />
Weishanhu and Yizhibi had similar but relatively lower<br />
capacity. The cadmium uptake ability of willows <strong>from</strong><br />
hydroponic solutions depends on different willow species,<br />
size of willow seedlings and environmental conditions.<br />
Suliu172 is an interspecific hybrid and expresses well;<br />
fast-growing. Hanliu shows high resistance to salt and<br />
alkali drought but its water logging tolerance is not good.<br />
Yizhibi and Weishanhu are cultivars of S. integra and<br />
prefer adequate illumination. Particular physiological<br />
characteristics of willow species resulted in different<br />
cadmium uptake ability. The four weeks cultivation of<br />
willow seedlings partly reflected cadmium uptake ability<br />
of the four willow species.<br />
As the first barrier of metal ions across membrane into<br />
the cytoplasm, cell wall plays an important role in the<br />
process of resistance to metal ion toxicity (Nishzono,<br />
1987). Cell level reduces metal ion toxicity of plant roots<br />
in two ways: restriction of the metal <strong>from</strong> crossing the<br />
plasma membrane and detoxification of metal ions within<br />
the cell (Macfie et al., 2000; Hall, 2002). In other words,<br />
root uptake of divalent cations typically exhibits two<br />
phases: apoplastic binding and symplastic uptake (Hart<br />
et al., 1998; Zhao et al., 2002). To analyze cadmium<br />
influx into the symplast, apoplastic binding to reactive<br />
apoplastic sites of root cells must be taken into<br />
consideration and minimized by the desorption steps.<br />
According to Zhao et al. (2002), however, complete<br />
removal of apoplastically bound cadmium by desorption,
- 1<br />
-<br />
1<br />
Cd influx (µmolg root DW -1<br />
3.5<br />
3.0<br />
2.5<br />
2.0<br />
1.5<br />
1.0<br />
0.5<br />
0.0<br />
A<br />
**<br />
**<br />
CK Zn Mg Mn Fe Cu La Cs<br />
*<br />
Cd influx (µmolg root DW -1<br />
-<br />
1 1<br />
3.5<br />
3.0<br />
2.5<br />
2.0<br />
1.5<br />
1.0<br />
0.5<br />
0.0<br />
B<br />
CK Zn Mg Mn Fe Cu La Cs<br />
Figure 4. Effects of ZnCl2, MgCl2, MnCl2, FeCl2, CuCl2, LaCl3 and CsCl on cadmium uptake by the two cultivars<br />
of willow, Yizhibi (A), and Suliu172 (B). Error bars represent SE. Means marked with * indicate significant<br />
difference between control and treatments at P
16216 Afr. J. Biotechnol.<br />
Cd influx(μmol g root DW -1 )<br />
0.5<br />
0.4<br />
0.3<br />
0.2<br />
0.1<br />
0.0<br />
0 5 10 15 20 25<br />
Time(h)<br />
ice-cold<br />
DNP<br />
control<br />
Figure 5. Cumulative uptake of cadmium by Yizhibi with treatments of control<br />
(triangles), ice-cold (squares), and+100 mol/L DNP (circles), as determined <strong>from</strong> the<br />
depletion of cadmium in the uptake solution. Data points and error bars represent<br />
means and SE, respectively. Error bars do not extend outside some symbols. DW, dry<br />
weight.<br />
suggesting that cadmium uptake by willow was probably<br />
regulated by Ca transporters or channels in root cell<br />
plasma membranes. For K ion channel inhibitor Cs,<br />
however, no significant inhibition of willow cadmium<br />
uptake was observed.<br />
Effects of low temperature or metabolic inhibitors on<br />
cadmium uptake<br />
Figure 5 exhibits the results of cadmium uptake of Yizhibi<br />
under low temperature and metabolic inhibitors (2, 4-<br />
DNP). Both treatments inhibited cadmium uptake of<br />
Yizhibi, and the inhibition effect of low temperature was<br />
more significant than that of DNP's. After 24 h of<br />
treatment at low temperature, cadmium uptake decreesed<br />
by 23% compared to that of the control, while<br />
metabolism inhibitor only decreased the cadmium influx<br />
by 6% compared with the control. At cold treatment, the<br />
process of cadmium uptake by willow had two phases:<br />
within 0 to 8 h, the cadmium uptake increased linearly<br />
with increasing uptake time; when the treatment time was<br />
longer than 8 h, the uptake process reached a saturation<br />
state. When the metabolic inhibitor, 2, 4-DNP, was<br />
supplied in the solution, the uptake rate gradually<br />
reduced until it leveled off after 16 h. The results<br />
observed here suggest that 2, 4-DNP not only inhibited<br />
the cadmium absorption, but also postponed the time of<br />
uptake rate to be saturated.<br />
Active symplastic translocation would be inhibited when<br />
roots are treated under cold condition or under the<br />
presence of metabolic inhibitors. Temperature had a<br />
close relationship with uptake process regulated by<br />
metabolism. At an appropriate growth temperature, all<br />
kinds of physiological metabolisms ran normally, while<br />
under low temperature, plant's metabolism slowed down<br />
and enzyme activity decreased, then plant growth was<br />
almost at a standstill, which had a negative influence on<br />
the cadmium active uptake. Through studying the impact<br />
of low temperature on cadmium uptake of Sedum alfredii,<br />
Lu et al. (2009) discovered that uptake of cadmium was<br />
significantly inhibited by low temperature treatment (4°C)<br />
in hyperaccumulating ecotype plants. In living cells, DNP<br />
acts as a proton ionophore, an agent that can shuttle<br />
protons (hydrogen ions) across biological membranes. It<br />
defeats the proton gradient across mitochondria and<br />
chloroplast membranes, collapsing the proton motive<br />
force that the cell uses to produce most of its ATP; hence,<br />
instead of producing ATP, the energy of the proton<br />
gradient is lost as heat. Sequentially, it restrains active<br />
absorption, and because the passive absorption of plants<br />
does not need energy, metabolic inhibitors have no<br />
impact on passive absorption. Figure 5 shows that the<br />
cadmium absorption of willow had the participation of
active transport. So, we could infer that active absorption<br />
took part in cadmium uptake by willow roots.<br />
Passive transport is the diffusion of substances across<br />
a membrane. This is a spontaneous process and cellular<br />
energy is neither expended nor related to metabolism.<br />
However, active absorption process depends on the<br />
energy that is produced by respiration, and has<br />
connection with metabolic activities (Wolterbeek et al.,<br />
1988; Lu et al., 2009). Without removal of apoplastically<br />
bound cadmium by the desorption steps, cumulative<br />
uptake of cadmium by willows were calculated <strong>from</strong> total<br />
cumulative depletion of cadmium in the uptake solution in<br />
this experiment. Results reveal that cadmium uptake was<br />
only inhibited by 23% at low temperature treatment, while<br />
metabolism inhibitor only decreased the cadmium uptake<br />
influx by 6%. This illustrated two problems: first, active<br />
transport was an important way for cadmium absorption of<br />
willow, which was in accordance with conclusion of<br />
concentration-dependent kinetics experiment; secondly,<br />
root cell wall had bound a large number of cadmium, thus<br />
implying that the negative groups of cell wall had<br />
restricted cadmium ions by precipitation, adsorption and<br />
complexation in the process of passive absorption.<br />
Hence, the passive absorption was another important<br />
way to absorb cadmium for willow.<br />
Conclusion<br />
Cadmium accumulation by the four willow species<br />
increased when uptake time and initial cadmium<br />
concentration was increased. After one week cultivation,<br />
cadmium accumulation in different parts of willows<br />
generally followed the order of root > stem > leaf. Under<br />
hydroponics conditions, concentration-dependent cadmium<br />
influx could be resolved into linear and saturable<br />
components. The saturable component followed<br />
Michaelis-Menten kinetics, which indicated that cadmium<br />
uptake across the plasma membrane was transportermediated.<br />
In contrast, Hanliu had the highest cadmium<br />
uptake capacity, Weishanhu and Yizhibi had medium,<br />
while Suliu172 had the lowest. More also, time course<br />
dynamic results revealed that cadmium accumulation<br />
linearly increased during a short time course, but<br />
increased with prolong uptake time and became<br />
nonlinear, while a slow absorption rate phase were<br />
observed during a long time course.<br />
In addition, Zn and Cu decreased the cadmium uptake<br />
of Yizhibi significantly, while other cations had no<br />
significant effect. However, the cadmium influx into roots<br />
of Yizhibi was significantly suppressed by Ca channel<br />
inhibitor La, implying that Ca transporters or channels<br />
were responsible for the cadmium uptake of willow.<br />
Results also indicate that K ion channel inhibitor Cs had<br />
no obvious inhibition effect on the cadmium uptake of<br />
willow. Low temperature and metabolic inhibitor inhibited<br />
the apparent uptake of cadmium in willow via root<br />
cadmium active transport. Both active absorption and<br />
Liu et al. 16217<br />
passive absorption took part in the cadmium uptake by<br />
willow roots.<br />
ACKNOWLEDGEMENTS<br />
This work was supported by the Research Institute of<br />
Subtropical Forestry, Chinese Academy of Forestry (RISF<br />
6803) and Jiangsu Provincial Key Scientific and<br />
Technological Project (BE2009603 and BE2008636). We<br />
sincerely thank Professor Xiao–Quan SHAN, State Key<br />
Laboratory of Environmental Chemistry and<br />
Ecotoxicology, Research Center for Eco-Environmental<br />
Sciences, Chinese Academy of Sciences, for his<br />
comments on this paper.<br />
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Zhao FJ, Jiang RF, Dunham SJ, McGrath SP (2006). Cadmium uptake,<br />
translocation and tolerance in the hyperaccumulator Arabidopsis<br />
halleri. New Phytol. 172: 646-654.<br />
Zhao Y (2011). Cadmium accumulation and antioxidative defenses in<br />
leaves of Triticum aestivum L. and Zea mays L. Afr. J. Biotechnol.<br />
10(15): 2936-2943,<br />
Zoghlami LB, Djebali W, Abbes Z, Hediji H, Maucourt M, Moing A,<br />
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lycopersicum roots and leaves under cadmium stress. Afr. J.<br />
Biotechnol. 10(4): 567-579.
African Journal of Biotechnology Vol. 10(72), pp. 16219-16227, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2269<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Relationship between abscisic acid (ABA)<br />
concentration and some physiological traits in two<br />
wheat cultivars differing in post-anthesis droughtresistance<br />
Saeed Saeedipour 1 * and Foad Moradi 2<br />
1 Department of Agronomy, Shoushtar Branch, Islamic Azad University, Shoushtar, Iran.<br />
2 Agriculture Biotechnology Research Institute, Karaj, Iran.<br />
Accepted 6 October, 2011<br />
This work investigated the effects of endogenous abscisic acid (ABA) and physiologic parameters<br />
related to yield in two wheat cultivars (Triticum aestivum L.), Marvdasht and Zagros (sensitive and<br />
tolerant to terminal season drought, respectively) grown in pots under well watered and water-stressed<br />
starting <strong>from</strong> anthesis until maturity. All physiological parameters were affected by drought stress.<br />
Results show that water deficits enhanced the senescence by accelerating loss of leaf chlorophyll and<br />
soluble proteins and the loss was more in Marvdasht than Zagros. The net CO2 assimilation rate (PN) in<br />
flag leaves during water deficit displayed a strict correlation with the drought sensitivity of the<br />
genotypes and showed an early reduction in Marvdasht. Water stress resulted in a marked increase just<br />
in the ABA content of the drought-sensitive that led to reduced transport of sucrose into the grains and<br />
lowered the starch synthesis ability of grains, whereas, sucrose uptake and conversion by grains was<br />
stimulated by low ABA concentrations in Zagros. The effect of drought on grain yield was primarily due<br />
to the significant reduction in grain weight, particularly in drought-sensitive. The results indicate that<br />
grain filling processes under water restriction are limited by low substrate availability and reduced<br />
synthesis capacity of the sink. These results raised the possibility that water stress-induced elevated<br />
levels of endogenous ABA contribute to reduced grain growth.<br />
Key words: Abscisic acid, chlorophyll, flag leaves, grain yield, soluble proteins, soluble sugar, starch, wheat<br />
(Triticum aestivum L.).<br />
INTRODUCTION<br />
Reports on drought-induced reduction in seed yield of the<br />
crop are highly variable due to differences in the timing<br />
and intensity of the stress imposed and the genotypes<br />
used (Ramirez-Vallejo and Kelly, 1998). Drought stress<br />
decreases photosynthetic rate, thereby decreasing the<br />
amount of assimilates available for export to the sink<br />
organs (Kim et al., 2000). Plants grown under drought<br />
condition have a lower stomatal conductance in order to<br />
*Corresponding author. E-mail: saeeds79@gmail.com.<br />
Abbreviations: ABA, Abscisic acid; DAA, days after-anthesis;<br />
HI, harvest index; WW, well-watered; gs, stomatal conductance.<br />
conserve water. Consequently, CO2 fixation is reduced<br />
and photosynthetic rate decreases, resulting in less<br />
assimilate production for growth and yield of plants.<br />
Severe drought stress also inhibits the photosynthesis of<br />
plants by ca<strong>using</strong> changes in chlorophyll content, by<br />
affecting chlorophyll components and by damaging the<br />
photosynthetic apparatus (IturbeOrmaetxe et al., 1998).<br />
Drought can also affect carbohydrate metabolism in<br />
plant reproductive organs (Liu et al., 2004). For example,<br />
Setter et al. (2001) found higher or at least similar levels<br />
of sucrose in maize ovaries between drought-stressed<br />
and well watered controls. These results imply that in<br />
addition to assimilate availability per se, the capacity for<br />
utilizing them in the reproductive structures may also be<br />
affected under drought stress. Thus, drought-induced
16220 Afr. J. Biotechnol.<br />
changes in carbohydrate status and metabolism in crop<br />
reproductive structures are crucial for successful fruit set.<br />
In addition to photosynthate supply, decrease in water<br />
potential and higher abscisic acid (ABA) accumulation in<br />
the reproductive structure of plants subjected to drought<br />
may also contribute to the loss of fruit or seed set (Liu et<br />
al., 2004).<br />
ABA also promoted dry matter accumulation in several<br />
organs and its level was strongly correlated with the<br />
growth rates of both fruits and seeds (Wang et al., 1998).<br />
Isogenic lines of wheat containing high levels of<br />
endogenous ABA appear to be better at osmoregulation<br />
and exhibit better growth and higher yields under water<br />
stress (Quarrie et al., 1999). This suggests that an<br />
appropriate level of ABA will be necessary for plants to<br />
grow successfully under stress conditions (Spollen et al.,<br />
2000).<br />
Although, it has been widely speculated that ABA may<br />
be causally related to growth inhibition (Dodd and Davies,<br />
2005).<br />
In addition to the physiological and biochemical<br />
responses of plants to water stress, the information on<br />
the molecular mechanisms of drought stress adaptation<br />
could be useful for the genetic improvement of droughtresistant<br />
crops/genotypes. Among the stress induced<br />
proteins identified, are those implicated in the<br />
biosynthesis of osmolytes (Ishitani et al., 1995), in the<br />
uptake and compartmentation of ions (Lisse et al., 1996),<br />
in hydroxyl-radical scavenging (Ingram and Bartels,<br />
1996) and protection of cellular structure (Neslihan-<br />
Ozturk et al., 2002). Proteins that show significant down<br />
regulation under drought stress were observed for<br />
photosynthesis-related function (Neslihan-Ozturk et al.,<br />
2002). Changes in protein patterns induced due to<br />
drought play a pivotal role in the adaptive response of<br />
plants to the stress (Riccardi et al., 1998). In line with<br />
these findings, drought stress initiated at different growth<br />
stages may induce quantitative and qualitative changes<br />
in wheat leaf proteins.<br />
The objective of this study was to investigate the<br />
differential effect of drought stress on seed ABA content<br />
and some physiological parameters and yield in two<br />
wheat (Triticum aestivum L.) genotypes differing in<br />
degree of drought resistance.<br />
MATERIALS AND METHODS<br />
Experimental procedure and design<br />
Based on preliminary experiments (Saeidi et al., 2006), two<br />
contrasting winter wheat cultivars (Triticum aestivum L.) Marvdasht<br />
and Zagros (drought susceptible and tolerant during grain filling,<br />
respectively were used in pot culture experiments during the<br />
growing season <strong>from</strong> 2009 to 2010 in the greenhouse of<br />
Agricultural Biotechnology Research Institute of Iran (48°20 N;<br />
31°41 E; 20 m above sea level). Pots with a diameter of 23 cm and<br />
height of 25 cm were each filled with 8 kg pot -1 sieved yellow drab<br />
soil mixed with 20 g pot -1 manure fertilizer and 3.3 g pot -1<br />
compound fertilizer (N:P:K = 9:8:8). The soil contained organic<br />
matter of 1.48%, total N of 0.12%, available N of 82.3 µg g -1 ,<br />
available P2O5 of 30.9 µg g -1 , available K2O of 126.7 µg g -1 . Drought<br />
stress was imposed by withholding the amount of water applied in<br />
order to keep the soil moisture level at about 50% of the field<br />
capacity (FC). For non-stressed (control) treatments, the soil<br />
moisture was maintained field capacity until the plants were<br />
harvested. Fifteen seeds per pot were initially sown and later<br />
thinned to five at the third-leaf stage. The pots were weighed daily<br />
and watered to restore the appropriate moisture by adding a<br />
calculated amount of water. The experiment was 2 x 2 (two cultivars<br />
and two water regimes) factorial design with four treatment. Each of<br />
the treatment had four replications with three sub-samples, in a<br />
complete randomized block design.<br />
Physiological measurements<br />
The net photosynthetic rate (PN), stomatal conductance (gs) were<br />
measured with a portable photosynthesis system LI-6400 (LI-COR,<br />
Lincoln, USA) on the flag leaves on 7, 10, 15, 22 and 31 days after<br />
anthesis. Photosynthetically active radiation (PAR) of 300 µmol m -2<br />
s -1 was provided at each measurement by the 6400-02 light source.<br />
The fully expanded flag leaves on the stated dates were<br />
homogenized in ice cold 100% (v/v %) acetone (1.5 ml for 250-mg<br />
sample) and extracted for 24 h. Samples were centrifuged at 5,000<br />
g for 15 min at 4°C. The pellet was extracted again with 80% (v/v<br />
%) acetone (1.5 ml for 250 mg sample) for 24 h. After centrifugation<br />
(5,000 g, 15 min, 4°C), the supernatants were collected. The<br />
chlorophyll composition was measured with a double-beam<br />
spectrophotometer <strong>using</strong> the method of Lichtenthaler and Wellburn<br />
(1983). This method involves measurement of the light absorbed in<br />
the plant extract at 646.8 and 663.2 nm. Six leaves were used for<br />
each treatment.<br />
Chemical analysis<br />
For seed sugar, starch analyses, protein and ABA content of the<br />
seed samples which obtained at 7, 15 and 31 days after the<br />
commencement of drought stress were dried at 80°C for 48 h.<br />
Sugars<br />
300 mg ground plant material was weighed into a 50 ml volumetric<br />
flask and 30 ml of double-demineralised water was added. The<br />
material was then extracted by incubating in a shaking water bath<br />
at 60°C for 30 min. The flask was quickly cooled on ice, and filled<br />
up to the mark with double-demineralised water followed by<br />
filtration with (blue-band) filter paper (Faltenfilter 5951/2, Scheicher<br />
and Schüll Co., Dassel, Germany). Sugars were determined by<br />
<strong>using</strong> enzymatic test kits and absorbances of the solutions were<br />
read at 340 nm.<br />
Starch<br />
Starch determination was performed following enzymatic assay<br />
procedure <strong>using</strong> the starch determination kit <strong>from</strong> Boehringer<br />
(Mannheim, Germany). Homogenised ground seed samples of 300<br />
mg were weighed into Erlenmeyer flasks, and 20 ml of<br />
dimethylsulfoxide and 5 ml HCl (8 mol l -1 ) were added. The sealed<br />
flask was then incubated for 30 min at 60°C in a shaking water<br />
bath. The sample solutions were cooled quickly to room<br />
temperature and approximately 50 ml water was added. The pH<br />
was adjusted to 4-5 with sodium hydroxide (5 M) under vigorous<br />
shaking. The solution was then transferred to a 100 ml volumetric<br />
flask, rinsed with water, filled up to the mark with water and filtered
Saeedipour and Moradi 16221<br />
Figure 1. Changes in chlorophyll a and b content in control, (A) and (C) and water stress treatments, (B) and (D)<br />
in flag leaves during grain filling in two wheat cultivars (drought Sensitive cv. Marvdasht and drought Tolerant cv.<br />
Zagros). Vertical bars represent ± SE of the mean (n=4) Data are means ± SE of three independent samples. SE<br />
bars are not shown where they are smaller than symbols.<br />
<strong>using</strong> Falten filter 5951/2 (Scheicher and Schüll Co., Dassel,<br />
Germany).<br />
Protein content determination<br />
Leaf samples were ground in liquid nitrogen and the powder was<br />
dissolved in 1 ml of 50 mM HEPES-NaOH buffer pH 7.6 containing<br />
3 mM DTT. After centrifugation for 10 min at 13000 g, the protein<br />
concentration was measured <strong>using</strong> the method Sedmak and<br />
Grossberg (1977), <strong>using</strong> BSA as standard protein. This allowed all<br />
enzymatic activities to be expressed relative to the soluble protein<br />
concentration.<br />
ABA<br />
Metabolite extraction <strong>from</strong> freeze-dried grains (second and third<br />
kernel <strong>from</strong> each spikelet) or flag leaf of two wheat genotypes was<br />
performed. Extracts were passed through a Sep Pak C18-cartridge.<br />
Methanol was removed under reduced pressure and the aqueous<br />
residue was partitioned three times against ethyl acetate at pH 3.0.<br />
The ethyl acetate of the combined organic fractions was removed<br />
under reduced pressure. The newly obtained residue was taken up<br />
in TBS-buffer (Tris buffered saline; 150 mmol L -1 NaCl 1 mmolL -1<br />
MgCl2 and 50 mmol L -1 Tris at pH 7.8) and subjected to an<br />
immunological ABA assay (ELISA) as described earlier (Mertens et<br />
al., 1985).<br />
RESULTS<br />
Chlorophyll content<br />
In the well water and drought stress plants, relevant<br />
differences were recorded in the leaves (Chl) throughout<br />
the experiment (Figure 1A and 1C). Chl a and b contents<br />
decreased steadily in response to water deficit treatment<br />
and a significant change were found in the Chl a and b<br />
contents at 31 DAA between treatments (Figure 1B and
16222 Afr. J. Biotechnol.<br />
Figure 1. Changes in chlorophyll a and b content in control, (A) and (C) and water stress treatments, (B)<br />
and (D) in flag leaves during grain filling in two wheat cultivars (drought Sensitive cv. Marvdasht and<br />
drought Tolerant cv. Zagros). Vertical bars represent ± SE of the mean (n=4) Data are means ± SE of<br />
three independent samples. SE bars are not shown where they are smaller than symbols.<br />
1D). Irrespective to water regime, the lower Chl levels<br />
were measured in flag leaves of the drought-sensitive<br />
Marvdasht during 7 to 22 DAA. Drought stress imposed<br />
at anthesis contrast to control treatment led to the<br />
senescence process started earlier in plants of both<br />
cultivars (Figure 1B and 1D).<br />
Photosynthetic performance<br />
The net CO2 assimilation rate (PN) of both cultivars under<br />
well-watered (WW) condition was significantly higher than<br />
under water stress and the difference between cultivars<br />
became more pronounced under stress condition (Figure<br />
2C and 2D). The PN of flag leaf in both cultivars under<br />
WW treatment exhibited a more moderate decline with a<br />
similar changing pattern in both cultivars, however,<br />
Marvdasht had lower values in PN nearly 9 contrast to 14<br />
μmol m -2 s -1 CO2 at the end of the experiment. At the<br />
beginning of water stress, imposing the PN reduced by 67<br />
and 50% in Marvdasht and Zagros compared with those<br />
of the control treatments, respectively. These reduction<br />
remain constant in drought-tolerant while dropped to 75%<br />
at the end of the experiment in drought-sensitive cultivar<br />
(Figure 2D). Similar to PN, values of gs in WW treatment<br />
were significantly higher than under water stress (Figure<br />
2A and 2B). Stomatal conductance (gs) under water<br />
withholding was significantly lower than the respective<br />
controls at all stages sampling and the differences kept<br />
remain with development. The water stress resulted in<br />
evident reduction in gs at early stage (7 DAA). A<br />
substantial reduction in gs of both cultivars during 7 DAA<br />
was followed by a further slight reduction till to end of<br />
experiment.<br />
Leaf protein contents<br />
The amounts of soluble proteins decreased within the<br />
period of after anthesis in both treatments (Figure 3A and
Saeedipour and Moradi 16223<br />
Figure 3. Changes in soluble proteins and net ABA content in control, (A) and (C) and water stress treatments, (B)<br />
and (D) in flag leaves during grain filling in two wheat cultivars (drought Sensitive cv. Marvdasht and drought<br />
Tolerant cv. Zagros). Vertical bars represent ± SE of the mean (n=4) Data are means ± SE of three independent<br />
samples.<br />
3B), although, considerable differences were detected<br />
between treatments, as substantial reduction occurred in<br />
both cultivars under water stress compared with the WW<br />
treatment. Irrespective of treatment, Zagros revealed<br />
higher soluble proteins content than Marvdasht throughout<br />
all stages sampling. Reduction in soluble proteins<br />
under water stress was more remarkable than well<br />
watered treatment <strong>from</strong> day 10 onwards in Marvdasht,<br />
since this difference was not evident until 31 DAA in<br />
Zagros (Figure 3B). Opposite to other physiological<br />
parameter mentioned, the leaf ABA contents increased<br />
by water stress imposed in both cultivars, however, the<br />
increment was more pronounced in drought-tolerant than<br />
sensitive one during 15 DAA (Figure 3D). In comparison,<br />
ABA levels under stress regime was significantly more<br />
than respective to controls at all stages except for day 31,<br />
and the differences reached to maximum value by day 15<br />
and then underwent a rapid reduction during 15 to 31<br />
DAA. In addition, an obvious differences in absolute ABA<br />
concentration was observed between cultivars under WW<br />
treatment and the ABA level was markedly more during<br />
20 DAA in drought-tolerant than drought-sensitive cultivar<br />
(Figure 3C).<br />
Seed yield and yield components<br />
In both genotypes, drought stress imposed at anthesis<br />
stage resulted in significant seed yield reduction (Table<br />
1). Drought stress that lasted for 31days resulted in 45.6<br />
and 8.2% seed yield reductions in Marvdasht and Zagros,<br />
respectively. The effect of drought on seed yield was<br />
primarily due to the significant reduction in grain weight<br />
per plant (Table 1). It is noteworthy that water stress led<br />
to 10.4% numbers of grains reductions in Marvdasht,<br />
whereas had no effect on Zagros grain number (Table 1).<br />
A similar changing pattern was found for aerial biomass<br />
in both cultivars. Generally, harvest index (HI) decreased<br />
under water stress condition, although, the reduction was<br />
more in drought-sensitive (37%) than to drought-tolerant
16224 Afr. J. Biotechnol.<br />
Table 1. Effect of different water treatment, well watered (control), withholding water (stress) <strong>from</strong> anthesis till to maturity on the final number<br />
of kernel per spike, kernel weight per spike, the thousand-kernel weight, aerial biomass of plant and harvest index in two wheat cultivars.<br />
Cultivar Water-deficit<br />
treatment<br />
Number of<br />
grains per ear<br />
Grain yield<br />
per ear (g)<br />
1000 grain dry<br />
mass (g)<br />
Aerial biomass (g<br />
plant -1 )<br />
Harvest<br />
Index (HI)<br />
Marvdasht WW 60.41 a 1.78 a 38.96 a 3.82 a 67.31 a<br />
WS 54.16 b 0.97 d 19.24c 2.59 b 42.33 c<br />
Zagros WW 48.37 c 1.43 b 33.44 b 2.51 b 64.76a<br />
WS 48.67bc 1.31 c 29.71b 2.62 b 56.81 b<br />
LSD (0.05)<br />
5.52 0.58 4.53 0.37 5.91<br />
Letters indicate statistical significance at p 0.05 within the same cultivar.<br />
(12%).<br />
Assimilate availability, starch synthesis and ABA<br />
accumulation<br />
Drought stress altered the sucrose concentration in the<br />
grains of the two wheat genotypes, as available sugar<br />
concentration was suppressed due to drought for<br />
Marvdasht but not for Zagros during 15 DAA (Figure 4B).<br />
The reduction in sucrose content of stressed grains<br />
became much pronounced (47% of control) at 15 DAA in<br />
drought-sensitive compared with those of the control<br />
whereas, a further slight elevation (3%) occurred during<br />
similar stage sampling in drought-tolerant compared with<br />
their respective controls (Figure 4B). Likewise, a rapid<br />
loss of sucrose began in stressed grains than in controls<br />
<strong>from</strong> day 15 onwards in Zagros and this event was<br />
simultaneous with mark starch accumulation during the<br />
same period (Figure 4B and 4D). A nearly linear pattern<br />
of starch accumulation was observed by stressed grains<br />
during all stage sampling in both cultivars (Figure 4D).<br />
However, a period of 16 days water stress (15 to 31<br />
DAA) caused a sharp enhanced in starch concentration<br />
per grain especially in drought-tolerant. A comparison<br />
between grain age under stress-watered conditions<br />
indicates a greater capacity (50 and 27%) of grains for<br />
starch synthesis at day 31 than at day 15 in Zagros and<br />
Marvdasht, respectively. A period of 8 days (7 to 15 DAA)<br />
water stress had no effect on the starch synthesis ability<br />
of the sink (Figure 4D). On a grain starch accumulation,<br />
differences between treatments were still not significant<br />
at day 15. However, at day 31 differences between<br />
treatments were apparent on this basis. The percentage<br />
conversion, as a proportion of total sucrose uptake, was<br />
considerably higher in stressed grains at day 31 in<br />
comparison with grains <strong>from</strong> control plants, implying that<br />
the conversion of sucrose taken up by the endosperm<br />
cells had been effectively raised by water stress.<br />
Under limited conditions, ABA content of both cultivars<br />
significantly enhanced in all stage sampling compared to<br />
their respective controls (Figures 4E and 4F). A pattern of<br />
grain ABA levels similar to that of control treatment was<br />
observed under stress conditions in both cultivars. The<br />
grain ABA content achieved a maximum value by day 15,<br />
and then undertakes a rapid reduction during the later<br />
stage of grain growth (15 to 31 DAA) (Figure 4F).<br />
Regardless of treatments; grain ABA concentration was<br />
more in drought-sensitive than drought-tolerant. In comparison,<br />
under water deficit, the grain ABA content in<br />
Marvdasht reached 1.8 fold of Zagros at the end of the<br />
experiment (Figure 4F). On the basis of our results, total<br />
sucrose conversion was stimulated by the lower ABA<br />
concentration in drought-tolerant in water stress<br />
treatment, but inhibited by higher ABA level in droughtsensitive;<br />
the higher ABA concentration in Marvdasht cv.<br />
caused the greater inhibition of sucrose conversion in<br />
grains (Figure 4B and 4F). Increase in Marvdasht grain<br />
ABA content caused a significant reduction in sucrose<br />
availability and starch accumulation when compared with<br />
their counterpart Zagros ABA concentration.<br />
DISCUSSION<br />
Varieties significantly differed in photosynthetic activities,<br />
and these differences could not only be expressed under<br />
the control condition but also became more obviously<br />
under water stress. In many experiments, it has been<br />
shown that photosynthesis decreases when gs decreases<br />
(example, Tenhunen et al., 1987; Nilsen and Orcutt,<br />
1996). Chaves and Oliviera (2004) concluded that gs only<br />
affect photosynthesis at severe drought stress. The<br />
decrease in photosynthesis in drought stressed plants<br />
can be attributed both to stomatal (stomatal closure) and<br />
non-stomatal (impairments of metabolic processes)<br />
factors. Under stress condition, Zagros showed higher<br />
photosynthesis and grain yield. At present, most<br />
researchers agree that the stomatal closure and the<br />
resulting CO2 deficit in the chloroplasts is the main cause<br />
of decreased photosynthesis under mild and moderate<br />
stresses (Flexas and Medrano, 2002). The study<br />
observation also showed that soluble proteins of the flag<br />
leaves declined with age in both cultivars under WW<br />
treatment, but water stress enhanced such a decline with<br />
a more extent in Marvdasht than Zagros, although,
Saeedipour and Moradi 16225<br />
Figure 4. Changes in sucrose, starch and ABA content in control, (A), (C) and (E) and water stress<br />
treatments, (B), and (D) and (F) in grains during grain filling in two wheat cultivars (drought Sensitive cv.<br />
Marvdasht and drought Tolerant cv. Zagros). Vertical bars represent ± SE of the mean (n=4) Data are means<br />
± SE of three independent samples.<br />
Marvdasht showed earlier reduction under stress<br />
treatment than Zagros cv (Figure 3). The changes in leaf<br />
protein corroborate with previous reports on the<br />
responses of plants to drought stress (Riccardi et al.,<br />
1998; Salekdeh et al., 2002).<br />
Irrespective to treatments, drought-tolerant showed a<br />
higher chlorophyll content during 7 to 22 DAA, and the<br />
differences between cultivars can only be expressed<br />
under well water treatment and not evident under stress<br />
condition for Chl a. Similar changing pattern was<br />
observed for Chl b, although, the differences between<br />
cultivars was distinct under the water deficit. Decreased<br />
or unchanged chlorophyll level during drought stress has<br />
been reported in other species, depending on the<br />
duration and severity of drought (Kpyoarissis et al.,<br />
1995). A decrease of total chlorophyll with drought stress<br />
implies a lowered capacity for light harvesting. Since the<br />
production of reactive oxygen species is mainly driven by<br />
excess energy absorption in the photosynthetic apparatus,<br />
this might be avoided by degrading the absorbing<br />
pigments (Herbinger et al., 2002). In addition, one must<br />
consider that the protective role of ABA over pigments<br />
may be related to stimulation of the nonphotochemical<br />
quenching imposed to increase the level of xanthophylls.<br />
Ivanov (1995) found that barley seedlings treated with<br />
ABA had markedly increased pigments levels, which play
16226 Afr. J. Biotechnol.<br />
an important role in maintaining the integrity of the<br />
photosynthetic membranes under situations of oxidative<br />
stress (Havaux, 1998; Munne´-Bosch and Alegre, 2002).<br />
In our experiments, the higher Zagros leaf ABA level<br />
promoted a greater concentration of chlorophylls and<br />
therefore yellowness was prevented. Consequently, ABA<br />
may promote (although indirectly) greater stability of the<br />
photosynthetic apparatus, allowing more photosynthesis<br />
and thus higher accumulation of dry matter in the<br />
harvested products (Thomas and Howarth, 2000).<br />
Varietal differences were found in terms of the level of<br />
sucrose available for metabolism in the grains under<br />
drought stress conditions (Figure 4B). In Marvdasht,<br />
drought initiated at early stage of grain filling (15 DAA)<br />
caused a marked reduction in seed sucrose concentration<br />
relative to the well-watered plants. On the<br />
contrary, seed sucrose concentrations for Zagros<br />
increased by about 3% as a consequence of the drought<br />
stress imposed during similar period. Sucrose metabolism<br />
is pivotal in seed development and is particularly<br />
susceptible to drought stress (Pinheiro et al., 2005). The<br />
decrease in seed sucrose concentration due to drought at<br />
all durations of stress in Marvdasht (Figure 4B), reflected<br />
the lower availability of the assimilate at source level. A<br />
direct relationship between sucrose availability and<br />
export rate at source level and the establishment of new<br />
sink organs has been shown for several crops (Setter et<br />
al., 2001; Liu et al., 2004). In line with these reports, we<br />
suppose that the higher decrease in sink size (number of<br />
endosperm cell) of the drought-sensitive genotype due to<br />
drought stress is partly attributed to reduced availability of<br />
the assimilate at source level (Ho, 1988).<br />
Although, a genotypic difference was evident for the<br />
length of the stress period at which the effects began to<br />
manifest, seed starch concentrations only for droughtsensitive<br />
wheat genotype was decreased under drought<br />
stress (Figure 4D). Drought induced decrease in seed<br />
starch accumulation was more consistent across the<br />
stress period considered for Marvdasht than for Zagros.<br />
In Marvdasht, drought stress at day 15 resulted in 39%<br />
less seed starch concentrations than the corresponding<br />
well-watered plants (Figure 4C and 4D). On the other<br />
hand, drought stress that lasted up to15 days did not<br />
affect seed starch accumulation of the drought-resistant<br />
genotype, Zagros. When the stress period was prolonged<br />
to 31 days, seed starch concentration of the genotype<br />
increased by ca. 28 and 100% relative to the WW<br />
treatment in drought-sensitive and drought-tolerant<br />
respectively (Figure 4D). In wheat endosperm, Jenner et<br />
al. (1991) found a relationship between the seed carbohydrates<br />
and the rate of storage starch accumulation was<br />
a function of the concentration of sucrose. Based on<br />
these relationships, it appears that shortage of assimilate<br />
(sucrose) could be one of the prime factors responsible<br />
for the reduced starch accumulation in the seeds of the<br />
drought-sensitive wheat genotype. On the basis of our<br />
previous study, the failure to set reproductive sinks under<br />
drought stress in Marvdasht addition to the decrease in<br />
sucrose concentration, attributed <strong>from</strong> the lower invertase<br />
activities in the reproductive structures. In the above<br />
context, we suppose that besides to sucrose availability,<br />
the capacity for utilizing the assimilate may have been<br />
differently affected in the two wheat genotypes under<br />
drought stress. The variation in sink may, therefore, partly<br />
explain the observed genotypic difference in the<br />
establishment and growth of reproductive structures<br />
under drought conditions. These results imply that apart<br />
<strong>from</strong> assimilate availability; drought stress may induce<br />
other factors that contribute to decreased seed starch<br />
synthesis. Limitations of sink activities due to the<br />
inhibition of the activities of key enzymes of sucrose<br />
metabolism, invertases and sucrose synthase (Weber et<br />
al., 2005), and starch synthesis (ADP-glucose pyro-phosphorylase<br />
and starch synthase) (Ho, 1988) have been<br />
cited as principal factors responsible for reduced starch<br />
synthesis under drought situations.<br />
As depicted in Figure 4, endogenous grain ABA levels<br />
increase with water stress in both genotypes. Relative to<br />
the corresponding WW treatments, drought stress<br />
increased sink grain ABA concentration of Marvdasht by<br />
ca. two-fold at early (7 DAA) and at late stage (31 DAA)<br />
of grain development compared with not evident<br />
differences for the drought-resistant genotype, Zagros<br />
(Figure 4F). We suppose that the differences in ABA<br />
accumulation due to drought relative to WW conditions<br />
(higher for Marvdasht compared with Zagros) may partly<br />
explain the differences found in grain abortion between<br />
the two wheat genotypes. Studies have shown that ABA<br />
accumulation in reproductive organs during early developmental<br />
inhibits cell division and subsequent abortion<br />
or failure to set seed (Wang et al., 1999).<br />
Overall, the results obtained <strong>from</strong> our study furnish<br />
valuable information regarding the relationship between<br />
ABA content and yield probably has an optimum ABA<br />
content which is likely to differ for each environment and<br />
crop. Below their optima, increases in ABA content might<br />
be reflected in higher yields, but too much ABA perhaps<br />
adversely affects grain filling and reduces yield (Quarrie,<br />
1991). The positive relationship between grain growth in<br />
vivo and grain ABA content is likely to be via the effect of<br />
ABA on stomatal aperture, enhancing water use<br />
efficiency (WUE) and leading to a better yield under field<br />
conditions. The negative response to ABA may reflect<br />
adverse effects on source activity (example, reducing<br />
current photosynthesis and accelerating senescence)<br />
and a decreased sink ability to attract and utilize available<br />
carbohydrates. Increased ABA levels under water stress<br />
conditions are likely to be above this optimum and thus<br />
negatively affect physiological processes including grain<br />
fill.<br />
Conclusion<br />
Drought stress significantly affected the growth and yield
of the two contrasting genotypes. The grain dry mass<br />
accumulation followed by numbers of grains per spike<br />
were the most affected yield components under drought<br />
stress. Compared with Marvdasht, Zagros had larger<br />
grain weight and higher harvest index under drought<br />
stress. Different grain sucrose concentration found<br />
between the contrasting watering regimes for both<br />
genotypes imply that sucrose availability as well as, the<br />
capacity for utilizing the assimilate affected under drought<br />
stress. The trend of seed starch accumulation of the<br />
genotypes due to the stress imposed maybe influenced<br />
by different grain ABA content. The decrease in seed<br />
starch accumulation of Marvdasht corresponded with<br />
marked increased in grain ABA level whereas the<br />
increased starch found for Zagros could be due to the<br />
stimulatory effect of appropriate sink ABA level activity<br />
factors accompany with sucrose availability.<br />
ACKNOWLEDGEMENT<br />
The corresponding author gratefully acknowledges the<br />
funding <strong>from</strong> the Islamic Azad University, Shoushtar<br />
branch through Grant.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16228-16235, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1432<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Impacts of geo-physical factors and human disturbance<br />
on composition and diversity of roadside vegetation: A<br />
case study <strong>from</strong> Xishuangbanna National Nature<br />
Reserve of Southwest China<br />
Dong Shikui*, Li Jinpeng, Li Xiaoyan, Liu Shiliang and Zhao Qinghe.<br />
School of Environment, Beijing Normal University, Beijing, 100875, China.<br />
Accepted 19 September, 2011<br />
We examined vegetation-disturbance-environment relationships in the Xiaomengyang Section of<br />
Xishuangbanna Nature Reserve (XNR) <strong>using</strong> multivariate analysis to understand the impacts of<br />
geo-physical factors and human disturbance on vegetation along the highway corridor. We found that<br />
native forests were the best habitat for protected/endangered species and native species. The exotic<br />
plants Eupatorium odoratum and Eupatorium adenophora were found primarily in secondary forests and<br />
their presence was positively associated with altitude and soil potassium concentrations. The<br />
distribution of two protected plants, Phoebe nanmu and Pometia tomentosa, was negatively associated<br />
with road disturbance. Species richness was correlated with environmental factors but not related to<br />
historical land use and road disturbance. Understanding the complex effects of geo-physical factors and<br />
anthropogenic disturbance is important for developing and implementing conservation strategies for the<br />
protection and restoration of biological diversity and the integrity of roadside ecosystems.<br />
Key words: Vegetation composition, species diversity, gradient analysis, environmental controls, road<br />
construction, nature reserve.<br />
INTRODUCTION<br />
With rapid economic development and population growth<br />
in China, conservation efforts and environmental quality of<br />
many protected areas of the nation are threatened by a<br />
variety of human activities (Yang and Li, 2006).<br />
Agricultural production, resource exploitation, recreational<br />
activities and infrastructure development must be<br />
reconciled with the preservation of areas of high scenic<br />
and biological conservation value (Gen, 2001; Duan, 2005;<br />
Huang and Hu, 2007). Highway infrastructure develop-<br />
ment presents a particularly challenging balance between<br />
conservation and development (Song, 2004; Su and Li,<br />
2005).<br />
The Simao-Xiaomengyang (Sixiao) Highway, China’s<br />
section of Kunming-Bangkok international road, was<br />
recently developed (constructed in 2001 and opened in<br />
*Corresponding author. E-mail: dongshikui@sina.com. Tel:<br />
86-10-58802029. Fax: 86-10-58800397.<br />
2005) to connect the undeveloped southwest frontier of<br />
China to the highly developed north China as well as to<br />
neighboring countries in Southeast and South Asia. This<br />
road was planned to cut through the core zone of the<br />
Xiaomengyang Section of Xishuangbanna Nature<br />
Reserve (XNR), one of hotspots for tropical biodiversity in<br />
China and the world (Yang et al., 2006). To meet the<br />
national priority of development, the natural reserve<br />
management authority, China’s Forest Ministry, desig-<br />
nated part of the core zone of XNR as an experimental<br />
zone to accommodate the development of the Sixiao<br />
Highway (Song et al., 2005).<br />
Although, there has been an intense debate between<br />
environmentalists and development planners as to the<br />
program impacts of the Sixiao Highway on species and<br />
habitats in this area, there is little available evidence to<br />
support the arguments of either side due to limited<br />
site-specific research in this region. One of the objectives<br />
of the present study was to better understand how<br />
highway construction has impacted vegetation in the
Table 1. Environmental conditions of the sampling transects.<br />
Shikui et al. 16229<br />
Transect number Plot number Latitude Longitude Altitude (m) Slope Aspects Soil types Land use types<br />
1 1-3 N22º06' E100°54' 748-760 10 SW loam-clay old fields<br />
2 4-8 N22º10' E100°53' 790-844 27 W loam native forest<br />
3 9-12 N22º10' E100°53' 760-774 15 NE loam native forest<br />
4 13-15 N22º09' E100°52' 849-859 50 SW loam secondary forest<br />
5 16, 17 N22°08' E100°53' 897-925 20 N loam native forest<br />
6 18-20 N22°02' E100°53' 811-842 26 NE loam-clay native forest<br />
7 21-23 N22°08' E100°53' 817-937 15 SE loam-clay old fields<br />
8 24, 25 N22°10' E100°52' 769-773 10 NW loam-clay native forest<br />
XNR.<br />
We quantified vegetation patterns along an 18.5 km<br />
length of the highway, and examined the changes in the<br />
species composition along disturbance gradients that ran<br />
perpendicular <strong>from</strong> the highway into less disturbed<br />
habitats of the reserve.<br />
A simple method was applied needed to analyze and<br />
visualize the relationship between many species and<br />
many environmental variables (Ter Braak, 1987).<br />
Canonical correspondence analysis (CCA), a multivariate<br />
method, can provide a means to structure the data by<br />
separating systematic variation <strong>from</strong> noise (Gauch, 1982).<br />
Another objective of this study was to testify the feasibility<br />
of <strong>using</strong> the CCA and related multivariate analysis as a<br />
tool to infer the species-disturbance-environment<br />
relationship along roadside habitats in the protected area<br />
of XNR of Southwest China.<br />
MATERIALS AND METHODS<br />
Site description<br />
The study site is located in Wild Elephant Valley (22°07′ to 22°23′N,<br />
100°36′ to 101°18′E, and 590 to 1600 m a.s.l) of Yunnan Province,<br />
a hilly area in the subtropical to tropical zone of southwest China.<br />
Wild Elephant Valley is the central area of the Xiaomengyang<br />
Section of XNR, established in the 1950s, one of the earliest nature<br />
reserves established in China. The study area covers an 18.5 km<br />
length and 1 km wide section along the Sixiao Highway, which cuts<br />
through the newly defined experimental zone of the XNR. The area<br />
has a subtropical continental climate with a dry and monsoonal wet<br />
season. The annual average temperature is 20.8°C and annual<br />
precipitation is 1193.7 mm with most of the rain occurring <strong>from</strong><br />
May to November. The soils are dominated by loam or loam-clay<br />
soils, which are fine textured, well drained, and have high organic<br />
matter content (Table 1). The seasonal rain forests are dominated<br />
by Antiaris toxicaria, Canarium album and Gironniera subaequalis,<br />
and are the target vegetation for protection in XNR as it was<br />
reported to be one of the most important ecosystems with the richest<br />
species diversity in the world (Wilson, 1988). The secondary forests<br />
and open fields exist along the roadside in some locations due to<br />
historical land use activities, including row-crop agriculture, rubber<br />
plantations, and selective and clear-cut timber harvests.<br />
Study design and treatment<br />
To assess the role of the various controls on the distribution and<br />
abundance of the vegetation in roadside habitats, we measured a<br />
suite of plot-level geo-physical factors and human disturbance<br />
factors at each site of the road. The geo-physical factors were<br />
classified into two types, that is, geographic location and soil<br />
characteristics. Geographic location data including longitude,<br />
latitude, altitude, slope and aspect, were recorded <strong>using</strong> a Garmin<br />
Global Position System (GPS) and compass. Soil characteristics<br />
data including soil type, moisture, pH, organic carbon content, total<br />
nitrogen, phosphorus and potassium concentration, were deter-<br />
mined <strong>using</strong> a Time Domain Reflectometry (TDR), pH meter and<br />
Elementar Vario analyzer (El Ltd., Germany), respectively. Two<br />
types of human disturbance, that is, past anthropogenic practices<br />
and recent road construction, were considered in the study. As the<br />
intensity and duration of past human disturbances were not well<br />
documented, the intensity of historical human practices (HHP) was<br />
expressed by the succession stage of the vegetation, that is,<br />
primary forests, secondary forests and old fields. The distance to the<br />
road (RD) was used as a measure of the disturbance associated<br />
with road construction as many studies have shown that disturbance<br />
to vegetation is correlated to the distance <strong>from</strong> the road (Parendes<br />
and Jones, 2000; Gelbard and Belnap, 2003; Flory and Clay, 2006).<br />
Field survey and data collection<br />
Field surveys were conducted in 2004 and 2005 during the middle of<br />
the dry season <strong>from</strong> November to January following the modified<br />
design <strong>from</strong> Flory and Clay (2006). Eight transects of 0.3 to 1.0 km<br />
in length and 20 m in width were located along the road by a<br />
distance determined by a random number table. Transects were at<br />
least 20 m apart and at least 50 m <strong>from</strong> forest openings such as<br />
creeks and fields. Transects were set perpendicular to the road and<br />
started at the edge of the vegetation along the road, which was<br />
either native or planted. The extent of the transect length was<br />
determined by the variation of vegetation structure. Along each<br />
transect, 10 10 m plots were arranged at 10, 50, 200, and 500 m<br />
<strong>from</strong> the road for a total of 25 plots (Table 1 and Figure 1). All plant<br />
species within each plot were identified and the species composition<br />
and numbers in each plot were quantified.<br />
Based on the data collected <strong>from</strong> the field survey, the species<br />
abundance and diversity were quantified. Species abundance was<br />
recorded as number of individuals of each plant. Species richness<br />
(Marglef index), diversity (Shannon-Weaver index) and evenness<br />
(Pielou index) were calculated following the formulas cited by Dong<br />
et al. (1997).<br />
Statistical analysis<br />
Canonical correspondence analysis (CCA) was used to identify the<br />
ecological relationships between the vegetation and the
16230 Afr. J. Biotechnol.<br />
Figure 1. Locations of sample sites and arrays of sampling plots.<br />
environment along the roadside. In order to assure objectivity of the<br />
gradient analysis, the species abundance data were used for<br />
ordination. This analysis was performed <strong>using</strong> Software for<br />
Canonical Community Ordination (Version 4.5) recently developed<br />
by Ter Braak and Smilauer (2002). Multiple regression models were<br />
used to investigate the relationship between geographic factors<br />
(longitude, latitude, altitude, aspect, and slope), soil factors (type,<br />
pH, organic matter content, and nitrogen, phosphorus, and<br />
potassium concentration), historical human practices reflected by<br />
different land types (primary forest, secondary forest and old fields),<br />
road factors (distance to the road) and plant species richness,<br />
diversity and evenness, to determine what factors were most closely<br />
associated with the variation in species diversity. All analyses were<br />
performed <strong>using</strong> SPSS 12.0 (Huang et al., 2005).<br />
RESULTS<br />
A total of 216 vascular plants, including 72 tree species,<br />
75 shrub species, 58 herbaceous species and 11 vine<br />
species, representing 136 genera and 35 families were
Table 2. Canonical coefficients and intraset correlation coefficients derived <strong>from</strong> the species abundance data.<br />
Shikui et al. 16231<br />
Axis 1 2 3 4<br />
Eigenvalues 0.807 0.760 0.723 0.680<br />
Cumulative percentage variance of species data 6.9 13.4 19.6 25.4<br />
Cumulative percentage variance of species-environment relation 9.7 18.8 27.5 35.6<br />
Environmental<br />
Canonical coefficients Intraset correlation coefficients<br />
variables Axis 1 Axis 2 Axis 3 Axis 4 Axis 1 Axis 2 Axis 3 Axis 4<br />
RD -0.74 1.20 -0.92 -1.33 -0.17 0.67 0.11 -0.11<br />
LOG 0.29 -0.63 0.78 0.17 0.31 0.045 0.076 0.074<br />
LAT 0.14 -0.81 1.18 1.01 -0.20 -0.16 0.0621 -0.022<br />
ALT -0.94 0.75 0.17 -0.65 -0.41 -0.22 0.31 0.30<br />
SLP 0.21 -0.18 -0.11 1.11 -0.41 -0.13 -0.29 0.44<br />
ASP 0.62 -0.33 -0.53 1.00 -0.11 0.42 -0.13 0.31<br />
ST -0.58 0.52 -0.0073 -1.01 -0.54 0.34 -0.41 0.3229<br />
SM 0.24 -0.88 1.40 0.23 -0.14 0.444 0.54 -0.076<br />
SpH 0.30 -0.18 -0.21 1.25 -0.07 0.34 0.22 -0.042<br />
SOC -0.46 0.53 0.36 -1.23 0.12 0.053 0.47 -0.20<br />
STN 0.17 -0.79 0.51 1.97 -0.31 0.32 -0.0060 0.30<br />
SP 0.0091 0.47 -0.24 -0.86 -0.26 0.36 0.14 0.23<br />
SK 0.93 -0.61 -0.49 0.85 0.57 0.027 0.17 -0.037<br />
HHP 0.32 -0.32 -0.12 1.13 -0.35 -0.13 0.33 -0.026<br />
The abbreviations of environmental variables are: LOG, longitude; LAT, latitude; ALT, altitude; SLP, slope degree; ASP, slope aspect; ST, soil type;<br />
SM, soil moisture; SpH, soil PH; SOC, soil organic carbon; STN, soil total nitrogen; SP, soil phosphorus; SK, soil potassium; LUT, Historical human<br />
practices; RD, distance to road.<br />
collected and identified <strong>from</strong> the 25 plots. None of the 216<br />
species occurred in all 25 plots. Among these species, 1<br />
cultivated plant, Cassia siamea, was recorded in 2 plots,<br />
and 2 exotic plants, Eupatorium odoratum and<br />
Eupatorium adenophora, were identified in 11 plots and 1<br />
plot, respectively. Several endangered and protected<br />
species were sampled including the following: Cycas<br />
siamensis, a Grade I species in List of Wild Plants of<br />
National Priority Protection in China (LWPNPPC, initiated<br />
in 1999) and grade II species in List of Chinese Rare and<br />
Endangered Plants for Protection (LCREPP, initiated in<br />
1984) was recorded in 4 plots; Magnolia henryi, a Grade II<br />
species in LWPNPPC and Grade II species in LCREPP<br />
was recorded in 1 plot; Terminalia myriocarpa, a Grade II<br />
species in LWPNPPC and Grade III species in LCREPP<br />
was recorded in 1 plot; Gmelina arborea, a Grade II<br />
species in LCREPP was recorded in 2 plots; Phoebe<br />
nanmu, a Grade II species in LCREPP was recorded in 2<br />
plots; Pometia tomentosa, another Grade II species in<br />
LCREPP was recorded in 3 plots; Paramichelia baillonii, a<br />
Grade III species in LCREPP was recorded in 1 plot;<br />
Lagerstroimia intermedia, another Grade III species in<br />
LCREPP was recorded in 1 plot.<br />
Ordination of the vegetation<br />
The sign and relative magnitudes of the canonical co-<br />
efficients and of the intraset correlations indicate the<br />
relative importance of each environmental factor in<br />
predicting the species composition along the ordination<br />
axes. The first four axes of the CCA ordination all had<br />
relatively high eigenvalues (Table 2); however, they only<br />
explained 25.4% of the total sample variance in the<br />
species data and 35.6% of the species-environment<br />
relationships. All four axes had similar explanatory power.<br />
Axis I was defined primarily by soil type and soil K con-<br />
centrations; the second by road construction disturbance;<br />
the third by soil organic carbon, soil moisture and human<br />
disturbance; and the fourth by slope, altitude and soil N<br />
concentrations.<br />
It is clear <strong>from</strong> Figure 2 that historical land use (HHP),<br />
road construction (RD), and soil phosphorus (SP) were<br />
the most influential environmental factors affecting the<br />
vegetation composition along the roadside habitats in<br />
XNR as indicated by the length of these vectors. Altitude,<br />
slope, aspect and soil K concentrations were positively<br />
correlated with HHP. Soil moisture soil organic carbon,<br />
soil nitrogen, slope aspect, and soil type were all<br />
positively correlated with distance to the road. Only<br />
longitude and soil pH were positively associated with soil<br />
phosphorus concentrations.<br />
The species Imperata cylindrica, Solanum xantho-<br />
carpum, Hevea brasiliensis and Schizonepeta tenuifolia<br />
and to a lesser extent Digitaria ternata clustered together<br />
in the old fields reflected by their closeness to sample
16232 Afr. J. Biotechnol.<br />
0.8<br />
ALT<br />
-0.6<br />
Sid sze Pue mon<br />
Aca pen 21 Age con<br />
Tre tom<br />
Tit div<br />
Tet dub Thl dub<br />
Abe man Lag int<br />
SP<br />
Cas sia LOG<br />
Fic rac<br />
Gyr cre<br />
SK<br />
Bro pap<br />
ST<br />
Eup coe<br />
Ter myr 15 22 4<br />
Eup odo 17 Den str<br />
SpH 23<br />
7<br />
13 8<br />
6<br />
Str fim 18 5 ASP Pho nan<br />
16<br />
24 20 11<br />
14<br />
25 19 9 Gme arb<br />
Mag Hen 12 Cyc sia<br />
SLP Par bai<br />
RD 10 Pom tom<br />
SM LAT<br />
LUT<br />
STN<br />
SOC<br />
Ste uli<br />
Ver pat<br />
Sta obl<br />
Ecl pro<br />
Cyn dac Ana sin<br />
Hyd nep<br />
-0.6 1.0<br />
Figure 2. CCA ordination diagram with plant species (△), sample quadrates (●and number 1-25) and environmental<br />
variables (arrows) on the basis of species presence; first axis is horizontal, second axis is vertical. To avoid the crowd of<br />
the diagram, we only present the species with positions far <strong>from</strong> center and some important species (protected, exotic and<br />
Figure 2. CCA ordination diagram with plant species (△), sample quadrates (●and number 1-<br />
25) cultivated and species) environmental in the diagram variables <strong>using</strong> the abbreviations (arrows) as on follows the buted basis as follows: of species Abe man=Abelmoschus presence; manihot, first axis is<br />
Aca pen=Acacia pennata, Age con=Ageratum conyzoides, Ana sin=Anaphalis sinica, Bro pap=Broussonetia papyrifera,<br />
Cas sia=Cassia siamea, Cyc sia=Cycas siamensis, Cyn dac=Cynodon dactylon, Den str=Dendrocalamus strictus, Ecl<br />
pro=Eclipta prostrate, Eup coe=Eupatorium coelestinum, Eup odo=Eupatorium odoratum, Fic rac=Ficus racemosn, Gme<br />
arb=Gmelina arborea, Gyr cre=Gyrmra crepidioides, Hyd nep=Hydrocotyle nepalensis, Mag hen=Magnolia henryi, Par<br />
bai=Paramichelia baillonii, Pho nan=Phoebe nanmu, Pom tom=Pometia tomentosa, Pue mon= Pueraria montana, Sid<br />
sze= Side szechuensis, Sta obl= Stachys oblongifolia, Ste uli=Stellaria uliginosa, Str fim=Strophioblachia fimbricalys, Ter<br />
myr=Terminalia myriocarpa, Tet dub= Tetrastigma dubinum, Thl dub=Thladiantha dubia, Tit div= Tithonia diversifolia, Tre<br />
horizontal, second axis is vertical. To avoid the crowd of the diagram, we only present the<br />
species with positions far <strong>from</strong> center and some important species (protected, exotic and<br />
cultivated species) in the diagram <strong>using</strong> the abbreviations as follows buted as follows: Abe<br />
man=Abelmoschus manihot, Aca pen=Acacia pennata, Age con=Ageratum conyzoides, Ana<br />
sin=Anaphalis tom= Trema tomentosa, sinica, Ver pat=Vernonia Bro pap=Broussonetia patula. The abbreviations papyrifera, of environmental variables Cas sia=Cassia are present in Table siamea, 2. Cyc<br />
sia=Cycas siamensis, Cyn dac=Cynodon dactylon, Den str=Dendrocalamus strictus, Ecl<br />
pro=Eclipta prostrate, Eup coe=Eupatorium coelestinum, Eup odo=Eupatorium odoratum,<br />
points 23 on the graph, and their distributions were clearly abundance insofar as these can be explained by the<br />
controlled Fic by rac=Ficus RD. The species racemosn, Hydrocotyle Gme nepalensis, arb=Gmelina environmental arborea, Gyr factors cre=Gyrmra measured in crepidioides, this study. Nearly Hyd all<br />
Eclipta prostrate, nep=Hydrocotyle Cynodon dactylon nepalensis, and Anaphalis Mag hen=Magnolia sinica, endangered henryi, or protected Par bai=Paramichelia species sampled in baillonii, this study<br />
Stachys oblongifolia and Vernonia patula were clearly were found in native forest habitat (sample points 6, 8, 11,<br />
Pho nan=Phoebe nanmu, Pom tom=Pometia tomentosa, Pue mon= Pueraria montana, Sid<br />
separated <strong>from</strong> the other species and tightly clustered 16, 18, 20, and 25), except for P. baillonii was found in<br />
near the sze= SP environmental Side szechuensis, vector indicated Sta obl= that SP Stachys had a oblongifolia, secondary forest Ste (sample uli=Stellaria site 14). The distribution uliginosa, pattern Str<br />
strong influence fim=Strophioblachia on controlling the fimbricalys, distribution Ter of these myr=Terminalia of endangered myriocarpa, or protected species Tet dub= along Tetrastigma<br />
the gradient of<br />
species. The two exotic species, E. odoratum and E. the distance to road shows that Phoebe nanmu and<br />
dubinum, Thl dub=Thladiantha dubia, Tit div= Tithonia diversifolia, Tre tom= Trema<br />
adenophora, were most abundant in secondary forests as Pometia tomentosa were abundant in the sites near the<br />
indicated tomentosa, by their closeness Ver pat=Vernonia to sample points patula. 14 and 15, The abbreviations roadside and the of rest environmental were abundant in variables the sites far are <strong>from</strong><br />
and were present influenced in Table positively 2. by HHP.<br />
the roadside. Two exotic species, E. odoratum and E.<br />
adenophora were more abundant in the plots of<br />
secondary forest, reflected by their closeness to sample<br />
Species abundance along environmental and points 14 and 15. The abundance of these two plants was<br />
disturbance gradients<br />
correlated positively with soil potassium and negatively<br />
with the distance to road. The cultivated species, C.<br />
The species points and sample points (plots) in Figure 3 siamea, was more abundant in the plot of old fields,<br />
jointly represent the dominant patterns of the species reflected by its location at the sample point 22. The<br />
2<br />
3<br />
1
1.0<br />
-0.8<br />
LUT<br />
SOC<br />
Imp cyl 23<br />
Sol xan<br />
Hev bra Sch ten<br />
RD<br />
Dig ter<br />
SN<br />
ST<br />
ASP<br />
SM<br />
25<br />
19<br />
Pho nan<br />
Hyp tri<br />
22 Jat cur<br />
Cas sia<br />
Mag Hen 24 Pom tom<br />
20<br />
16 9 SpH LOG<br />
Pho lan 6 5 10<br />
12<br />
17<br />
Gme arb 18 13 4<br />
Str fim<br />
7<br />
SLP<br />
SK Par bai Lag int<br />
LAT 14 11<br />
Eup odo Ter myr<br />
ALT<br />
15<br />
Eup coe 8<br />
Cyc sia<br />
SP<br />
Sta obl<br />
Ver pat<br />
-1.0 1.0<br />
3<br />
21<br />
2<br />
Shikui et al. 16233<br />
Hyd nep<br />
Ecl pro<br />
1<br />
Cyn dac<br />
Ana sin<br />
Figure 3. CCA ordination diagram with plant species (△), sample quadrates (●and number 1 to25) and environmental<br />
variables (arrows) on the basis of species abundance; first axis is horizontal, second axis is vertical. To avoid the crowd of the<br />
diagram, we only present the species with positions far <strong>from</strong> center and some important species (protected, exotic and<br />
cultivated species) in the diagram <strong>using</strong> the abbreviations as follows buted as follows: Ana sin=Anaphalis sinica, Cas<br />
sia=Cassia siamea, Cyc sia=Cycas siamensis, Cyn dac=Cynodon dactylon, Dig ter=Digitaria ternata, Ecl pro=Eclipta prostrate,<br />
Eup coe=Eupatorium coelestinum, Eup odo=Eupatorium odoratum, Gme arb=Gmelina arborea, Hey bra=Hevea brasiliensis,<br />
Hpy tri= Hypoestes triflora, Imp cyl=Imperata cylindrica, Jat cur= Jatropha curcas, Lag int=Lagerstroimia intermedia, Mag<br />
hen=Magnolia henryi, Par bai=Paramichelia baillonii, Pho lan=Phoebe lanceolata, Pho nan=Phoebe nanmu, Pom<br />
tom=Pometia tomentosa, Sch ten=Schizonepeta tenuifolia, Sol xan= Solanum xanthocarpum, Sta obl= Stachys oblongifolia,<br />
Str fim=Strophioblachia fimbricalys, Ter myr=Terminalia myriocarpa, Ver pat=Vernonia patula. The abbreviations of<br />
environmental variables are present in Table 2.<br />
abundance of this plant was positively associated with the<br />
distance to road, that is, closer to the road had more C.<br />
siamea.<br />
Relationship between plant diversity and<br />
environmental and disturbance factors<br />
It can be seen <strong>from</strong> Table 3 that species richness repre-<br />
sented by the Margalef index correlated negatively to<br />
longitude (p < 0.05) and slope aspect (p < 0.01), but<br />
positively to soil organic carbon (p < 0.05). There were no<br />
significant correlations between any of the measured<br />
environmental variables and species evenness as<br />
measured by the Pileou or species diversity estimated by<br />
the Shannon-Weaver index.<br />
DISCUSSION<br />
The present study examined the correlation between<br />
environmental factors, human disturbance and vegetation<br />
composition and plant diversity in different roadside<br />
habitats along international highway in a protected area,<br />
XNR in Southwestern China. Overall, the vegetation in the<br />
XNR has not been affected to a great extent by the<br />
construction of the road. Habitat types, geographic<br />
locations and soil factors were the key factors affecting<br />
the species vegetation compositions and plant diversity<br />
along the roadside habitats in XNR.
16234 Afr. J. Biotechnol.<br />
Table 3. Spearman correlations between species diversity and environmental variables.<br />
Environmental<br />
variable<br />
Margalef index<br />
Coefficient Sigificance<br />
Species diversity<br />
Shannon-Weaver index<br />
Coefficient Significance<br />
Pielou index<br />
Coefficient Significance<br />
RD 0.189 0.365 0.205 0. 326 0.03 0.886<br />
LOG -.399* 0.048 -0.028 0. 895 0.104 0.622<br />
LAT 0.197 0.346 -0.055 0. 796 -0.169 0.419<br />
ALT 0.092 0.66 -0.2 0. 338 -0.332 0.105<br />
SLP -0.043 0.837 0 1.00 -0.028 0.895<br />
ASP -.539** 0.01 -0.156 0.489 -0.08 0.722<br />
ST 0.033 0.876 0.011 0.958 -0.031 0.883<br />
SM 0.305 0.139 0.218 0.295 0.106 0.615<br />
SpH -0.187 0.371 -0.14 0.505 0.007 0.972<br />
SOC .456* 0.022 0.109 0.604 -0.095 0.651<br />
STN 0.382 0.06 0.083 0.692 -0.101 0.63<br />
SP -0.06 0.774 0.093 0.657 0.158 0.451<br />
SK 0.085 0.686 -0.091 0.665 -0.135 0.521<br />
HHP 0.244 0.241 -0.212 0.308 -0.321 0.118<br />
The abbreviations of variables are similar to Table 2; ** Correlation is significant at the 0.01 level (2-tailed); * Correlation is significant at the 0.05<br />
level (2-tailed).<br />
Species-sites relationship in CCA ordination diagram<br />
indicates that the habitat types strongly influenced the<br />
presence and abundance of key plant species. Native<br />
forest was the best habitat for most protected/endangered<br />
species and primitive species. This means that native<br />
forest should be the priority for roadside habitat protection<br />
in this area. Secondary forest, as habitats with high<br />
human interventions, may serve as source for invasion of<br />
exotic species into more pristine environments (Tyser and<br />
Worley, 1992; Hobbs, 2000). Higher light and bare soil<br />
exposure may have favored alien plant establishment<br />
(Parendes and Jones, 2000; Flory and Clay, 2006).This is<br />
why two alien plants, E. odoratum and E. adenophora<br />
were found abundant there. One protected species P.<br />
baillonii was also abundant in secondary forest.<br />
Restoration of secondary forest is necessary to facilitate<br />
the growth of protected species and to control the<br />
invasion of exotic species. Old fields was abounded<br />
rubber forest or farm land, on which C. siamea has been<br />
planted to form a highly appreciated fuelwood used by the<br />
local people due to quick regrowth of the branches of this<br />
plant. A better control of upperstorey timber cutting is<br />
required to maintain this land use type.<br />
Species-environment relationship in CCA ordination<br />
diagram indicates that altitude and soil potassium were<br />
most important factors affecting the presence of E.<br />
odoratum and E. adenophora and historical land use was<br />
one of the most influential factors that determines the<br />
abundance of these two alien plants. That is in agreement<br />
with other researchers’ reports that the distribution of alien<br />
species was highly related to land use patterns (Hobbs,<br />
2000; Sax and Brown, 2000) and our preliminary finding<br />
that E. adenophora (also named Ageratina adenophora)<br />
was more susceptible to total soil potassium (unpublished<br />
data). Better land use and reduced soil potassium may be<br />
the solutions to control the invasion of alien species. In<br />
present study, it was found that road disturbance played<br />
very important role in determining the distribution of two<br />
protected plants of P. nanmu and P. tomentosa. Higher<br />
abundance of these two protected species near roadside<br />
means that moderate disturbance derived <strong>from</strong> road<br />
construction and traffic may favor their survival and<br />
growth. This is a proof to support the view that the effects<br />
of roadwork on the vegetation and its environment were<br />
complex and sometimes positive (Forman and Alexander,<br />
1998).<br />
Although, previous researchers have noted the incre-<br />
mental effects of road developments (Forman and<br />
Alexander, 1998) and argued the loss of biological<br />
diversity (Southerland, 1995; Angold, 1997) and the<br />
fragmentation of natural habitats (Heilman et al., 2002;<br />
Spellerberg, 1998) resulted <strong>from</strong> road construction and<br />
traffic, the correlation analysis in this study showed that<br />
species richness was solely related significantly to some<br />
geographic and soil factors while not to land use and road<br />
disturbance. This may be mainly attributed to three<br />
reasons according to Sixiao Road Planning Report (Song<br />
et al., 2005; Zhuang, 2007): (1) the protective strategies<br />
including choosing the shortest route, evading key<br />
habitats and minimizing ecosystem damage were<br />
adopted during road planning period to reduce the<br />
potential negative effect of roadwork; (2) the construction<br />
projects of ecological protection including viaduct, and<br />
tunnels have been dramatically used during road<br />
construction to avoid the clearance of plant, fragmentation<br />
of habitat and alteration of hydrological flows and soil
condition; (3) the protective measures including enclosure<br />
of road system, bio-protection of slope and limitation of<br />
traffic were strictly implemented during road service<br />
period.<br />
The results of this study are important for several<br />
practical reasons. First, they identify the effects of<br />
environmental factors, land use and road disturbance, on<br />
the species composition and diversity along roadside<br />
habitats in the protected area of XNR. Hence, they are<br />
very meaningful for maintaining vegetation structure and<br />
distribution pattern in this protected area and other similar<br />
sites. Second, they reveal how key species (endangered<br />
species, exotic species and cultivated species) respond to<br />
environmental factors, land use and road disturbance. So,<br />
they give a good indication to better key species mana-<br />
gement (protect the endangered species, control exotic<br />
species and maintain cultivated species) and improve<br />
their environment. Third, they show the clear relationships<br />
between species, environment and sites (habitats).<br />
Therefore, they can provide a baseline to formulate the<br />
plans of roadside habitats protection or restoration.<br />
Indeed, the results appear to indicate understanding<br />
complex effects of environmental factors, land use and<br />
road disturbance is very important to develop and<br />
implement the strategies to protect or restore elements of<br />
biological diversity and integrity of roadside ecosystems.<br />
ACKNOWLEDGEMENTS<br />
This research is supported by National Natural Science<br />
Foundation of China projects (50939001) and (30870466).<br />
The authors wish to express great thanks to reviewers<br />
and editors for their time and efforts.<br />
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in natural preservation zone. Sichuan Forest Explor. Des. 7(2): 21-24<br />
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effects. Annu. Rev. Ecol. Syst. 29: 207-231.<br />
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to roads and stand age in eastern deciduous forests in <strong>India</strong>na, USA.<br />
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Heilman GE, Stritthold .Jr. JR, Slosser NC, Dellasala DA (2002). Forest<br />
fragmentation of the conterminous United States: assessing forest<br />
intactness through road density and spatial characteristics. Bioscience,<br />
52: 411-422.<br />
Hobbs RJ (2000). Land use changes and invasions. in Mooney HA,<br />
Hobbs RJ (eds.). Invasive species in a changing world. Island Press,<br />
Washington, D.C. pp. 385-421.<br />
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Huang T, Hu J (2007). Relationship between Construction of Nature<br />
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analysis. Beijing: People’s Posts and Telecommunications Publishing<br />
House.<br />
Parendes LA, Jones JA (2000). Role of light availability and dispersal in<br />
exotic plant invasion along roads and streams in the H. J. Andrews<br />
Experimental Forest, Oregon. Conserv. Biol. 14: 64-75.<br />
Sax DE, Brown JH (2000). The paradox of invasion. Global Ecol.<br />
Biogeogr. 9: 363-371.<br />
Song WX (2004). Influences of Expressway Construction and<br />
Environmental Protection of Natural Conservation Zone. J Henan U<br />
Sci Technol (Natural Science). 25(6): 58-61.<br />
Song FC, Tian WP, Zhao QQ, Fang R, Li GF (2005). Environment<br />
Impact and Engineering Measures for the Si-Xiao Expressway<br />
Construction in Tropical Rain Forest Area. J. Highway Transport Res.<br />
Dev. 22(9): 175-178.<br />
Southerland MT (1995). Conserving biological diversity in highway<br />
development projects. Environ. Prof. 17: 226-242.<br />
Spellerberg IF (1998). Ecological effects of roads and traffic: a literature<br />
review. Global Ecol. Biogeogr. Lett. 7: 317-333.<br />
Su FY, Li YK (2005). Highway Construction Influence to Natural<br />
Protection Area and Related Measures. Modern Transport Technol.<br />
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CanoDraw for windows user’s guide. Biometris, Wageningen<br />
University and Research Centre, Wageningen, the Netherlands.<br />
Tyser RW, Worley CA (1992). Alien flora in grassland adjacent to road<br />
and trail corridors in Glacier National Park, Montana (USA). Conserv.<br />
Biol. 6: 253-262.<br />
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Washington, D. C.<br />
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Establishment of Chinese Natural Reserve System. China Population,<br />
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11-16.
African Journal of Biotechnology Vol. 10(72), pp. 16236-16249, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1122<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Modeling spatial pattern of deforestation <strong>using</strong> GIS and<br />
logistic regression: A case study of northern Ilam<br />
forests, Ilam province, Iran<br />
Saleh Arekhi<br />
Department of Forest and Rangeland, University of Ilam, Ilam, Iran. E-mail:<br />
saleh148@yahoo.com Tel: 0098-918-843-0318. Fax: 0098-841-2227015.<br />
Accepted 25 July, 2011<br />
This study aimed to predict spatial distribution of deforestation and detects factors influencing forest<br />
degradation of Northern forests of Ilam province. For this purpose, effects of six factors including<br />
distance <strong>from</strong> road and settlement areas, forest fragmentation index, elevation, slope and distance <strong>from</strong><br />
the forest edge on the forest deforestation were studied. In order to evaluate the changes in forest,<br />
images related to TM1988, ETM + 2001 and ETM + 2007 were processed and classified. There are two<br />
classes as, forest and non-forest in order to assess deforestation factors. The logistic regression<br />
method is used for modeling and estimating the spatial distribution of deforestation. The results show<br />
that about 19,294 ha <strong>from</strong> forest areas are deforested in the 19 years. Modeling results also indicate that<br />
more deforestation occurred in the fragmented forest cover and in the areas of proximity to forest/non<br />
forest edge. Furthermore, slope and distance <strong>from</strong> road and settlement areas had negative<br />
relationships with deforestation rates. Meanwhile, deforestation rate is decreased with increase in<br />
elevation. Finally, a simple spatial model is presented that is able to predict the location of<br />
deforestation by <strong>using</strong> logistic regression. The validation was also tested <strong>using</strong> ROC approach which<br />
was found to be 0.96.<br />
Key words: Deforestation modeling, remote sensing, logistic regression, Zagros forests, Ilam province, Ilam.<br />
INTRODUCTION<br />
Three well-known global changes are increasing carbon<br />
dioxide in the atmosphere, alterations in the biochemistry<br />
of the global nitrogen cycle and continuing land-use/landcover<br />
change(LU/LC) (Vitousek, 1994), which generates<br />
many environmental consequences globally and locally,<br />
such as the release of greenhouse gases, the loss of<br />
biodiversity and the sedimentation of lakes and streams<br />
(Walker, 2000). In particular, it is recognized as the major<br />
driver of the loss of biodiversity and ecosystem services<br />
(Haines-Young, 2009). The effects of land-use changes<br />
on biodiversity may be greater than climate change, biotic<br />
exchange, and elevated carbon dioxide concentration at<br />
the global scale (Sala, 2000). Deforestation is known as<br />
one of the most important elements in LU/LC. Globally,<br />
deforestation has been occurring at an alarming rate of<br />
13 million hectares per year (FAO, 2005).<br />
The Mediterranean area is one of the most significantly<br />
altered hotspots on Earth (Myers et al., 2000). It has<br />
been intensively affected by human activity for millennia<br />
(Covas and Blondel, 1998; Lavorel et al., 1998; Blondel<br />
and Aronson, 1999; Vallejo et al., 2005). As a result, only<br />
4.7% of its primary vegetation has remained unaltered<br />
(Falcucci et al., 2007). Agricultural lands, evergreen<br />
woodlands and maquis habitats that dominate the<br />
Mediterranean basin are the result of anthropogenic<br />
disturbances over centuries or even millennia (Blondel<br />
and Aronson, 1995; Blondel, 2006).<br />
Although, Iran has 14.4 million hectares of forestlands,<br />
it is still not safeguarding its natural heritage properly. A<br />
report by the United Nations‟ Food and Agriculture<br />
Organization (FAO), does not present a hopeful scenario<br />
for the Iranian environment. As an example, it reports that<br />
11.5% of the country‟s northern forests have been<br />
destroyed beyond recognition (http://earthtrends.wri.org).<br />
Its high deforestation rate has placed Iran among the top<br />
ten Asia and Pacific countries that destroy forests, with<br />
economic losses estimated at 6,800 billion rials<br />
(http://earthtrends.wri.org).
The Zagros region is located in the west of Iran running<br />
<strong>from</strong> northwest to southeast. Total forest area is about<br />
5.2 million hectares. Population pressure has led to<br />
encroachments on the forestland, for agricultural and<br />
garden use, collection of fuel wood, mining, human settlements,<br />
grazing, utilization of branches and leaves of oak<br />
trees for feeding domestic animals, etc. People have<br />
been forced to be highly dependent on these degraded<br />
forests and so the forests have been reduced quantitatively<br />
and qualitatively. Since 1965, natural regeneration<br />
has been severely reduced while pests and diseases<br />
have increased (Fattahi, 2003).<br />
Amini et al. (2009) carried out a study on deforestation<br />
modeling and correlation between deforestation and<br />
physiographic parameters, manmade settlements and<br />
roads parameters in the Zagros forests (Armerdeh<br />
forests, Baneh, Iran) <strong>using</strong> remote sensing and geographic<br />
information system (GIS). The result of forest<br />
change detection <strong>using</strong> forest maps of 1955 and 2002<br />
showed that 4853 ha of the forest area have been<br />
reduced and 953 ha increased in this period. The Spearman<br />
correlation test and logistic regression model were<br />
used to investigate correlation between changed forests<br />
and the mentioned parameters. The result showed that<br />
there is an inverse relationship between deforestation<br />
and distance <strong>from</strong> roads. Minimum and maximum<br />
deforestation were at north and east aspects, respecttively.<br />
The result of applying logistic regression model<br />
indicated that distance <strong>from</strong> road is more effective than<br />
other parameters on deforestation in the study area.<br />
Lambin (1994) and Mas et al. (2004) mention that<br />
deforestation models are motivated by the following<br />
potential benefits:<br />
1. To provide a better understanding of how driving<br />
factors govern deforestation,<br />
2. To generate future scenarios of deforestation rates,<br />
3. To predict the location of forest clearing and,<br />
4. To support the design of policy responses to<br />
deforestation.<br />
According to Kaimowitz and Angels (1998), one way to<br />
model deforestation is to make use of empirical models.<br />
Several studies have analyzed land-use change under<br />
these approaches (Mertens and Lambin, 2000; Pontius et<br />
al., 2004; Pontius and Spencer, 2005; Rogan et al., 2008<br />
and Schneider and Pontius, 2001). Logistic regression<br />
performs binomial logistic regression, in which the input<br />
dependent variable must be binary in nature, that is, it<br />
can have only two possible values (0 and 1). Such<br />
regression analysis is usually employed in estimating a<br />
model that describes the relationship between one or<br />
more continuous independent variable(s) to the binary<br />
dependent variable. Logistic regression analysis fits the<br />
data to a logistic curve instead of the line obtained by<br />
ordinary linear regression. In addition to the prediction,<br />
logistic regression is also a useful statistical technique<br />
that helps to understand the relation between the<br />
Arekhi 16237<br />
dependent variable (change) and independent variables<br />
(causes) (Mas et al., 2004).<br />
In the particular, case of deforestation, the spatial forest<br />
change is a categorically dependent variable, which<br />
results <strong>from</strong> the interaction of several explanatory variables.<br />
Logistic regression and GIS have been demonstrated<br />
as useful tools to analyze deforestation by many<br />
authors (Echeverria et al., 2008; Etter et al., 2006c; Loza,<br />
2004; Ludeke et al., 1990; McConnell et al., 2004;<br />
Rossiter and Loza, 2008 and Van Gils and Loza, 2006).<br />
Logistic regression analysis has the advantage of<br />
taking into account several independent explanatory<br />
variables for the prediction of a categorical variable (Van<br />
Den Eeckhaut et al., 2006). In this case, the dependent<br />
variable is either change or no change that has occurred<br />
in the forests areas.<br />
Landsat MSS, TM and ETM + data have been broadly<br />
employed in studies toward the determination of LU/LC<br />
since 1972, the starting year of Landsat program, mainly<br />
in forest and agriculture areas (Campbell, 2007). The rich<br />
archive and spectral resolution of satellite images are the<br />
most important reasons for their use.<br />
The aim of change detection process is to recognize<br />
LU/LC between two or more periods of time (Muttitanon<br />
and Tiipathi, 2005). There are many techniques<br />
developed in literature <strong>using</strong> post classification compareson,<br />
conventional image differentiation, image ratio,<br />
image regression and manual on-screen digitization of<br />
change principal components analysis and multi date<br />
image classification (Lu et al., 2005). A variety of studies<br />
have addressed that post-classification comparison was<br />
found to be the most accurate procedure and presented<br />
the advantage of indicating the nature of the changes<br />
(Mas, 1999; Yuan et al., 2005). In this study, change<br />
detection comparison technique (at the pixel level) (that<br />
is, maximum likelihood method) was applied to the LU/LC<br />
maps derived <strong>from</strong> satellite imagery.<br />
The main objective of this study was to analyze and<br />
predict processes of forest conversion in the Zagros<br />
forests in western Iran. In order to reach the goal, the<br />
following specific objectives were considered:<br />
1. To determine and quantify forest changes that<br />
occurred in the Zagros forests <strong>from</strong> 1988 to 2007.<br />
2. To identify and analyze the most significant<br />
explanatory variables that lead to forest conversion in the<br />
Zagros forests.<br />
3. To establish a predictive model based on logistic<br />
regression and its validation.<br />
MATERIALS AND METHODS<br />
Study area<br />
The study area is situated in the province of Ilam, west of Iran<br />
between 33°35´ and 33°43´ latitude and between 46°17´ and<br />
47°13´ longitude (Figure 1) and covers about 225,593 ha. The main<br />
species of these forests consists; Quercus brantii, Quercus
16238 Afr. J. Biotechnol.<br />
Figure 1. Location of study area.<br />
infectoria and Quercus libani, the dominant species is Q. brantii. It<br />
covers a diversity of elevation, slope, population and land-use, etc.<br />
Beside the undamaged natural environment in some parts, a major<br />
part of the area has been changed by agriculture and grazing<br />
activities (Fattahi, 2003).<br />
Land-cover maps<br />
Multi-temporal Landsat satellite images <strong>from</strong> April 01, 1988 (Path<br />
167, Row 37), March 20, 2001 and May 24, 2007, were obtained<br />
<strong>from</strong> the Global Land Cover Facility (http://www.landcover.org),<br />
University of Maryland. The dates of these three images are chosen<br />
to be as closely as possible in the same vegetation season. The<br />
resolutions of all images are adjusted <strong>from</strong> 28.5 ×28.5 m to 30 × 30<br />
m. All visible and infrared bands (except the thermal infrared band)<br />
were used for the purpose of classification. Remote sensing image<br />
processing is performed <strong>using</strong> IDRISI Andes 15.0.<br />
The 1:25,000 digital topographic maps of the national<br />
cartographic Center of Iran have been used for geo-referencing of<br />
earlier mentioned three images. A digital elevation model (DEM)<br />
generated <strong>from</strong> 20 m contour lines are used to create slope and<br />
elevation maps. Digital elevation model (DEM) is produced <strong>from</strong> the<br />
standard topographic maps with the scale of 1:25,000. DEM is<br />
created by <strong>using</strong> ArcGIS 9.2 GIS software. Road networks and<br />
human settlements are manually digitized <strong>using</strong> ArcGIS 9.2 at the<br />
same scale. Pixel dimensions of all maps are in 30×30 m<br />
resolution.<br />
Pre-processing<br />
Landsat 2007 image is geo-referenced (universal transver<br />
mercator-UTM (Zone 38N), WGS84) to the maps of DEM, road<br />
networks, and human settlements, with an RMS error of less than 5<br />
m by <strong>using</strong> nearest neighborhood resampling method. The other<br />
two Landsat images are then geo-referenced to the 2007 image<br />
(image to image registration), with an error of less than 10 m. The<br />
radiometric corrections and systematic errors are removed <strong>from</strong> the<br />
data set providers.<br />
The model discussed in this study follows four sequential steps:<br />
(1) Elaboration of maps of deforestation obtained by overlaying<br />
maps of forest-cover <strong>from</strong> more than one point in time, (2)<br />
quantification of the relationships between deforestation and the<br />
causes (3) statistical selection of the most significant explanatory<br />
variables, (4) prediction of future deforestation in a business-as-
usual way.<br />
METHODS<br />
Figure 2. Forest and non-forest map of 1988.<br />
IDRISI Andes 15.0 was used to determine deforestation rates <strong>using</strong><br />
three different land-use/land-cover maps <strong>from</strong> 1988, 2001 and<br />
2007. The land-use/land-cover map of 1988 is produced by<br />
supervised maximum likelihood classification <strong>using</strong> training sites to<br />
identify forest, river, cropland, rangeland, barren land and<br />
settlement areas. The same methodology is applied to produce the<br />
land-use/land-cover maps of 2001 and 2007. Then, the classified<br />
land-use/land-cover maps are reclassified into two categories as<br />
forest and non-forest. Only forest areas are reclassified as "forest".<br />
While river, cropland, rangeland, barrenland and settlement areas<br />
are reclassified as "non-forest". The change <strong>from</strong> forest to nonforest<br />
is classified as deforestation. Finally, these maps are used to<br />
calculate the area of each land-use/land-cover type at each time<br />
period and to measure the deforestation rate <strong>from</strong> 1988 to 2007.<br />
Classification accuracy is evaluated by calculating overall accuracy<br />
and Kappa coefficient <strong>using</strong> an independent sample of 116<br />
ground control points (GCPs) obtained <strong>from</strong> field work. Areas of<br />
forest are calculated for the three dates and then annual rates of<br />
forest clearing are estimated. As a following step, images are overlaid<br />
in order to produce a digital map of deforestation that represents<br />
changes in forest cover. Therefore, the deforestation maps<br />
present only two classes: forest persistence (forest in both dates)<br />
and deforestation coded 0 and 1, respectively (Figures 5 and 6).<br />
The drivers<br />
Arekhi 16239<br />
The first step for deforestation modelling is to identify and collect<br />
information about factors that play a major role in the deforestation<br />
occurrence. An attempt is made to determine the relationship<br />
between deforestation, and environmental and socioeconomic<br />
factors, which are considered as priori elements that could<br />
influence deforestation such as distance <strong>from</strong> settlements, distance<br />
<strong>from</strong> roads, distance <strong>from</strong> forest edge, elevation, slope and forest<br />
fragmentation index. All these variables are integrated in a GIS and<br />
co-registered geometrically with the forest-cover-change map<br />
derived <strong>from</strong> the analysis of remote sensing images. Several spatial<br />
explanatory variables describing potential proximate causes of<br />
deforestation are generated as follow:<br />
1. Elevation: A digital elevation model (DEM) is constructed <strong>from</strong><br />
the contour lines, where the lines are digitized at the 1:25,000<br />
scale, at intervals of 20 m. The resulting elevation map is binned<br />
with 200 m intervals.<br />
2. Slope: Slope is another important factor that is generated <strong>from</strong><br />
elevation <strong>using</strong> ArcGIS 9.2.<br />
3. Distance <strong>from</strong> forest edge: It is calculated as a series of onepixel-wide<br />
buffers expanding <strong>from</strong> all interfaces between pixels<br />
classified as forest and non-forest. To remove the influence on this<br />
distance, calculations of isolated pixels are classified as forest or<br />
non-forest, and the land-cover map is first smoothed <strong>using</strong> a 3×3
16240 Afr. J. Biotechnol.<br />
pixel low pass filter. For this smoothing, the most frequently<br />
occurring class in the window is assigned to the central pixel of a<br />
moving window.<br />
4. Distance to the nearest road: This variable is calculated as a<br />
series of buffers of 100 m expanding <strong>from</strong> each road segment. Most<br />
of the roads in the study area are gravel roads with quality largely<br />
dependent on the maintenance efforts and it is highly variable in<br />
time. Each road is, therefore, treated as equally suitable for<br />
transport of goods and people.<br />
5. Distance to the nearest settlement: It is calculated as a series of<br />
buffers of 100 m, expanding <strong>from</strong> each center. Only the officially<br />
registered village, district and town centers are taken into account.<br />
The following procedure is used to obtain the variable distances for<br />
Steps 4 and 5.<br />
a. Road networks and human settlements shape files were<br />
imported.<br />
b. Raster files were created <strong>from</strong> each of the vector files.<br />
c. The Operator DISTANCE was applied.<br />
6. Forest fragmentation index: In this study, fragmentation index is<br />
estimated <strong>using</strong> Matheron method (Matheron, 1970). Matheron<br />
method, calculated in 3×3 pixels windows, is defined as:<br />
M<br />
N<br />
N<br />
F<br />
F<br />
*<br />
NF<br />
N<br />
Where, NF-NF is the number of boundaries between forest and nonforest<br />
pixels, Nf is the number of forest pixels and N is the total<br />
number of pixels. The numerator measures the number of pairs of<br />
adjacent pixels classified as forest and non-forest (that is, the<br />
length of the perimeter line of forest pixels) and the denominator<br />
normalizes this count by the size of the forest and entire area<br />
(Mertens and Lambin, 1997).<br />
Logistic regression model (LRM)<br />
Forest conversion is modelled and analyzed <strong>using</strong> logistic<br />
regression model (LRM) in IDRISI Andes 15.0. The purpose of<br />
modelling was (i) to assess the relative signification of six<br />
explanatory variables on forest change during the period 1988 to<br />
2007; and (ii) to predict probability of deforestation for future.<br />
LRM is a variation of ordinary regression which is used when the<br />
dependent (response) variable is a dichotomous variable.<br />
In this study, as mentioned before, the dependent variable is a<br />
binary presence or absence event, where 1= forest change and 0=<br />
no change, for the period 1988 to 2007. The logistic function gives<br />
the probability of forest change as a function of the explanatory<br />
variables. In other words, the probability of forest change for each<br />
pixel is a function of the values that the other variables have for the<br />
same pixel. According to Schneider and Pointius (2001) the<br />
function is a monotonic curvilinear response bounded between 0<br />
and 1, given by a logistic function of the form:<br />
(1)<br />
Where, p is the probability of forest loss in the cell, E(Y) the<br />
expected value of the binary dependent variable Y, β0 is a constant<br />
to be estimated, βi‟s are coefficients to be estimated for each<br />
independent variable Xi. The logistic function can be transformed<br />
into a linear response with the transformation:<br />
Hence:<br />
The transformation (Equation 2) <strong>from</strong> the curvilinear response<br />
(Equation 1) to a linear function (Equation 3) is called a logit or<br />
logistic transformation. The transformed function allows linear<br />
regression to estimate each βi. Since each of the observations is a<br />
pixel, the final result is a probability score (p) for each pixel.<br />
In LRM, the significance of the coefficients βi is tested with the<br />
Wald test, which is obtained by comparing the maximum likelihood<br />
estimate of every βi with its estimated standard error (Hosmer and<br />
Lemeshow, 1989; Eastman, 2006). It is the coefficient divided by its<br />
standard error. Thus, if the relative error is high, the Wald statistic is<br />
small. This gives an idea of the significance of each predictor: the<br />
greater the absolute value, the more significant. Note that the sign<br />
of the Wald statistic is the same as that of the coefficient, and thus<br />
gives the direction of the effect: increase or decrease in probability<br />
due to the predictor.<br />
Accordinge to Ayalew and Yamagishi (2004), in order to<br />
appropriately interpret the meanings of Equation 1, one has to use<br />
the coefficients as a power to the natural log(e). The result<br />
represents the odds ratio or the probability that an event will occur<br />
divided by the probability that it fails to do so. If the coefficient is<br />
positive, its transformation to log value will be greater than one,<br />
meaning that the event is more likely to occur. If it is negative, then<br />
the transformed log value will be less than one and the odds of the<br />
event occurring decrease. A coefficient of 0 has a transformed log<br />
value of 1, and it does not change the odds one way or the other.<br />
For a positive coefficient, the probability plotted against the values<br />
of an independent variable follows an S-shaped curve. A mirror<br />
image will be obtained for a negative coefficient (Ayalew et al.,<br />
2005).<br />
Calibration of the Model<br />
To calibrate the LRM, the explanatory variables are incorporated in<br />
the IDRISI‟s LRM as independent variables. The forest change for<br />
the period 1988 to 2001 is incorporated as the dependent variable.<br />
The stepwise method is used to select the best set of predictor<br />
variables since the study considered 6 different predictor sets.<br />
Finally, Van Gils and Loza (2006) methodology is used to select the<br />
best-fitted model with the minimum amount of predictors measured<br />
by means of the Akaike Information Criterion (AIC) index. The<br />
smaller the AIC is, the better the fit of the model. The results are the<br />
regression equation of the best-fitted predictors set and a map of<br />
probability of deforestation.<br />
Prediction of the model<br />
The prediction for forest change between the year 2001 and the<br />
year 2007 is performed <strong>using</strong> the obtained probabilities of<br />
deforestation for the year 2001. For the new prediction, the dynamic<br />
variables such as distance <strong>from</strong> forest edge, distance <strong>from</strong> roads<br />
and fragmentation index are changed as long as they were in the<br />
year 2001. The variables, distance <strong>from</strong> settlements, elevation and<br />
slope remained the same. The result is a new map of probability of<br />
forest change for the year 2007.<br />
(2)<br />
(3)
Model validation<br />
Figure 3. Forest and non-forest map of 2001.<br />
The observed forest change map of 2007 is used to assess the<br />
accuracy of probability of forest change with the relative operation<br />
characteristic (ROC) curve, which is an effective and widely used<br />
method for evaluating the discriminating power of a statistical model<br />
(Hu and Lo, 2007; Pontius and Schneider, 2001). Eastman (2006)<br />
also mentions that ROC can be used to determine how well a<br />
continuous surface predicts the locations given the distribution of a<br />
Boolean variable (in this study, forest change is the Boolean<br />
variable). A ROC curve is a graph of the true positive and false<br />
positives fractions. The ROC works for two or more land types. If a<br />
grid cell is simulated as change in a scenario, it is a „positive‟.<br />
Therefore, a „true-positive‟ is a cell which is categorized as change<br />
in both actual and the modeled scenario. Conversely, a „falsepositive‟<br />
is a cell that is categorized as non-change in reality and as<br />
change in the modeled scenario. ROC plots the rate of truepositives<br />
on the vertical axis versus the rate of false-positives on<br />
the horizontal axis. If the sequence of the suitability values matches<br />
perfectly the sequence in which real land-cover change has<br />
occurred, then ROC equal to 1. As model performance improves,<br />
the curve moves towards the upper left corner and the area under<br />
ROC increases accordingly.<br />
RESULTS<br />
Accuracy assessment was performed for 1988, 2001 and<br />
2007 LU/LC maps (forest/non-forest). The overall<br />
Arekhi 16241<br />
accuracy of the classified maps for the years 1998, 2001<br />
and 2007 ranged <strong>from</strong> 83 to 87%, and Kappa indices<br />
varied <strong>from</strong> 0.71 and 0.73. Figures 2, 3 and 4 display the<br />
1988, 2001 and 2007 land-cover maps (forest/non-forest)<br />
created for the study area, respectively. These images<br />
are then overlaid in order to generate the digital forest<br />
change detection maps for two intervals; namely, 1988 to<br />
2001 and 2001 to 2007 (Figures 5 and 6). The results of<br />
forest change detection in the Zagros forests show that<br />
28.2% of primary forest has been lost <strong>from</strong> 1988 to 2007.<br />
This study selected the set predictor Step 6 as the best<br />
combination to be used in the prediction (Table 1). The<br />
selection procedure is performed as follows. According to<br />
Ayalew and Yamagishi (2005), a key starting point could<br />
be the model chi-square, whose value provides the usual<br />
significance test for logistic regression. It is a difference<br />
between −2lnL (L=likelihood) for the best-fitting model<br />
(predictor set) and −2lnL0 for the null hypothesis in which<br />
all the coefficients are set to 0. The value measures the<br />
improvement in fit that the independent variables brought<br />
into the regression. In this study, the high value chisquare<br />
(for the predictor set Step 6) indicates that the<br />
occurrence of forest change is far less likely under the<br />
null hypothesis (without the forest conversion influencing<br />
parameters) than the full regression model (where the
16242 Afr. J. Biotechnol.<br />
Figure 4. Forest and non-forest map of 2007.<br />
parameters are included). The goodness of fit is an<br />
alternative to Chi-square for assessing the significance of<br />
LRM. It is calculated based on the difference between the<br />
observed and the predicted values of the dependent<br />
variable. The smaller this statistic is, the better fit it<br />
indicates. Model step 6 has a value of 359,634, which is<br />
the smallest Goodness of fit statistic among the model<br />
sets. The pseudo R-square value, which can be<br />
calculated <strong>from</strong> 1− (ln L/ln L0), indicates how the logit<br />
model fits the dataset (Menard, 1995). Thus, pseudo Rsquare<br />
equal to 1 indicates a perfect fit, whereas 0 shows<br />
no relationship. When a pseudo R-square is greater than<br />
0.2, it shows a relatively good fit (Clark and Hosking,<br />
1986; Ayalew et al., 2005). The pseudo R-square of the<br />
Step 6 predictor set is 0.23. Under ROC, the Step 6<br />
predictor set obtained an accuracy of 0.96% and<br />
provided the smallest AIC index making it the best-fitted<br />
predictor set (Table 2). Regression equation best-fitted<br />
Step 6 predictor set.<br />
Linear probability (logit) =1.95<br />
-0.36* Distance <strong>from</strong> roads log<br />
-0.45* Distance <strong>from</strong> settlements log<br />
-0.31* Distance <strong>from</strong> forest edge log<br />
0.23* Fragmentation index<br />
-0.35* Slope<br />
-0.52* Elevation<br />
The relative contribution of the explanatory variables can<br />
be assessed <strong>using</strong> the corresponding coefficients in the<br />
LRM. According to Eastman (2006), the intercept can be<br />
thought of as the value for the dependent variable when<br />
each independent variable takes on a value of zero. The<br />
coefficients indicate the effects of each of the explanatory<br />
variables on the dependent variable.<br />
Figures 7 and 8 show the results of the calibration and
Figure 5. Cross 1988-2001.<br />
the prediction of the LRM. The color in the figures<br />
indicates the degree of probability of deforestation. Areas<br />
in dark blue show high probability for forest conversion,<br />
while, areas in other colors have decreasing probability<br />
for deforestation. Figure 9 illustrates the real change<br />
occurred for the period 2001 to 2007, areas in black are<br />
areas of changes. Figure 10 illustrates the ROC curve for<br />
the LRM. The Area under the ROC Curve is 0.961.<br />
DISCUSSION<br />
There may be many driving factors of forest conversion,<br />
and they may vary <strong>from</strong> place to place. In this case study,<br />
selected spatial variables comprise a considerable share<br />
of the factors driving forest changes. In particular, the<br />
accessibility variables seem to be more important than<br />
the topographical ones. Many of these factors have been<br />
found to be important in other areas. For example,<br />
Merten and Lambin (1997) identified proximity to road,<br />
Arekhi 16243<br />
town and forest/non-forest edge as important drivers of<br />
forest change in southern Cameroon. Elevation and<br />
proximity to road are highlighted as important factors of<br />
forest change in the lowlands of Sumatra, Indonesia<br />
(Linkie et al., 2004). Elevation, slope, proximity to road,<br />
settlement and proximity to forest/non-forest edge are the<br />
key factors of forest change in southeast Mexico (Mas et<br />
al., 2004). The modelling of forest conversion considered<br />
six explanatory variables: Distance <strong>from</strong> forest edge,<br />
distance <strong>from</strong> roads, distance <strong>from</strong> settlements,<br />
elevation, slope and fragmentation index. In the LRM<br />
analysis, six predictor sets are compared. The best fitted<br />
predictor set is a combination of all the variables<br />
incorporated into the model. For this combination, the<br />
AUC is 96% and the AIC index is the lowest for the tested<br />
predictor sets.<br />
Among continuous variables, distance <strong>from</strong> settlements<br />
is the best single predictor for forest change (1988 to<br />
2007), with a β value of -0.45. This means that the<br />
probability of forest change decreases in direct proportion
16244 Afr. J. Biotechnol.<br />
Figure 6. Cross 2001-2007.<br />
to the increase in distance <strong>from</strong> the borders. In other<br />
words, the model assigns higher values of probability of<br />
change to areas, which are closer to the forest borders.<br />
Distance <strong>from</strong> roads and distance <strong>from</strong> forest edge have<br />
the nearly same negative value (β= -0.36; β= -0.31). The<br />
model assigns the similar significance to these two<br />
variables. The negative value means that the probability<br />
of forest change decreases in direct proportion to the<br />
increase in distance <strong>from</strong> roads and forest edge. In other<br />
words, the model assigns higher values of probability of<br />
change to areas which are closer to roads and forest<br />
edge. Finally, forest change has positive relation with<br />
fragmentation index (β=+0.23). This means that<br />
fragmented forest is degraded more than protected area.<br />
Many studies have attributed road infrastructure to one<br />
main cause of deforestation. Geist and Lambin (2002)<br />
and Krutilla et al. (1995) argued that the construction of<br />
roads requires clearing of vegetation that leads to<br />
deforestation. Greater access to forests and markets will<br />
accelerate the deforestation.<br />
The variables, distance <strong>from</strong> settlements and distance<br />
<strong>from</strong> roads are significant factor for forest conversion in<br />
this study, as well as mentioned by other studies<br />
(Echeverria et al., 2008; Etter et al., 2006a, b; Geist and<br />
Lambin, 2001; Loza, 2004; Vanclay et al., 1999), In the<br />
particular case of the deforestation in the Zagros forests,<br />
it is believed that first people settle land reached beyond<br />
existing roads and then they develop roads to reach the<br />
already taken lands. However, this is difficult to verify with<br />
the data and the analysis provided by this study.<br />
Meanwhile, among categorical variables, elevation is<br />
the best single predictor for forest change (1988 to 2007),<br />
with a β value of -0.52. This means that the probability of<br />
forest change decreases in direct proportion to the<br />
increase in elevation <strong>from</strong> the lower elevations. In other<br />
words, the model assigns higher values of probability of<br />
change to areas, which are located in lower altitudes (in<br />
other words, more accessible areas). Finally, slope also<br />
has good negative association (β = -0.35) with forest<br />
change. It means with increase in slope, forest change<br />
decreases due to decreasing accessibility to that. The<br />
conversion. The topography of Loza‟s study area
Table 1. Coefficients of logistic regression <strong>using</strong> 6 sets of explanatory variables.<br />
Variable<br />
Set 1 Set 2<br />
Coefficient<br />
Set 3 Set 4 Set 5 Set 6<br />
Intercept 0.39 1.01 1.21 1.80 2.23 1.95<br />
Distance <strong>from</strong> roads -0.60 -0.52 -0.38 -0.29 -0.30 -0.36<br />
Distance <strong>from</strong> settlements -0.57 -0.43 -0.40 -0.41 -0.45<br />
Distance <strong>from</strong> forest edge -0.38 -0.31 -0.30 -0.31<br />
Fragmentation index 0.29 0.25 0.23<br />
Slope -0.44 -0.35<br />
Elevation -0.52<br />
Table 2. Other statistics of logistic regression <strong>using</strong> 6 sets of explanatory variables<br />
Arekhi 16245<br />
Statistic Set 1 Set 2 Set 3 Set 4 Set 5 Set 6<br />
Total number of pixel 2,507,925 2,507,925 2,507,925 2,507,925 2,507,925 2,507,925<br />
−2lnL (L=likelihood) 241,734 230,936 229,930 219,983 214,249 201,426<br />
−2ln L0 435,731 430,328 356,701 383,941 361,618 340,231<br />
Model chi square 51,928 53,765 55,321 570,551 589,318 59,601<br />
Goodness of fit 401,369 400,187 391,442 376,964 368,980 359,634<br />
Pseudo R-square 0.15 0.18 0.21 0.22 0.22 0.23<br />
AUC 0.76 0.79 0.83 0.87 0.91 0.96<br />
Odds ratio 4.21 4.37 4.41 4.46 4.30 5.05<br />
AIC 247,651 238,756 220,908 217,781 215,645 201,341<br />
Figure 7. Map of probabilities of deforestation obtained by LRM (calibration 2001).
16246 Afr. J. Biotechnol.<br />
Figure 8. Map of probabilities of deforestation obtained by LRM (Prediction 2007).<br />
presents mostly hills (lower altitude) and flat areas.<br />
The involvement of some variables such as land tenure<br />
status, and other socio-economic data (level of income,<br />
level of education), which have contributed to<br />
deforestation might be incorporated in the model. Zagros<br />
forests have threats such as the construction of a road<br />
across the area, population density and agroforestry. The<br />
aim of this research is to predict probabilities of forest<br />
conversion. However, areas of change (not only<br />
probabilities) can be predicted by incorporation of<br />
methods such as Markov chains, Geomod and cellular<br />
automata. While this study considered only two<br />
categories, “forest and disturbed forest”, further studies<br />
could model additional categories of land-cover.<br />
Conclusion<br />
The identification of the areas vulnerable to forest<br />
changes is fundamental in the Zagros forests and has<br />
important implications for biodiversity conservation in the<br />
region. One of the most important applications would be<br />
to relate the spatial patterns of forest changes to the<br />
spatial distribution of species. From a protected area<br />
management perspective, the prediction maps of forest<br />
change patterns can help protected area managers to<br />
identify places, where conservation and forest<br />
management efforts should be focused. At a larger scale,<br />
the prediction of forest change patterns can aid long-term<br />
sustainable forest management. Policy implication of the<br />
result model prediction is that the government should<br />
take more attention to the population problem and have<br />
to create non-agricultural sectors jobs in order to reduce<br />
pressure on forest, especially at district which will face<br />
serious deforestation. This study investigate the<br />
conversion of forest <strong>using</strong> remote sensing, GIS and<br />
logistic regression model in the Zagros forests of west of<br />
Iran. The LRM is parameterized to simulate the<br />
conversion of forest in the near future. It is shown that the<br />
utility of a combination of statistical modeling approach
Figure 9. Forest change year 2007(1=change; 0= No change).<br />
True Positive(%)<br />
120<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
0<br />
3<br />
9<br />
21<br />
32<br />
44<br />
False Positive(%)<br />
Figure 10. Predictive performance assessment LRM (AUC/ROC).<br />
55<br />
66<br />
78<br />
89<br />
100<br />
AUC/ROC = 96%<br />
True positive(%)<br />
False positive(%)<br />
Arekhi 16247
16248 Afr. J. Biotechnol.<br />
and spatial analysis is necessary in order to analyze and<br />
predict deforestation. Distance <strong>from</strong> forest settlements,<br />
distance <strong>from</strong> roads, distance <strong>from</strong> forest edge,<br />
fragmentation index, elevation and slope are found to be<br />
the important variables in the model for explaining the<br />
pattern of deforestation observed in the Zagros forests.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16250-16259, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1202<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Differential response to water deficit stress in alfalfa<br />
(Medicago sativa) cultivars: Growth, water relations,<br />
osmolyte accumulation and lipid peroxidation<br />
Inès Slama, Selma Tayachi, Asma Jdey, Aida Rouached and Chedly Abdelly*<br />
Laboratoire des Plantes Extrêmophiles, BP 901, Centre de Biotechnologie, Technopole de Borj Cédria, Hammam-Lif<br />
2050, Tunisia.<br />
Accepted 5 August, 2011<br />
The present study was fixed as objective to compare the response to water deficit (33% of field<br />
capacity, FC) stress of eight cultivars of Medicago sativa, originating <strong>from</strong> the Mediterranean basin.<br />
Comparison was performed on some key parameters such as growth, relative water content, leaf water<br />
potential, MDA tissue content, electrolyte leakage and proline and soluble sugar tissue concentrations.<br />
In all cultivars, water deficit stress reduced the whole plant growth, increased the root/shoot DW ratio<br />
and led to a significant decrease in leaf relative water content and leaf water potential. In water-stressed<br />
plants and for the majority of cultivars, proline and soluble sugar concentrations increased<br />
significantly. The Tamantit cultivar originating <strong>from</strong> Algeria showed the better tolerance to water deficit<br />
stress. Some criteria are concomitant with this tolerance: (1) a high biomass production under stress<br />
conditions when compared to other cultivars (2) the root preferential development, (3) the better ability<br />
to accumulate proline and soluble sugars, and (4) the aptitude to protect its photosynthetic apparatus<br />
against the oxidative stress generated by the water deficit stress. Ecotipo Siciliano, originating <strong>from</strong><br />
Italy was the most sensitive cultivar. The increase of proline and soluble sugars concentrations upon<br />
water deficit stress particularly in the most tolerant cultivar suggested their involvement in the osmotic<br />
adjustment.<br />
Key words: Medicago sativa, intraspecific variability, water deficit stress, osmotic adjustment, MDA.<br />
INTRODUCTION<br />
Environmental constraints such as drought, flooding,<br />
extreme temperature, salinity, heavy metals, photon<br />
irradiance and nutritional disturbances represent the most<br />
limiting factors for agricultural productivity and play a<br />
major role in the distribution of plant species across<br />
different types of environments (Ashraf, 2010). It has<br />
been estimated that two-thirds of the potential yield of<br />
major crops are usually lost due to adverse growing<br />
environments (Chaves et al., 2009). Water shortage is<br />
the major constraint affecting fodder production and yield<br />
stability in most arid and semi-arid regions (Shao et al.,<br />
2009). The situation worsens by the fact that most<br />
climate change scenarios predict a worldwide increase in<br />
*Corresponding author. E-mail: chedly.abdelly@cbbc.rnrt.tn.<br />
Tel: (+216) 79 325 848. Fax: (+216) 79 325 638.<br />
arid areas. When faced with this climatic change and<br />
increasing water demand for agriculture, the selection of<br />
plants resistant to water deficit stress and particularly the<br />
identification of physiological proprieties used by<br />
Fabaceae species to cope with drought are of paramount<br />
importance (Erice et al., 2010; Sambatti and Caylor,<br />
2007). Improvement of plant drought resistance becomes<br />
urgent and should integrate conventional breeding and<br />
biotechnological approaches (Shao et al., 2006, 2009).<br />
Due to their capacity of symbiotic nitrogen fixation,<br />
leguminous plants, like Medicago sativa, are often used<br />
to improve soil organic fertility and nitrogen economy<br />
(Erice et al., 2010; Yousfi et al., 2010). Most leguminous<br />
trees and shrubs having deep roots and fix nitrogen are<br />
able to resist drought and can thrive on poor soils with<br />
little nutrients.<br />
Some plants have evolved various protective<br />
mechanisms allowing them to survive and grow in harsh
environments and respond to water deficit stress through<br />
multiple physiological, biochemical and molecular<br />
mechanisms (Anjum et al., 2011). Plant responses to<br />
water deficit stress generally vary with varieties, severity<br />
as well as with the duration of water shortage. Among<br />
these responses, osmotic adjustment (OA), which is<br />
defined as the lowering of osmotic potential in plant<br />
tissue due to net accumulation of organic and/or mineral<br />
solutes, is a key of plant osmo-tolerance (Yang et al.,<br />
2011). Compatible solutes involved in OA may act as<br />
cytoplasmic osmolytes facilitating water uptake and<br />
retention but also serves as protection in plants suffering<br />
<strong>from</strong> oxidative stress by the detoxification of reactive<br />
oxygen species and stabilizer of macromolecules and<br />
cellular structures (Szabados and Savouré, 2010). These<br />
beneficial impacts have been reported for proline,<br />
glycinebetaine, soluble sugars and polyols. Common with<br />
other abiotic stresses, drought causes increased<br />
production of activated oxygen species (ROS) that<br />
inactivate enzymes and damage cellular components<br />
(Shao et al., 2007, 2008). Oxidative stress occurs when<br />
the defence capacity of plants is broken by the formation<br />
of free radicals. Malondialdehyde (MDA) is an end<br />
product of membrane lipid peroxidation; it has been used<br />
extensively as an indicator for free radical production and<br />
membrane injury under various abiotic stress conditions<br />
(Hermandez et al., 2001). An over-accumulation of<br />
proline in transgenic tobacco subjected to osmotic stress<br />
reduced free radicals levels, assessed by MDA<br />
production (Paranova et al., 2004).<br />
Since water availability is usually the main factor<br />
affecting productivity in dry regions, strategies aiming at<br />
improving sustainable use of water and plant drought<br />
tolerance are urgent (Erice et al., 2010). In this context,<br />
exploration of the variability in osmotic stress responses<br />
would permit not only to identify some tolerant varieties,<br />
but also to determine useful criteria for genetic<br />
improvement of osmotic stress tolerance. As part of this<br />
approach, the present study aimed to investigate the<br />
differential response of eight Medicago sativa cultivars<br />
originating <strong>from</strong> the Mediterranean basin to water deficit<br />
stress.<br />
MATERIALS AND METHODS<br />
Growth conditions<br />
Experiment was carried out on 8 M. sativa cultivars originating<br />
mainly <strong>from</strong> Mediterranean basin: Mamuntanas, Sardi 10, Ecotipo<br />
Siciliano (Italy), Ameristand 801S (USA), Gabes 2355 (Tunisia),<br />
Rich 2 (Marocco), Magali (French) and Tamantit (Algeria). Plants<br />
were cultivated in 25 L plastic pots (30 cm of depth). Every pot was<br />
filled with 25 kg of soil <strong>from</strong> the Centre of Biotechnology at the<br />
Technopark of Borj Cedria (CBBC) parcel. It is a limono-sandy soil<br />
containing 0.25, 0.95, 0.65 and 0.05 meq 100 g −1 of dry soil of Na + ,<br />
K + , Ca 2+ ,Cl − , respectively and 0.24 and 0.45 g kg −1 of dry soil of<br />
P2O5 and total N, respectively. The pH and the electrical<br />
conductivity of the aqueous extract (1/10) were 6.65 and 0.05<br />
mmhos cm −1 , respectively. Culture was conducted in semi-<br />
Slama et al. 16251<br />
controlled conditions in greenhouse in CBBC. Seeds were sown at<br />
a rate of 8 seeds per pot. The obtained seedlings were subjected to<br />
a phase of one month pre-treatment during which soil was<br />
maintained at 100% field capacity (irrigation was carried out with<br />
tap water). At the end of this phase of pre-treatment, the plants of<br />
each cultivar were divided into two batches, control plants (100%<br />
FC) and of the stressed ones (33% FC). Regular weightings (every<br />
2 days) enabled to restore the moisture of soil at 100 or 33% FC.<br />
The plant weight was neglected. Experiments were carried-out in<br />
greenhouse with a 14 h photoperiod (photosynthetic photon flux<br />
density, PPFD: 1000 µmol m -2 s -1 ). Mean temperature and relative<br />
humidity were, respectively 30±5°C, 55±5% day and 16±2°C,<br />
90±5% night. At the end of one month of treatment, a final harvest<br />
was carried out and plants were separated into shoots and roots.<br />
Growth, water relation measurements and leaf water potential<br />
Fresh weights (FW) of plant samples (roots and shoots) were<br />
determined upon harvesting. Dry weight (DW) was obtained after<br />
oven drying the samples at 60°C until a constant weight was reached.<br />
Relative water content (RWC) was measured in the third<br />
youngest fully expanded leaf harvested in the morning. RWC were<br />
determined <strong>using</strong> the following equation (Schonfeld et al., 1988):<br />
RWC (%) = 100 × (FW − DW)/ TW – DW<br />
FW was determined within 2 h after harvest. Turgid weight (TW)<br />
was obtained after soaking leaves in distilled water in test tubes for<br />
12 h at room temperature (about 20°C), under low light condition of<br />
laboratory. After soaking, leaves were quickly and carefully blotted<br />
dry with tissue paper in preparation for determining turgid weight.<br />
Dry weight (DW) was obtained after oven drying at 60°C until a<br />
constant weight was reached. For Ψs, leaves were quickly<br />
collected, cut into small segments, then placed in Eppendorf tubes<br />
perforated with four small holes and immediately frozen in liquid<br />
nitrogen. After being encased individually in a second intact<br />
Eppendorf tube, they were allowed to thaw for 30 min and<br />
centrifuged at 15,000 × g for 15 min at 41°C (Martínez-Ballesta et<br />
al., 2004). The collected sap was analysed for Cs estimation.<br />
Osmolarity (C) was assessed with a vapour pressure osmometer<br />
(Wescor 5500) and converted <strong>from</strong> mosmoles kg -1 to MPa<br />
according to the Van’t Hoff equation:<br />
ψs= -R T M<br />
R is the universal gas constant, T is the temperature (K) and M is<br />
the osmolality<br />
Lipid peroxidation<br />
The extent of lipid peroxidation was assessed by determining the<br />
concentration of malondialdehyde (MDA) (Draper and Hadley,<br />
1990). Leaf material was homogenized in 0.1% (w/v) TCA solution.<br />
The homogenate was centrifuged at 15,000 × g for 10 min and 1 ml<br />
of the supernatant obtained was added to 4 ml 0.5% (w/v) TBA in<br />
20% (w/v) TCA. The mixture was incubated at 90°C for 30 min, and<br />
the reaction was stopped by placing the reaction tubes in an ice<br />
water bath. Samples were centrifuged at 10,000 × g for 5 min, and<br />
the absorbance of the supernatant was read at 532 nm. The value<br />
for non-specific absorption at 600 nm was subtracted. The<br />
concentration of MDA was calculated <strong>from</strong> the extinction coefficient<br />
155 mM –1 cm –1 .<br />
Electrolyte leakage<br />
The leaf and root samples (0.2 g) were placed in test tubes
16252 Afr. J. Biotechnol.<br />
containing 10 ml of double distilled water. The leaves were cut into<br />
discs of uniform size (5 mm length). The tubes were incubated in a<br />
water bath at 32°C for 2 h and the initial electrical conductivity of<br />
the medium (EC1) were measured. The samples were autoclaved<br />
at 121°C for 20 min to release all the electrolytes, cooled to 25°C<br />
and the final electrical conductivity (EC2) were measured. The<br />
electrolyte leakage (EL) was calculated by <strong>using</strong> the formula:<br />
EL = (EC1/ EC2)*100 (Dionisio-Sese and Tobita, 1998).<br />
Proline and soluble sugars determination<br />
Free proline was quantified spectrophotometrically <strong>using</strong> the<br />
method of Bates et al. (1973), while the soluble sugars were<br />
determined by the anthrone reagent method according to Yemm<br />
and Willis (1954).<br />
Proline was determined following the ninhydrin method, <strong>using</strong> Lproline<br />
as a standard. Leaf samples (100 mg FW) were<br />
homogenized in 1.5 ml of 3% (w/v) aqueous sulfosalicylic acid and<br />
centrifuged for 30 min at 14,000 g. To the supernatant (500 µl), 2 ml<br />
of acid ninhydrin and 2 ml of glacial acetic acid were added and the<br />
mixture was boiled for 1 h. After extraction with toluene, the free<br />
proline was quantified (λ = 520 nm) <strong>from</strong> the organic phase <strong>using</strong><br />
an Anthelie Advanced 2, SECOMAN spectrophotometer. Proline in<br />
the test samples was calculated <strong>from</strong> a standard curve prepared<br />
against L-Proline (5 to 30 µg, <strong>from</strong> MERCK KGaA):<br />
y = 0.059x – 0.014, R 2 = 0.99.<br />
The content of total soluble carbohydrates in the studied samples<br />
was determined according to Mc Cready et al. (1950) and Staub<br />
(1963), <strong>using</strong> glucose as a standard. Twenty-five milligram (DW)<br />
leaf samples was homogenized with 5 ml methanol 80% and boiled<br />
while shaking at 70°C for 30 min. The homogenate was centrifuged<br />
for 15 min at 6,000 g. After decanting, the residue was<br />
resuspended in 5 ml of the extraction solution and centrifuged at<br />
6,000 g for 10 min. The supernatant was decanted and combined<br />
with the original extract. For measurement of total soluble<br />
carbohydrates, anthrone–sulfuric acid assay was used. An aliquot<br />
of 250 µl was added to 5 ml of anthrone– sulfuric acid solution. The<br />
mixture was shaken, heated in a boiling water-bath for 10 min and<br />
cooled at 4°C. The absorption was determined by spectrophotometry<br />
(Anthelie Advanced 2, SECOMAN) at 640 nm. A<br />
standard curve was prepared <strong>using</strong> different concentrations of<br />
glucose (0 to 100 µg, <strong>from</strong> MERCK KGaA). From the standard<br />
curve, the concentrations of soluble carbohydrates in the test<br />
samples were calculated (y = 0.0095x – 0.0299, R 2 = 0.979).<br />
Statistical analysis<br />
Standard analysis of variance was done (AV1W procedure of<br />
MSUSTAT 4.12, Richard E. Lund, Montana State University (Lund,<br />
1989).<br />
RESULTS<br />
Growth<br />
As shown in Figure 1, under 100% FC, Sardi 10, Tamantit<br />
and Rich 2 are the most productive cultivars and<br />
Mamuntanas the less productive one. The other cultivars<br />
occupied the intermediate position. Under water deficit<br />
stress, biomass production was significantly decreased<br />
in all cultivars. However, a large variability was observed.<br />
Shoot DW was reduced by 55% in Tamantit and up to<br />
75% in Ecotipo Siciliano. This DW reduction was ranged<br />
between 64 and 70% in the other cultivars. It is important<br />
to note that upon water deficit stress, Tamantit, which<br />
showed the lowest DW reduction compared to its control,<br />
exhibited the highest biomass production under these<br />
conditions (2.5 fold biomass when compared to Ecotipo<br />
Siciliano).<br />
Relative water content and osmotic potential<br />
The analysis of the water relations (Figure 2A) showed<br />
that relative water content was ranged between 30 and<br />
40% for plants submitted to non limiting water supply and<br />
between 10 and 23% for water deficit stressed ones.<br />
Thus, a significant decrease was observed in RWC<br />
values in all cultivars when submitted to water deficit<br />
stress. Tamantit, Sardi 10 and Ameristand, preserved<br />
also the highest RWC values in their leaves, whereas<br />
Ecotipo Siciliano showed the lowest RWC values in<br />
leaves.<br />
Leaf osmotic potential decreased significantly in M.<br />
sativa cultivars subjected to water deficit stress (Figure<br />
2B). However, the difference between the values of this<br />
parameter in plants subjected to the water deficit stress<br />
compared to their respective control is more important in<br />
Tamantit (reduction by 70%) than in Magali, Ameristand<br />
and Sardi (53%) and particularly Ecotipo Siciliano (38%).<br />
Dry matter partitioning between organs<br />
The root /shoot ratio assessed on the basis of dry matter<br />
did not exceed 1.6 for well watered plants. However, it<br />
increased significantly in all the cultivars subjected to<br />
water deficit stress (Figure 3). A large variability was<br />
observed. Tamantit showed significantly the highest<br />
value of this ratio and Ecotipo Siciliano exhibited the<br />
lowest root /shoot ratio value.<br />
Proline accumulation<br />
Plants submitted to 100% FC accumulated proline<br />
(Figure 4) at low levels not exceeding 0.8 µmol g -1 FW<br />
and no significant differences were observed between<br />
cultivars upon appropriate water supply. The water deficit<br />
stress led to a significant increase in leaf proline<br />
concentrations in all cultivars except Mamuntanas<br />
cultivars (Figure 4). A large variability was also observed<br />
at this criterion level.<br />
The most tolerant cultivar identified on the basis of<br />
growth and water relation, Tamantit, is characterized by<br />
the highest proline concentrations, about 6 µmol g -1 FW.<br />
Indeed, this cultivar accumulates at least twice more<br />
proline that the sensitive one.
Carbohydrate content<br />
Figure 1. Changes in shoot dry matter production in eight cultivars of Medicago sativa<br />
during one month of treatment with appropriate water supply (open columns): 100% field<br />
capacity and 33% field capacity (dotted columns). Values are the means of ten replicates,<br />
vertical bars are SE. Values sharing a common latter are not significantly different at<br />
P
16254 Afr. J. Biotechnol.<br />
Figure 2. Changes in the leaf relative water content (A) and leaf osmotic potential (B) in eight<br />
cultivars of Medicago sativa during one month of treatment with appropriate water supply<br />
(open columns): 100% field capacity and 33% field capacity (dotted columns). Values are the<br />
means of ten replicates, vertical bars are SE. Values sharing a common latter are not<br />
significantly different at P
Figure 3. Changes in Root / Shoot DW ratio in eight cultivars of Medicago sativa during one<br />
month of treatment with appropriate water supply (open columns): 100% field capacity and 33%<br />
field capacity (dotted columns). Values are the means of ten replicates, vertical bars are SE.<br />
Values sharing a common latter are not significantly different at P
16256 Afr. J. Biotechnol.<br />
Figure 4. Changes in leaf proline concentrations in eight cultivars of Medicago sativa<br />
during one month of treatment with appropriate water supply (open columns): 100%<br />
field capacity and 33% field capacity (dotted columns). Values are the means of ten<br />
replicates, vertical bars are SE. Values sharing a common latter are not significantly<br />
different at P
Slama et al. 16257<br />
Figure 6. Changes in leaf MDA (malondialdehyde) concentrations (A) and electrolyte leakage (B)<br />
in eight cultivars of Medicago sativa during one month of treatment with appropriate water supply<br />
(open columns): 100% field capacity and 33% field capacity (dotted columns). Values are the<br />
means of ten replicates, vertical bars are SE. Values sharing a common latter are not significantly<br />
different at P
16258 Afr. J. Biotechnol.<br />
relations, showed the highest concentrations in proline. In<br />
the same context, it has been observed that there is<br />
higher proline content in drought-tolerant Sorghum as<br />
well as in Phaseolus species than in sensitive ones<br />
(Türken et al., 2005; Zaifnejad et al., 1997). Vendruscolo<br />
et al. (2007) showed also that proline concentration<br />
reached a high value under water deficit stress in Durum<br />
plants. The PEG-induced water deficit stress increased<br />
proline accumulation in alfalfa particularly in osmotic<br />
tolerant accession (Yazdi) suggesting a positive<br />
correlation between proline accumulation and osmotic<br />
stress tolerance. Proline accumulation differs between<br />
cultivars adapted to certain growth conditions or regions,<br />
as well as within species more or less tolerant to drought<br />
(Heuer, 1994). In maize primary root, for example, the<br />
proline level increased as much as a hundred fold under<br />
a low water potential (Voetberg and Sharp, 1991). The<br />
free proline level also increased <strong>from</strong> 4 to 40 times in pea<br />
in response to water deficit stress (Francisco et al.,<br />
1998). A positive correlation between proline accumulation<br />
and osmotic stress tolerance has been often<br />
established (Ashraf and foolad, 2007). The establishment<br />
of the kinetics of proline accumulation and enzyme (δ-<br />
OAT, PDH) activities showed that the increase of proline<br />
biosynthesis in plants subjected to water deficit was<br />
concomitant with a stimulation of the first enzyme and an<br />
inhibition of the second one (Slama et al., 2006). The<br />
accumulation of the proline is one of the adaptive<br />
responses frequently observed at the plants to limit the<br />
effects of drought. Proline accumulation under stress<br />
protects the cell by balancing the osmotic strength of<br />
cytosol with that of vacuole and external environment. In<br />
addition to its role as cytosolic osmotica, it may interact<br />
with cellular macromolecules such as enzymes and<br />
stabilize the structure and function of such macromolecules.<br />
Thus, this compound is often proposed as<br />
relevant tool for selection of plant species and varieties<br />
tolerant to the osmotic constraints (Ashraf and Foolad,<br />
2007).<br />
Water deficit stress induced the generation of reactive<br />
oxygen species (ROS) (Shao et al., 2005; Shao, 2008). It<br />
is now widely accepted that these cytotoxic ROS are<br />
responsible for various stress-induced damages to<br />
macromolecules mainly lipid membrane peroxidation<br />
which could be determined by measuring malondialdehyde<br />
(MDA). The high accumulation of MDA is<br />
often concomitant with water deficit stress sensitivity. The<br />
increase in lipid peroxidation observed in the leaves of<br />
Ecotipo sciciliano could be resulted <strong>from</strong> the ROS<br />
accumulation. The minor MDA variation observed in<br />
some Medicago cultivars suggests a better protection<br />
<strong>from</strong> oxidative damage. Electrolyte leakage following<br />
cellular membrane degradation indicated permeability<br />
degree and membrane stability (Prasil and Zambien,<br />
1998). The examination of the variation of electrolyte<br />
leakage variations showed that in spite of the high value<br />
of this parameter, Tamantit cultivar showed no significant<br />
differences when compared to control one. It is important<br />
to note that the cultivar showing the highest levels of<br />
proline is the least affected by the oxidative stress<br />
attributing an antioxidant feature to proline, suggesting<br />
ROS scavenging activity and proline acting as a singlet<br />
oxygen quencher (Szabados and savoué, 2009).<br />
In conclusion, variability in response to water deficit<br />
stress occurred among alfalfa seedlings. The root preferential<br />
development, the better ability to accumulate<br />
proline and soluble sugars, and the aptitude to protect<br />
photosynthetic apparatus against the oxidative stress are<br />
the main criteria that are associated with the relative<br />
tolerance of some cultivars.<br />
ACKNOWLEDGMENTS<br />
This work was supported by the Tunisian Ministry of<br />
Higher Education and Scientific Research<br />
(LR10CBBC02), by the Tunisian-French “Comité Mixte<br />
de Coopération Universitaire” (CMCU) network #<br />
08G0917 and by FP6 Project: Improvement of native<br />
perennial forage plants for sustainability of Mediterranean<br />
farming systems.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16260-16266, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1897<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Cloning and characterization of a thermostable 2deoxy-D-ribose-5-phosphate<br />
aldolase <strong>from</strong><br />
Aciduliprofundum boonei<br />
Xiaopu Yin, Qiuyan Wang, Shu-juan Zhao, Peng-fei Du, Kai-lin Xie, Peng Jin and Tian Xie*<br />
Center for Biomedicine and Health, Hangzhou Normal University, Hangzhou 310012, P. R. China.<br />
Accepted 30 September, 2011<br />
Analysis of the presumptive 2-deoxy-D-ribose 5-phosphate aldolase gene <strong>from</strong> Aciduliprofundum<br />
boonei revealed an open reading frame (ORF) encoding 222 amino acids, which was subcloned and<br />
then expressed in Escherichia coli. The recombinant DERA protein was purified to apparent<br />
homogeneity. The enzyme activity was optimal at pH 7.0 and 80C. For 2-deoxyribose-5-phosphate, the<br />
apparent Km was calculated to be 0.12 ± 0.01 mM. No loss of activity was observed after incubation at<br />
80C for 10 min. The enzyme was extremely stable over a wide range of pH levels. Moreover, the<br />
thermophilic enzyme also showed tolerance to acetaldehyde, which retained more than 70% activity<br />
after exposure for 4 h to 250 mM acetaldehyde at 25°C.<br />
Key words: 2-deoxy-D-ribose 5-phosphate aldolase (DERA), thermophiles, aldo condensation.<br />
INTRODUCTION<br />
Aldolases are used for stereospecific carbon-carbon<br />
bond formation, one of the most important transformations<br />
in industrial organic syntheses (Kim et al.,<br />
2009). According to the chemical mechanism, aldolases<br />
are divided into two classes: Class I aldolases are<br />
cofactor-independent and catalyzes carbon-carbon bond<br />
cleavage via the formation of a Schiff base intermediate<br />
with the sugar; Class II aldolases are dependent on a<br />
divalent metal ion that acts as a Lewis acid and activates<br />
the donor substrate (Morse and Horecker, 1968; Rutter,<br />
1964; Siebers et al., 2001; Sauve and Sygusch, 2001).<br />
Deoxyribose 5-phosphate aldolase (DERA, EC 4.1.2.4),<br />
one of the class I aldolases, constitutes the only member<br />
of the acetaldehyde-dependent aldolase family and is a<br />
powerful tool to generate chiral centers in the<br />
acetaldehyde adducts, which is the unique side chains of<br />
statins (Jennewein et al., 2006).<br />
Although, DERAs <strong>from</strong> many microorganisms such<br />
*Corresponding author. E-mail: tianxie.hznu@gmail.com. Tel:<br />
+86-571-28865630. Fax: +86-571-28865630.<br />
Abbreviations: DERA, 2-Deoxy-D-ribose 5-phosphate<br />
aldolase; DRP, 2-deoxy-D-ribose- 5-phosphate; ORF, open<br />
reading frame.<br />
as Bacillus cereus, E. coli K12, Klebsiella pneumoniae,<br />
Lactobacillus plantarum, Salmonella typhimurium,<br />
Streptococcus mutans GS-5, Yersinia sp. EA015,<br />
Aeropyrum pernix, Pyrobaculum aerophilum and<br />
Thermotoga maritime, have been studied (Gijsen and<br />
Wong, 1994; Sgarrella et al., 1992; Horinouchi et al.,<br />
2003; Pricer et al., 1960; Hoffee, 1968; Han et al., 2004;<br />
Kim et al., 2009; Sakuraba et al., 2003, 2007), it is<br />
generally limited by the poor resistance to a high<br />
concentration of aldehydes in industrial applications.<br />
Recently, enzymes isolated <strong>from</strong> microorganisms in<br />
extreme conditions have showed unique features. For<br />
example, they are extremely thermostable and usually<br />
resistant to chemical denaturants such as detergents,<br />
chaotropic agents and organic solvents (Burton et al.,<br />
2002; Cowan, 1997; Egorova and Antranikian, 2005;<br />
Antranikian et al., 2005; Hao and Berry, 2004). Therefore,<br />
it’s a practical strategy to obtain new DERAs <strong>from</strong><br />
thermophilic microorganisms for industrial applications.<br />
The hyperthermophilic A. boonei was isolated in 2006<br />
<strong>from</strong> deep-sea vent of the Pacific coast of South America<br />
(Reysenbach et al., 2006). The whole genome was<br />
sequenced, annotated and analyzed in 2008<br />
(Reysenbach and Flores, 2008). In this report, we cloned,<br />
expressed and characterized the DERA <strong>from</strong> thermophilic<br />
A. boonei. Purified recombinant DERA showed thermo-
stability and resistance to a high concentration of acetaldehydes<br />
which could be further used as the biocatalyst<br />
for industrial applications.<br />
MATERIALS AND METHODS<br />
The pET-303/CT-His vector was obtained <strong>from</strong> Novagen (Madison,<br />
WI, USA). The E. coli strain BL21-CodonPlus (DE3)-RIL was<br />
purchased <strong>from</strong> Stratagene (La Jolla, CA). 2-deoxy-D-ribose-5phosphate<br />
(DRP), triose-phosphate isomerase (TPI) and glycerol-3phosphate<br />
dehydrogenase (GPD) were purchased <strong>from</strong> Sigma (St.<br />
Louis, MO, USA). All other chemicals were of reagent grade.<br />
Gene cloning and multiple sequence alignment<br />
The nucleotide sequence encoding DERA <strong>from</strong> the thermophilic<br />
microorganism A. boonei was obtained <strong>from</strong> EMBL Nucleotide<br />
Sequence Database (http://www.ebi.ac.uk/embl/Access/). The DNA<br />
encoding full length DERA was synthesized by Sangon (China) and<br />
abbreviated as DERAAbo. The restriction sites of Xba I and Xho I<br />
were introduced at the 5' end and 3' end, respectively.<br />
The conserved residues in DERAAbo was identified by aligning the<br />
amino acid sequences of DERAs <strong>from</strong> representative thermophilic<br />
organisms A. pernix, P. aerophilum and T. maritime with<br />
CLUSTALX. The accession numbers of the sequences were as<br />
follows: A. boonei, B5IEU6; A. pernix, Q9Y948; P. aerophilum,<br />
Q8ZXK7 and T. maritima, Q9X1P5, which were obtained <strong>from</strong><br />
UniProtKB /TrEMBL Database.<br />
Protein expression, purification and molecular mass<br />
determination<br />
The expression vector carrying desired DERA sequence was<br />
transformed into the E. coli strain BL21-CodonPlus (DE3)-RIL. The<br />
transformant in culture medium containing 100mg/L ampicillin was<br />
grown to OD600 = 0.8. Then IPTG was added to the final<br />
concentration of 1.0 mM. After induction at 37°C for 8.5 h in the<br />
conical flask, the bacteria were collected and lysed. The<br />
supernatant was incubated with Ni-NTA agarose (Qiagen, Hilden,<br />
Germany) for 1 h at 4°C, and the mixture was loaded onto a<br />
chromatography column. The column was washed with buffer<br />
containing 100 mM sodium phosphate (pH 7.5), 200 mM sodium<br />
chloride, and 10 mM imidazole. The His-tag DERA was eluted <strong>from</strong><br />
the column with the same buffer containing 500 mM imidazole. The<br />
protein was dialyzed overnight against 20 mM sodium phosphate<br />
(pH 7.5) and concentrated with polyethylene glycol (PEG) 20000,<br />
then freeze-dried. Enzyme powders were stored at -20°C. The<br />
results were analyzed by 12% SDS-PAGE and the protein<br />
concentration was determined by the Bradford method with bovine<br />
serum albumin as the standard.<br />
The molecular mass of the purified enzyme was determined by<br />
analytical gel filtration on a Superdex 200 column (2.6 × 62 cm;<br />
Amersham Biosciences) and pre-equilibrated with 50mM Tris-HCl<br />
buffer (pH 8.0) containing 0.2 M NaCl. The molecular mass of<br />
DERA was compared with the retention time of four standard<br />
proteins including lysozyme (14 kDa), chymotrypsin (25 kDa),<br />
maltose binding protein (43 kDa) and bovine serum albumin (68<br />
kDa).<br />
Enzyme activity assay<br />
The DERA cleavage activity was measured by following the<br />
oxidation of NADH in a coupled assay converting glyceraldehyde-3-<br />
Yin et al. 16261<br />
phosphate, one of DRP cleavage products, to glycerol 3-phosphate<br />
by TPI and GDP. The DRP cleavage reaction was carried out at<br />
50°C for 5 min and then DERA was removed <strong>using</strong> a centrifugal<br />
filter device (Microcon YM-10; Millipore). Reduction was carried out<br />
at 25°C for 30 min. The reaction mixture in a total volume of 400 µl,<br />
contained 100 mM sodium acetate buffer (pH 5.5), 0.1 mM NADH,<br />
0.4 mM DRP, 11 U triose-phosphate isomerase, 4 U glycerol-3phosphate,<br />
and various concentrations of DERAAbo. The change in<br />
absorbance of NADH was monitored at 340 nm (ε = 6.22 mM -1 cm -<br />
1 ).<br />
The unit (U) activity was defined as the amount of DERA required to<br />
catalyze the cleavage of 1 μmol of DRP per minute. Kinetic<br />
properties of DERA were examined in 100 mM sodium acetate<br />
buffer (pH 5.5). Five concentrations of DRP, ranging <strong>from</strong> 0.04 to<br />
0.4 mM were used to determine reaction rates. The apparent<br />
Michaelis-Menten constant for DRP cleavage reactions was<br />
determined <strong>from</strong> the double reciprocal Lineweaver-Burk plots of the<br />
reaction rate.<br />
Effects of pH on enzyme activity and stability<br />
The buffers used to determine the effects of pH were sodium<br />
acetate (0.1 M, pH 3.0 to 6.0), imidazole-HCl (0.1 M, pH 6.0 to 7.5),<br />
triethanolamine-HCl (0.1 M, pH 7.5 to 8.5), glycine-NaOH (0.1 M,<br />
pH 8.5 to 11.0) and Na2HPO3-NaOH (0.1 M, pH 11.0 to 13.0). The<br />
optimum pH for DERA was determined by analysis of DRP<br />
cleavage in pH <strong>from</strong> 4.0 to 10.0. The effect of pH on enzyme<br />
stability was determined by comparing the relative activity of the<br />
enzyme (at 0.5 mg/ml) incubated in pH ranging <strong>from</strong> 2.0 to 13.0 at<br />
50°C for 30 min.<br />
Effects of temperature on enzyme activity and stability<br />
The optimum temperature of DERA was measured <strong>using</strong> the DRP<br />
cleavage assay with a slight modification. After the reaction mixture<br />
containing 100 mM sodium acetate buffer (pH 5.5), 0.4 mM DRP,<br />
and a known concentration of DERA was incubated in the range of<br />
30 to 100°C for 1 min, DERA was removed. The reduction reaction<br />
was then carried out at 25°C for 30 min in the presence of TPI and<br />
GPD and the decrease of NADH was monitored. To determine the<br />
effect of temperature on enzyme stability, DERA (0.5 mg/ml) was<br />
incubated for 10 min at different temperatures, and the residual<br />
activities were assayed.<br />
Effects of acetaldehyde on enzyme stability<br />
To examine the effect of acetaldehyde on enzyme stability, 0.5<br />
mg/ml DERA in 10 mM Tris-HCl (pH 7.0) containing 50, 150 and<br />
250 mM acetaldehyde, respectively was incubated at 25°C for<br />
various intervals. The acetaldehyde was removed <strong>from</strong> the enzyme<br />
solution <strong>using</strong> a centrifugal filter device (Microcon YM-10, Millipore).<br />
The resulting DERA was diluted to 0.2 mg/ml with 100 mM sodium<br />
acetate (pH 5.5) and the residual activity was analyzed.<br />
RESULTS AND DISCUSSION<br />
Cloning, expression and purification<br />
To over-express the PCR-amplified gene, the vector pET-<br />
303/CT-His was selected for the correct orientation of the<br />
oligonucleotide sequence and desired reading frame. The<br />
constructed plasmid pET-DERAAbo was confirmed by
16262 Afr. J. Biotechnol.<br />
Figure 1. SDS-PAGE analysis of recombinant DERA <strong>from</strong> A. boonei. (A) M, molecular weight maker; Lane 1, uninduced crude extract; lane 2,<br />
induced crude extract; lane 3, purified DERAAbo after Ni-NTA affinity chromatography. (B) Gel filtration analysis of recombinant DERA: molecular<br />
mass of DERA was compared with the values of retention time of lysozyme (14 kDa), chymotrypsin (25 kDa), maltose binding protein (43 kDa)<br />
and bovine serum albumin (68 kDa).<br />
DNA sequencing. Finally, the plasmid was used for the<br />
transformation of E. coli BL21-CodonPlus (DE3)-RIL.<br />
The recombinant protein with His-tag was purified to<br />
homogeneity <strong>using</strong> a Ni-NTA column. The molecular<br />
weight of the protein calculated <strong>from</strong> the deduced amino<br />
acid sequence was 26.6 kDa. The apparent size of the<br />
protein was in good agreement with the calculated<br />
molecular weight (Figure 1A). The native molecular mass<br />
of the enzyme determined by gel filtration is about 53 kDa<br />
(Figure 1B), which indicated that the enzyme consists of<br />
two subunits with identical molecular mass. The DERA<br />
<strong>from</strong> E. coli also has a dimer structure (Protein Data Bank<br />
code 1JCL) composed of two identical subunits, which is<br />
most common for DERA (Sakuraba et al., 2003).<br />
Multiple sequence alignment<br />
The DERAAbo protein was aligned with representative<br />
DERA proteins of thermophilic microorganisms, including<br />
A. pernix (Q9Y948), P. aerophilum (Q8ZXK7) and T.<br />
maritima (Q9X1P5), whose catalytic sites have been<br />
confirmed. It was found that the residue Lys127 of<br />
DERAAbo was highly conserved in the DERAs, which was<br />
essential in forming the Schiff-base with the aldehydic<br />
substrate. Furthermore, the residues Asp92 and Lys185<br />
were also highly conserved in DERAs (Figure 2), which<br />
were known to be important in proton relays (Sakuraba et<br />
al., 2007).<br />
Optimum pH and pH stability<br />
Optimum pH and pH stability of the purified recombinant<br />
DERAAbo were studied <strong>using</strong> DRP as a substrate. With<br />
the standard assay method, the highest activity was<br />
obtained at pH 7.0 and more than 75% activity remained<br />
between pH 6.5 and 7.5 (Figure 3A), which is similar with<br />
DERAs <strong>from</strong> P. aerophilum and T. maritima. The stability<br />
of the enzyme after incubation at various pH values is<br />
shown in Figure 3B. After heating at pH levels ranging<br />
<strong>from</strong> 4.0 to 11.0 for 30 min at 50°C, only a few loss of<br />
activity was found. DERAAbo was extremely stable over a<br />
wide range of pH levels, which suggested that it will be<br />
stable in industrial processes under different pH<br />
conditions.<br />
Optimum temperature and thermal stability<br />
The effect of temperature on enzyme activity at pH 7.0 is<br />
shown in Figure 4. The highest activity was observed at<br />
80°C. The activity sharply decreased below and above<br />
80°C. The thermal stability of DERA was determined after<br />
incubation at different temperatures. After heating at<br />
80C for 10 min, no loss of activity was observed for<br />
DERAAbo (Figure 4). Even after incubation at 90°C for 10
Yin et al. 16263<br />
Figure 2. Amino acid sequence alignment of DERAs <strong>from</strong> A. boonei (B5IEU6), A. pernix (Q9Y948), P. aerophilum (Q8ZXK7) and T. maritime<br />
(Q9X1P5). Gaps, indicated by dashes, were introduced into the sequences to maximize homology. Residues important for catalysis as<br />
discussed in the text are shown in triangles.<br />
min, the enzyme retained about 60% residual activity.<br />
These results show that DERAAbo is a remarkably thermal<br />
stable enzyme.<br />
Basic kinetic constants for DERAAbo<br />
Initial rate kinetics for the aldol cleavage reaction with<br />
DERAAbo was determined with various concentrations of<br />
DRP by fitting the data to the Michaelis-Menten equation.<br />
The apparent Km value of the enzyme was 0.12 ± 0.01<br />
mM, which is lower than that of E. coli DERA (Gijsen and<br />
Wong, 1994) and higher than those of T. maritima and P.<br />
aerophilum DERA (Sakuraba et al., 2003, 2007).<br />
Compared to the mesophilic DERA <strong>from</strong> Yersinia sp. with<br />
Km value of 9.1 mM, the reported thermophilic DERAs<br />
have significantly higher substrate affinity.<br />
Effects of acetaldehyde on enzyme stability<br />
DERAAbo retained more than 70% DRP cleavage activity<br />
after exposure for 4 h to 250 mM acetaldehyde at 25°C,<br />
and over 80% activity under the condition of 50/150 mM<br />
acetaldehyde (Figure 5). No further loss of activity was<br />
observed after 1 h as most of the acetaldehyde was<br />
converted to lactol. These results indicate that the<br />
enzyme was resistant to acetaldehyde of high<br />
concentration and that acetaldehyde could be used to<br />
obtain the side chain of statine with the enzymes.<br />
Thermophilic DERAs <strong>from</strong> P. aerophilum and T. maritime<br />
also showed a significant resistance to high concentration<br />
acetaldehyde, retaining high activity after exposure for<br />
hours to 300 mM acetaldehyde. In contrast, the<br />
mesophilic counterpart DERA <strong>from</strong> E. coli is almost<br />
completely inactivated after exposure to acetaldehyde for<br />
2 h under the same conditions (Sakuraba et al., 2007).<br />
The results supported the hypothesis that thermostable<br />
DERAs are promising candidates for industrial<br />
applications (Burton et al., 2002; Cowan, 1997; Egorova<br />
and Antranikian, 2005), as the key issue faced in statin<br />
synthesis is poor tolerance of DERA toward high<br />
concentrations of acetaldehyde substrate.<br />
In conclusion, we reported the cloning, expression and<br />
characterization of DERA <strong>from</strong> A. boonei. DERAAbo<br />
showed broad pH adaptability, remarkable thermostability<br />
and high stability to high concentrations of acetaldehyde.<br />
We expect that DERAAbo will be useful in manufacturing<br />
settings where high concentrations of acetaldehyde are<br />
necessary. Currently, we are investigating the use of<br />
DERAAbo in the synthesis of statin side chains and this<br />
data will be reported in due course.<br />
ACKNOWLEDGEMENTS<br />
The work was supported by Major Science and<br />
Technology Project of Hangzhou (20092113A03), Normal<br />
Science Project of Zhejiang Province (2009C31086),<br />
National Natural Science Foundation of China<br />
(20906016, 20675022, 30900253, 21006018), Natural<br />
Science Foundation of Zhejiang Province (Y4080317),
16264 Afr. J. Biotechnol.<br />
Relative activity(%)<br />
Relative activity(%)<br />
A<br />
B<br />
100<br />
80<br />
60<br />
40<br />
20<br />
120<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
0<br />
4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0<br />
Figure 3. Optimum pH and pH stability of A. boonei DERA. (A) The optimum pH was performed at a<br />
variety of pH levels by determining cleavage of the DRP at 25°C. (B) The enzyme was incubated for<br />
30 min at 50°C in buffers of various pH levels, after which the remaining activity was assayed.<br />
pH<br />
0 2 4 6 8 10 12 14<br />
pH
Relative activity(%)<br />
Relative activity(%)<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
30 40 50 60 70 80 90 100<br />
Temperature( C )<br />
Figure 4. Effects of temperature on activity (●) and stability (■) of A. boonei DERA. Effect of<br />
temperature was determined <strong>using</strong> imidazole-HCl buffer (0.1 M, pH 7.0). Thermostability was<br />
determined after incubation for 10 min at the indicated temperatures in imidazole-HCl buffer (0.1<br />
M, pH 7.0).<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
activity(%)<br />
activity(%)<br />
0 1 2 3 4<br />
Time (h)<br />
Figure 5. Effect of acetaldehyde on enzyme stability. The enzyme was incubated at 25°C in the<br />
presence of 50 mM(■),150 mM(▲) and 250 mM(●) acetaldehyde, respectively and the DRP<br />
cleavage activity was assayed at appropriate intervals.<br />
Yin et al. 16265
16266 Afr. J. Biotechnol.<br />
and Technology Research and Development Program for<br />
Institue of Hangzhou (20090331N03, 20101131N03).<br />
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Burton SG, Cowan DA, Woodley JM (2002). The search for the ideal<br />
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Cowan DA (1997). Thermophilic proteins: stability and function in<br />
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118: 429-438.<br />
Egorova K, Antranikian G (2005). Industrial relevance of thermophilic<br />
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Gijsen HJM, Wong CH (1994). Unprecedented Asymmetric Aldol<br />
Reactions with Three Aldehyde Substrates Catalyzed by 2-<br />
Deoxyribose-5-phosphate Aldolase. J. Am. Chem. Soc. 116: 8422-<br />
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Han TK, Zhu Z, Dao ML (2004). Identification, molecular cloning, and<br />
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Hao J, Berry A (2004). A thermostable variant of fructose bisphosphate<br />
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Mikami Y, Shimizu S (2003). Construction of deoxyriboaldolaseoverexpressing<br />
Escherichia coli and its application to 2-deoxyribose<br />
5-phosphate synthesis <strong>from</strong> glucose and acetaldehyde for 2'deoxyribonucleoside<br />
production. Appl. Environ. Microbiol. 69: 3791-<br />
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Jennewein S, Schürmann M, Wolberg M, Hilker I, Luiten R, Wubbolts<br />
M, Mink D (2006). Directed evolution of an industrial biocatalyst: 2deoxy-D-ribose<br />
5-phosphate aldolase. Biotechnol. J. 1(5): 537-548.<br />
Kim YM, Chang YH, Choi NS, Kim YO, Song JJ, Kim JS (2009).<br />
Cloning, expression, and characterization of a new deoxyribose 5phosphate<br />
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68: 196-200.<br />
Morse DE, Horecker BL (1968). The mechanism of action of aldolases.<br />
Adv. Enzymol. Relat. Areas. Mol. Biol. 31: 125-181.<br />
Pricer WE Jr, Horecker BL (1960). Deoxyribose aldolase <strong>from</strong><br />
Lactobacillus plantarum. J. Biol. Chem. 235: 1292-1298.<br />
Reysenbach AL, Flores GE (2008). Electron microscopy encounters<br />
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Aciduliprofundum boonei. Geobiology, 6(3): 331-336.<br />
Reysenbach AL, Liu Y, Banta AB, Beveridge TJ, Kirshtein JD, Schouten<br />
S, Tivey MK, Von Damm K, Voytek MA (2006). Isolation of a<br />
ubiquitous obligate thermoacidophilic archaeon <strong>from</strong> deep-sea<br />
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Rutter WJ (1964). Evolution of aldolase. Fed. Proc. 23: 1248-1257.<br />
Sakuraba H, Tsuge H, Shimoya I, Kawakami R, Goda S, Kawarabayasi<br />
Y, Katunuma N, Ago H, Miyano M, Ohshima T (2003). The first crystal<br />
structure of archaeal aldolase. Unique tetrameric structure of 2deoxy-d-ribose-5-phosphate<br />
aldolase <strong>from</strong> the hyperthermophilic<br />
archaea Aeropyrum pernix. J. Biol. Chem. 278: 10799-10806.<br />
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Sgarrella F, Del Corso A, Tozzi MG, Camici M (1992). Deoxyribose 5phosphate<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16267-16276, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2036<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Isolation and characterization of a bacterial celluloseproducing<br />
bacterium derived <strong>from</strong><br />
the persimmon vinegar<br />
Young-Jung Wee 1 *, Soo-Yeon Kim 2 , Soon-Do Yoon 3 and Hwa-Won Ryu 2 *<br />
1 Department of Food Science and Technology, Yeungnam University, Gyeongsan, Gyeongbuk 712-749, Republic of<br />
Korea.<br />
2 School of Biological Sciences and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea.<br />
3 Faculty of Applied Chemical Engineering, Chonnam National University, Gwangju 500-757, Republic of Korea.<br />
Accepted 7 October, 2011<br />
A novel cellulose-producing organism was isolated <strong>from</strong> the liquid part of a 3-year ripened persimmon<br />
vinegar, which belonged to the family of Acetobacteracea based on its morphological and physiological<br />
characteristics. The phylogenetic position of the isolated strain was most closely related to<br />
Gluconacetobacter intermedius TF2 T (99.929%), hence, it was specifically named as Gluconacetobacter<br />
sp. RKY5. Although the traditional bacterial cellulose (BC) production medium (Hestrin and Schramm<br />
medium) was used, the amount of BC produced under a static culture condition reached 5.0 g L -1 . The<br />
X-ray diffraction pattern and scanning electron micrograph of the BC produced revealed that it was<br />
composed of ribbon-shaped fibrils with the network structure and pure cellulose without any other<br />
impurities.<br />
Key words: Bacterial cellulose, Gluconacetobacter; 16S rRNA gene sequence analysis, phylogeny, persimmon<br />
vinegar.<br />
INTRODUCTION<br />
Bacterial cellulose (BC) is widely used in the traditional<br />
dessert ‘nata de coco’, a food product of the Philippines,<br />
and it was first confirmed as cellulose in 1886 (Keshk et<br />
al., 2006; Kuga and Brown, 1988). The BC, a biopolymer<br />
produced by several strains of acetic acid bacteria, has<br />
same chemical structure compared to plant-derived<br />
cellulose, which is a homogeneous polymer composed of<br />
β-1,4-glycosidic linkages between the glucose molecules<br />
(Ross et al., 1991; Watanabe et al., 1998). Paper and<br />
textile industries require a significant amount of the plantderived<br />
cellulose, which leads to a considerable demand<br />
on wood biomass (Vamdamme et al., 1998). Thus, the<br />
production of BC could be an interesting substitute for the<br />
plant-derived cellulose. The BC is distinguished <strong>from</strong> the<br />
plant-derived cellulose by its high degree of poly-<br />
*Corresponding author. E-mail: yjwee@ynu.ac.kr,<br />
hwryu@chonnamac.kr. Tel: +82-53-810-2951, +82-62-530-<br />
1842. Fax: +82-53-810-4662.<br />
merization, high purity, its high water-holding capacity<br />
and free <strong>from</strong> lignin and hemicellulose (Yoshinaga et al.,<br />
1997; Shoda and Sugano, 2005; Son et al., 2003). In<br />
addition, BC has high polymer crystallinity and excellent<br />
physicochemical characteristics superior to the plantderived<br />
cellulose (Guhados et al., 2005), which makes<br />
the BC an ideal material for a wide variety of applications.<br />
There are many commercial applications of the BC such<br />
as audio headphone diaphragm, additives for food and<br />
paper products, and thickener for paint (Huang et al.,<br />
2010; Iguchi et al., 2000; Ross et al., 1991; Vandamme et<br />
al., 1998; Yamanaka et al., 1989). Presently, the BC finds<br />
its potential applications in biomedical industries such as<br />
skin substitute for wound dressing, scaffold material for<br />
tissue engineering and tissue repair (Christner et al.,<br />
1999; Czaja et al., 2006; Suehiro et al., 2007; Svensson<br />
et al., 2005).<br />
The BC was produced traditionally by acetic acid<br />
bacteria which were classified into four genera based on<br />
their 16S rRNA gene sequences. The four genera of<br />
acetic acid bacteria include Acetobacter, Acidomonas,
16268 Afr. J. Biotechnol.<br />
Gluconobacter, and Gluconacetobacter (Yamada et al.,<br />
1997). Although the taxonomic classification of acetic acid<br />
bacteria is still a subject of controversy, the species of the<br />
genus Gluconacetobacter (formerly Acetobacter) is one<br />
of the most frequently characterized acetic acid bacteria<br />
for BC production (Yeo et al., 2004). Another minor BC<br />
producers include the genera Agrobacteria, Rhizobia,<br />
and Sarcina, but the acetic acid bacteria like the genus<br />
Gluconacetobacter have been mainly employed for BC<br />
production as they have superior BC production ability to<br />
other BC producers (Jung et al., 2005). Recently, the<br />
mass production of BC by Gluconacetobacter species<br />
has been extensively studied, but the current production<br />
cost of the BC remains too high to make it commercially<br />
available and the production titer of the BC reported so<br />
far is relatively low (Vandamme et al., 1998).<br />
The present study shows a novel BC-producing<br />
bacterium isolated <strong>from</strong> the Korean traditional persimmon<br />
vinegar, which has high ability to produce BC. The<br />
isolated strain was morphologically, physiologically or<br />
biochemically, and phylogenetically characterized. An<br />
attempt was also made to elucidate the properties of the<br />
BC produced by the isolated strain compared to the plantderived<br />
cellulose.<br />
MATERIALS AND METHODS<br />
Isolation of the bacterial cellulose producer<br />
The BC-producing bacteria were isolated according to the method<br />
described by Son et al. (2002). The parts of liquid and solid of the<br />
Korean traditional persimmon vinegar ripened for 1, 2 and 3 years<br />
were inoculated into Hestrin and Schramm (HS) medium (pH 6.0)<br />
which contained 20 g L -1 glucose, 5 g L -1 yeast extract, 5 g L -1<br />
peptone, 2.7 g L -1 Na2HPO4 and 1.15 g L -1 citric acid monohydrate<br />
(Hestrin and Schramm, 1954), and they were incubated statically at<br />
30°C. The culture broth in which a lot of pellicles were formed was<br />
transferred to the fresh HS medium, and it was incubated at 30°C<br />
for 1 week. The supernatant of culture broth which formed the<br />
highest amount of bacterial cellulose was selected. The resultant<br />
broth was then plated on MRS agar medium containing 10 g L -1<br />
peptone, 10 g L -1 beef extract, 5 g L -1 yeast extract, 20 g L -1 glucose,<br />
1 g L -1 polysorbate 80, 5 g L -1 ammonium citrate, 5 g L -1 sodium<br />
acetate, 0.1 g L -1 MgSO4, 0.1 g L -1 MnSO4, 2 g L -1 K2HPO4 and 20 g<br />
L -1 agar. Nine colonies were selected and inoculated to the HS<br />
medium. The most potent bacterial cellulose producer was selected<br />
and designated RKY5.<br />
Culture conditions and biochemical characteristics<br />
The isolated strain RKY5 was kept on 50% (v/v) glycerol at -70°C,<br />
and 1% of this stock was inoculated into 50 ml HS medium in a<br />
250-ml Erlenmeyer flask, which was incubated at 30°C and 150<br />
rpm for 48 h on a rotary shaker (KMC-8480SF; Vision Scientific Co.,<br />
Daejeon, Korea). The culture flask was shaken vigorously to<br />
release the cells <strong>from</strong> the cellulose pellicles. The cell suspension<br />
was then filtered with the 12 layers of sterilized gauge, and 2% (v/v)<br />
of the filtrate was used as an inoculum for BC production.<br />
The biochemical characteristics of the isolated strain were<br />
determined according to the Bergey’s Manual of Systematic<br />
Bacteriology (De Ley et al., 1984). The ability of oxidation of<br />
ethanol, acetate, and lactate was investigated. The oxidation of<br />
ethanol into acetic acid was confirmed by observing the color<br />
change of Carr medium which was composed of 20 ml L -1 ethanol,<br />
30 g L -1 yeast extract, 0.022 g L -1 bromocresol green and 20 g L -1<br />
agar. A medium composed of sodium acetate or sodium lactate (2 g<br />
L -1 ), peptone (3 g L -1 ), bromothymol blue (0.02 g L -1 ) and agar (20 g<br />
L -1 ) was utilized to check the oxidation of lactate and acetate, as the<br />
color of the medium changes <strong>from</strong> yellow to green when lactate or<br />
acetate is oxidized. The isolated strain was cultured statically at<br />
30°C for 5 to 7 days in the GYC agar medium containing 5 g L -1<br />
glucose, 5 g L -1 yeast extract, 5 g L -1 CaCO3, and then the<br />
formation of water-soluble brown pigments was investigated. In<br />
order to evaluate ketogenesis <strong>from</strong> glycerol, the isolate strain was<br />
incubated at 30°C for 3 to 5 days in the YEG agar medium which<br />
contained 10 g L -1 yeast extract, 30 g L -1 glycerol and 20 g L -1 agar.<br />
The ketogenesis <strong>from</strong> glycerol can be confirmed by the addition of a<br />
few drops of Fehling’s solution to the medium, as the color of the<br />
medium changes to orange.<br />
PCR amplification and sequencing of 16S rRNA gene<br />
Two universal oligonucleotide primers, 27f (5’-AGAGTTTGAT<br />
CMTGGCTCAG-3’) and 1542r (5′-AGAAAGGAGGTGATCCAGCC-<br />
3′), were used for amplification of the 16S rRNA gene. The PCR<br />
amplifications were conducted in a reaction mixture containing 0.2<br />
mM dNTP, 0.4 µM each primer, 5 µl 10× PCR buffer, 1.5 mM MgCl2<br />
and 1 U Taq DNA polymerase. The amplified gene products were<br />
purified and subcloned into the plasmid pCR 2.1-TOPO (Invitrogen,<br />
Life Technologies, CA, USA) transformed into the competent cells,<br />
DH5α. The colorless transformants with the recombinant plasmids<br />
were selected <strong>using</strong> X-gal-containing medium and confirmed by<br />
their insert size. The restriction pattern of the cloned DNA<br />
sequencing of both DNA strands of clones was carried out<br />
according to the dideoxy chain termination method (Sanger et al.,<br />
1977). DNA sequencing was conducted on an ABI PRISM 377<br />
automatic DNA sequencer (Perkin-Elmer, Boston, MA, USA).<br />
Phylogenetic analysis<br />
The 16S rRNA gene sequence of the isolated strain was aligned<br />
with the 16S rRNA gene sequences of Gluconacetobacter species<br />
and other related taxa <strong>using</strong> CLUSTAL X software (ver. 1.8). The<br />
sequences of the related taxa were obtained <strong>from</strong> the GeneBank<br />
database. The nucleotide sequences of the type strains were<br />
available under their accession numbers. The similarity values of<br />
the 16S rRNA gene sequences were calculated <strong>from</strong> the multiple<br />
alignments. The software package MEGA (ver. 5.0) was used to<br />
construct phylogenetic tree through the neighbor-joining method.<br />
The stability of the relationships was assessed by a bootstrap<br />
analysis of 1,000 data sets.<br />
Analytical methods<br />
The cell growth was determined by measuring the optical density at<br />
660 nm <strong>using</strong> a UV-1600 spectrophotometer (Shimadzu, Kyoto,<br />
Japan) after the culture broth was treated with 0.1% (v/v) cellulase<br />
(Celluclast; Novo Nordisk A/S, Denmark). The samples were<br />
incubated at 50°C with shaking at 200 rpm for 3 h to hydrolyze the<br />
BC completely. The dry cell weight (g L -1 ) was then calculated <strong>using</strong><br />
a standard curve of the relationship between the optical density and<br />
dry cell weight. The gelatinous cellulose pellicle on the surface of<br />
the static culture was picked up with tweezers. After the BC was<br />
separated <strong>from</strong> the culture broth, the pellicles were washed with tap<br />
water to eliminate the medium components, and treated with 0.3 M<br />
NaOH at 80°C for 20 min to lyse the cells. The solution was then
Table 1. Isolation of BC producer <strong>from</strong> the persimmon vinegar.<br />
Sample (persimmon vinegar)<br />
Sampling part Ripen year<br />
Liquid<br />
Solid<br />
BC production<br />
1 +*<br />
2 ++**<br />
3 +++***<br />
1 +<br />
2 +<br />
3 nd****<br />
* 0.1 to 0.5 g L -1 ; ** 0.6 to 1.0 g L -1 ; *** 1.1 to 2.5 g L -1 ; **** not detected<br />
filtered to remove the dissolved materials, and the resultant filter<br />
cake was repeatedly washed with deionized water until the pH of<br />
the filtrate became neutral. The purified BC was dried at 80°C until<br />
a constant weight was obtained. The residual glucose concentration<br />
was determined quantitatively by the enzymatic reactions of<br />
glucose oxidase-peroxidase <strong>using</strong> a glucose reagent kit (Asan<br />
Pharmaceutical, Seoul, Korea). All analyses were carried out in<br />
triplicate and the mean values were presented.<br />
Furthermore, x-ray diffractograms were recorded <strong>using</strong> an X’Pert<br />
Pro multi-purpose X-ray diffractometer at 30 V and 25 mA to<br />
facilitate an indirect comparison of the BC with filter paper<br />
(Advantec, Dublin, CA, USA) as commercial plant-derived cellulose.<br />
Scans were performed over the 5-40° (2 ) range <strong>using</strong> step 0.1° in<br />
width. The samples were fixed with 2% (w/v) glutaraldehyde and<br />
0.5% (w/v) osmium tetroxide, which were dehydrated in a graded<br />
ethanol and then critical point-dried. The samples were coated with<br />
gold (JFC-1100, Jeol, Tokyo, Japan), which were then observed<br />
<strong>using</strong> a scanning electron microscope (JSM-5400, Jeol) at 20 kV.<br />
The morphological properties of the isolated strain were examined<br />
according to the Bergey’s Manual of Systematic Bacteriology (De<br />
Ley et al., 1984).<br />
RESULTS AND DISCUSSION<br />
Isolation of a bacterial cellulose producer <strong>from</strong> the<br />
persimmon vinegar<br />
The samples were picked <strong>from</strong> the liquid and solid parts<br />
of persimmon vinegar which was ripened for 1, 2 and 3<br />
years (Table 1). The BC pellicles were observed <strong>from</strong> five<br />
samples except 3-year ripened solid part of the<br />
persimmon vinegar. Nine colonies were obtained <strong>from</strong> the<br />
3-year ripened liquid part which resulted in the most<br />
thickness BC pellicle. The abundance of BC pellicle in the<br />
liquid part might be observed because the oxygen uptake<br />
rate in the liquid part of the persimmon vinegar should be<br />
more favorable than the solid part. Those isolates were<br />
examined for BC production <strong>using</strong> the HS medium, and<br />
the strain RKY5 was used in the subsequent studies as it<br />
showed the best BC productivity.<br />
Morphological and physiological characteristics of<br />
the isolated strain<br />
The isolated strain RKY5 was found to be Gram-<br />
Wee et al. 16269<br />
negative, non-spore forming and non-motile. The cells<br />
had rod shape measuring 0.6 to 0.8 × 1.0 to 2.0 µm and<br />
occurred singly, in pairs or in chains (Table 2). The<br />
colonies of the strain RKY5 cultured on GYC agar were<br />
pale white, smooth to rough, opaque and approximately 2<br />
to 3 mm in diameter.<br />
The isolated strain RKY5 was biochemically identified<br />
<strong>using</strong> an API 20E system (bioMérieux, France) according<br />
to the manufacturer’s instructions. The biochemical<br />
properties of the isolated strain RKY5 and the control<br />
strain Acetobacter xylinum are shown in Table 2. The<br />
strain RKY5 oxidized acetate and lactate into CO2 and<br />
H2O, but the oxidase test was negative. The strain RKY5<br />
exhibited positive reaction for catalase test and the<br />
formation of cellulose, but a negative reaction for the<br />
formation of brown pigment. It produced acid <strong>from</strong> the<br />
substrates such as glucose, mannitol, sucrose,<br />
amygdalin, and arabinose. A negative reaction was<br />
recorded for urease, indole, ONPG, gelatin liquefaction,<br />
H2S, lysine decarboxylase, arginine dehydrolase, acetoin<br />
production, and citrate utilization. A positive reaction was<br />
observed for over-oxidation of ethanol and ketogenesis<br />
<strong>from</strong> glycerol. Most biochemical tests showed similar<br />
results as in the control strain according to the Bergey’s<br />
Manual of Systematic Bacteriology (De Ley et al., 1984),<br />
which suggested that the isolated strain RKY5 should be<br />
classified into the group of acetic acid bacteria,<br />
Acetobacteracea.<br />
Phylogenetic analysis<br />
The 16S rRNA gene sequences of 1,406 nucleotides<br />
were determined for the isolated strain RKY5, which was<br />
deposited to GenBank as an accession number of<br />
HQ848659. The sequence was compared with several<br />
related taxa in the NCBI database, and the similarity<br />
index compared with the related taxa is shown in Table 3.<br />
G. intermedius TF2 T and G. oboediens DSM 11826 T<br />
showed the highest similarity (99.929 and 99.858%,<br />
respectively) to the isolated strain RKY5. Figure 1 shows<br />
the phylogenetic tree derived <strong>from</strong> the 16S rRNA gene<br />
sequences of 29 type-strains, which revealed that the
16270 Afr. J. Biotechnol.<br />
Table 2. Morphological and physiological characteristics of the isolated strain.<br />
Characteristic Acetobacter xylinum*<br />
Isolated strain<br />
Cell size (µm) 0.6 - 0.8 × 1.0 - 3.0 0.6 - 0.8 × 1.0 - 2.0<br />
Cell shape Ellipsoidal to rod Rod<br />
Arrangement of cells Singly, in pairs, in chains Singly, in pairs, in chains<br />
Motility -** -<br />
Gram staining - or variable -<br />
Catalase +*** +<br />
Urease - -<br />
Cytochrome oxidase - -<br />
ONPG ( -galactosidase) - -<br />
Gelatin liquefaction - -<br />
Arginine dehydrolase - -<br />
Lysine decarboxylase - -<br />
Indole production - -<br />
H2S production - -<br />
Acetoin production - -<br />
Citrate utilization - -<br />
Oxidation of:<br />
glucose + +<br />
mannitol + +<br />
inositol - -<br />
sorbitol - -<br />
rhamnose - -<br />
sucrose + +<br />
melibiose - -<br />
amygdalin + +<br />
arabinose + +<br />
Ketogenesis <strong>from</strong> glycerol + +<br />
Formation of cellulose + +<br />
Formation of brown pigment - -<br />
Overoxidation of ethanol + +<br />
Oxidation of:<br />
lactate + +<br />
acetate + +<br />
*Bergey’s Manual of Determinative Bacteriology (De Ley et al., 1984); ** negative; *** positive.<br />
strain RKY5 was a member of the genus<br />
Gluconacetobacter and most closely related to G.<br />
intermedius TF2 T and G. oboediens DSM 11826 T . As in<br />
the physiological characteristics, it was clear that the<br />
strain RKY5 was a member of the family<br />
Acetobacteracea and the genus Gluconacetobacter.<br />
Consequently, the isolated strain RKY5 was named as<br />
Gluconacetobacter sp. RKY5 for further studies, which<br />
was deposited to the Korean Collection for Type Cultures<br />
as KCTC 10683BP.<br />
Bacterial cellulose production by Gluconacetobacter<br />
sp. RKY5<br />
The production of BC by Gluconacetobacter sp. RKY5<br />
<strong>using</strong> the HS medium was carried out in a static culture<br />
condition and the result is presented in Figure 2. The
Table 3. Similarity analysis of the isolated strain compared with the related taxa.<br />
Wee et al. 16271<br />
Strain Accession number Similarity (%) nt differences /compared<br />
Gluconacetobacter intermedius TF2 T Y14694 99.929 1/1406<br />
Gluconacetobacter oboediens DSM 11826 T AB205221 99.858 2/1406<br />
Gluconacetobacter swingsii DST GL01 T AY180960 99.573 6/1406<br />
Gluconacetobacter europaeus DSM 6160 T Z21936 99.573 6/1406<br />
Gluconacetobacter nataicola LMG 1536 T AB166743 99.573 6/1406<br />
Gluconacetobacter sucrofermentans LMG 18788 T AJ007698 99.502 7/1406<br />
Gluconacetobacter rhaeticus DST GL02 T AY180961 99.468 7/1316<br />
Gluconacetobacter xylinus NCIB 11664 T X75619 99.289 10/1406<br />
Gluconacetobacter saccharivorans LMG 1582 T AB166740 98.908 15/1374<br />
Gluconacetobacter entanii LTH4560 T AJ251110 98.649 19/1406<br />
Gluconacetobacter hansenii NCIMB 8746 T X75620 98.435 22/1406<br />
Gluconacetobacter liquefaciens IFO 12388 T X75617 97.013 42/1406<br />
Gluconacetobacter sacchari SRI 1794 T AF127407 96.864 44/1403<br />
Gluconacetobacter johannae CFN-Cf55 T AF111841 96.797 45/1405<br />
Gluconacetobacter azotocaptans CFN-Ca54 T AF192761 96.728 46/1406<br />
Ameyamaea chiangmaiensis AC04 T AB303366 96.515 49/1406<br />
Asaia spathodeae GB23-2 T AB511277 96.515 49/1406<br />
Asaia bogorensis 71 T AB025928 96.515 49/1406<br />
Tanticharoenia sakaeratensis NBRC 103193 T AB304087 96.444 50/1406<br />
Asaia siamensis S60-1 T AB035416 96.444 50/1406<br />
Asaia krungthepensis AA08 T AB102953 96.370 51/1405<br />
Swaminathania salitolerans PA51 T AF459454 96.296 52/1404<br />
Asaia lannensis BCC 15733 T AB286050 96.230 53/1406<br />
Acetobacter lovaniensis LMG 1617 T AJ419837 96.157 54/1405<br />
Acetobacter fabarum 985 T AM905849 96.157 54/1405<br />
Acetobacter estunensis LMG 1626 T AJ419838 96.085 55/1405<br />
Acetobacter syzygii 9H-2 T AB052712 96.014 56/1405<br />
Acetobacter ghanensis 430A T EF030713 96.014 56/1405<br />
Acidomonas methanolica LMG 1668 T X77468 95.590 62/1406<br />
T Type strain.<br />
stationary phase was observed after 5 days of cultivation<br />
and the dry cell weight reached a maximum value of 4.2<br />
g L -1 . The amount of BC produced increased with the cell<br />
growth, which suggested that the BC produced by<br />
Gluconacetobacter sp. RKY5 is a growth-associated<br />
product. The maximum amount of BC was 5.0 g L -1 after<br />
6 days of cultivation. As shown in Table 4, the amount of<br />
BC produced by Gluconacetobacter sp. RKY5 was<br />
relatively high when compared to that of the relevant<br />
studies (Hungund and Gupta, 2010a, b; Mikkelsen et al.,<br />
2009; Park et al., 2003; Son et al., 2003; Zhou et al.,<br />
2007).<br />
The glucose concentration in the HS medium sharply<br />
decreased for 6 days of cultivation, and then the cell<br />
growth became constant after 5 days of cultivation when<br />
most glucose was consumed. During the BC production,<br />
the pH of the HS medium decreased <strong>from</strong> 6.0 to 4.0, and<br />
then increased to 4.5 after 5 days of cultivation (data not<br />
shown). A similar result was reported in literatures, in<br />
which the decrease in medium pH could be elucidated<br />
based on glucose metabolism where some glucose was<br />
converted into gluconic acid by membrane-bound glucose<br />
dehydrogenase <strong>from</strong> the cells. The resultant<br />
gluconic acid lowers the medium pH (Krystynowicz et al.,<br />
2002; Vandamme et al., 1998). At the end of BC<br />
production, the consumption of gluconic acid by the cells<br />
may increase the medium pH.<br />
The BC film produced by acetic acid bacteria in a static
16272 Afr. J. Biotechnol.<br />
Figure 1. Neighbor-joining phylogenetic tree deduced <strong>from</strong> the 16S rRNA gene sequences representing the position of the<br />
isolated strain and other related taxa. Numbers at nodes are percentage bootstrap values based on 1,000 replications.<br />
GeneBank accession numbers of the sequences are indicated in the parentheses. Bar indicates 5 nt substitution per 1,000 nt.
(g L -1 )<br />
(day)<br />
Wee et al. 16273<br />
Figure 2. Time course of BC production by the isolated Gluconacetobacter sp. RKY5 under a static culture condition<br />
at 30°C in 250 ml Erlenmeyer flask containing 50 ml of HS medium.<br />
Table 4. Comparison of BC production in the literatures cited.<br />
Microorganism Culture type Culture time BC yield (g L -1 ) Reference<br />
Gluconacetobacter sp. RKY5 Static 6 days 5.0 This work<br />
Enterobacter amnigenus GH-1 Static 14 days 4.1 Hungund and Gupta, 2010a<br />
Gluconacetobacter xylinus (NCIM 2526) Static 14 days 3.0 Hungund and Gupta, 2010b<br />
Gluconacetobacter xylinus (ATCC 53524) Static 4 days 3.8 Mikkelsen et al., 2009<br />
Gluconacetobacter hasenii PJK Static 2 days 0.4 Park et al., 2003<br />
Acetobacter sp. V6 Agitated 8 days 3.7 Son et al., 2003<br />
Acetobacter xylinum NUST4.1 Agitated 5 days 3.7 Zhou et al., 2007<br />
culture condition is typically located on the liquid surface,<br />
and its thickness grows with the cultivation time (Borzani<br />
and de Souza, 1995). The BC pellicle produced by<br />
Gluconacetobacter sp. RKY5 was similarly located on the<br />
surface of the culture broth, which became thicker with<br />
the elapsed culture time. A structure of BC can be<br />
represented as an ultrafine net built of entangled<br />
cellulose ribbons (Krystynowicz et al., 2002). Figure 3a<br />
shows the SEM photograph of the BC produced under a<br />
static culture condition. When compared with the<br />
structure of plant-derived cellulose, as shown in Figure<br />
3b, the BC had the network structure of ribbon-shaped<br />
fibrils, which is a critical factor that determines the unique<br />
properties of reticulated BC (Krystynowicz et al., 2002).<br />
The x-ray diffractogram of the BC produced by<br />
Gluconacetobacter sp. RKY5 revealed a typical cellulose<br />
pattern (Figure 4). Also, the X-ray diffractograms of the<br />
BC sample and filter paper demonstrate three characteristic<br />
peaks, and the X-ray diffractogram of the BC<br />
sample was quite similar to that of the filter paper made<br />
of highly-purified cellulose. Thus, the aforementioned<br />
SEM and X-ray diffraction pattern suggested that the BC<br />
produced by Gluconacetobacter sp. RKY5 should be<br />
pure cellulose and free of any other impurities.<br />
Conclusion<br />
A novel BC producer was isolated <strong>from</strong> the persimmon<br />
vinegar, and it was characterized on the basis of the<br />
(g L -1 )
16274 Afr. J. Biotechnol.<br />
Figure 3. Scanning electron micrograph of (a) BC produced by Gluconacetobacter sp. RKY5<br />
and (b) filter paper. The elliptical mass shown in (a) is the cells of Gluconacetobacter sp. RKY5<br />
embedded in the BC.<br />
morphological, biochemical, and genetic identifications.<br />
The isolated strain belonged to Acetobacteracea, and it<br />
was closely related to the genus Gluconacetobacter.<br />
Thus, this isolated strain was named as<br />
Gluconacetobacter sp. RKY5. The BC production by<br />
Gluconacetobacter sp. RKY5 exhibited a growthassociated<br />
pattern. The BC produced also had the<br />
distinguished network structure of ribbon-shaped fibrils<br />
like the structure of the BC produced by other microbial<br />
sources, and it was composed of pure cellulose without
Figure 4. X-Ray diffraction patterns obtained <strong>from</strong> filter paper and BC produced by Gluconacetobacter sp. RKY5.<br />
any other impurities. It is expected that<br />
Gluconacetobacter sp. RKY5 can be used in a variety of<br />
industrial applications related to the BC production.<br />
ACKNOWLEDGEMENT<br />
This research was supported by the Yeungnam University<br />
research grants in 2009.<br />
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production of bacterial cellulose by Acetobacter sp. V6 in synthetic<br />
media under shaking culture conditions. Bioresour. Technol. 86: 215-<br />
219.<br />
Suehiro A, Kanemaru S, Umeda H, Amano Y, Omori K, Ito J (2007).<br />
Bacterial cellulose: a new biomaterial for mucosal regeneration of<br />
trachea. Tissue Eng. 13: 1642.<br />
Svensson A, Nicklasson E, Harrah T, Panilaitis B, Kaplan DL, Brittberg<br />
M, Gatenholm P (2005). Bacterial cellulose as a potential scaffold for<br />
tissue engineering of cartilage. Biomaterials 26: 419-431.<br />
Vandamme EJ, De Baets S, Vanbaelen A, Joris K, De Wulf D (1998).<br />
Improved production of bacterial cellulose and its application<br />
potential. Poly. Degrad. Stab. 59: 93-99.<br />
Watanabe K, Tabuchi M, Morinaga Y, Yoshinaga F (1998). Structural<br />
features and properties of bacterial cellulose produced in agitated<br />
culture. Cellulose 5: 187–200.<br />
Yamada Y, Hoshino K, Ishikawa T (1997). The phylogeny of acetic acid<br />
bacteria based on the partial sequences of 16S ribosomal RNA: the<br />
elevation of the subgenus Gluconacetobacter to the genetic level.<br />
Biosci. Biotechnol. Biochem. 61: 1244-1251.<br />
Yamanaka S, Watanabe K, Kitamura M, Iguchi M, Mitsuhashi S, Nishi Y,<br />
Uryr M (1989). The structure and mechanical properties of sheets<br />
prepared <strong>from</strong> bacterial cellulose. J. Mater. Sci. 24: 3141-3145.<br />
Yeo SH, Lee OS, Lee IS, Kim HS, Yu TS, Jeong YJ (2004).<br />
Gluconacetobacter persimmonis sp. nov., isolated <strong>from</strong> Korean<br />
traditional persimmon vinegar. J. Microbiol. Biotechnol. 14: 276-283.<br />
Yoshinaga F, Tonouchi N, Watanabe K (1997). Research progress in<br />
production of bacterial cellulose by aeration and agitation culture and<br />
its application as a new industrial material. Biosci. Biotechnol.<br />
Biochem. 61: 219-224.<br />
Zhou LL, Sun DP, Hu LY, Li YW, Yang JZ (2007). Effect of addition of<br />
sodium alginate on bacterial cellulose production by Acetobacter<br />
xylinum. J. Ind. Microbiol. Biotechnol. 34: 483-489.
African Journal of Biotechnology Vol. 10(72), pp. 16277-16285, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.155<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Purification and characterization of an endo-1,4-βglucanase<br />
<strong>from</strong> Bacillus cereus<br />
Hong Yan 1 *, Yingjie Dai 2 *, Ying Zhang 2 , Lilong Yan 2 and Dan Liu 3<br />
1 College of Chemical and Environmental Engineering, Harbin University of Science and Technology; Key Laboratory<br />
of Green Chemical Technology of College of Heilongjiang Province, Harbin, 150080, People’s Republic of China.<br />
2 School of Resources Environment, Northeast Agricultural University, Harbin 150030, People’s Republic of China.<br />
3 Department of Life Science and Engineering, Harbin Institute of Technology, Harbin, 150001, People’s Republic of<br />
China.<br />
Accepted 24 June, 2011<br />
A cellulase produced by Bacillus cereus (B. cereus), isolated <strong>from</strong> the local soil, was purified to<br />
homogeneity <strong>from</strong> culture broth. The enzyme had a molecular mass of 51.3 kDa. The optimal cellulase<br />
activity was at pH 8 and at the temperature of 55°C. The enzyme was stable at 50°C in the pH range of 5<br />
to 9. The enzyme was stable up to 55°C above which stability decreased rapidly after incubation for 1 h.<br />
The enzyme showed the highest activity with carboxymethyl cellulose. Slight activity was also observed<br />
towards cellulose in the filter paper and xylan. For carboxymethyl cellulose, the cellulase had a Km of<br />
2.12 mg/ml and Vmax of 5.37 μg/ml·min. The activity of the enzyme was not influenced by Fe 2+ , Zn 2+ , urea,<br />
EDTA, Ca 2+ , Co 2+ , K + and Na + , but it was increased by 13% in the presence of Mn 2+ . Ba 2+ 2- 2+<br />
, C2O4 , Mg and<br />
Cu 2+ caused a loss in the enzyme activity. The FT-IR spectrum of this carboxymethyl cellulase (CMCase)<br />
showed the characteristic cellulase peaks. Infrared spectrum of the amide I and II bands of the CMCase<br />
showed that secondary structure of the CMCase mainly consists of α-helix structures in solid phase.<br />
This enzyme (the cellulase produced by B. cereus) is of high value in the industry applications (such as<br />
laundry) in the future.<br />
Key words: Cellulase, Bacillus cereus, purification, characterization.<br />
INTRODUCTION<br />
Cellulose, an abundant and renewable energy resource,<br />
can be converted into useful products such as soluble<br />
sugars, alcohols and other industrially important chemicals<br />
by enzymatic degradation (Ryu and Mandels, 1980;<br />
Mandels, 1985). Cellulolytic microorganisms are found<br />
among extremely variegated taxonomic groups. Most<br />
belong to eubacteria and fungi, such as aerobic and<br />
anaerobic bacteria (Gilkes et al., 1991), white rot fungi<br />
(Uzcategui et al., 1991), soft rot fungi (Wood et al.,1988)<br />
and anaerobic fungi (Barichievic and Calza, 1990),<br />
however, anaerobic, cellulose-degrading protozoa have<br />
also been identified in the rumen (Coleman, 1978).<br />
*Corresponding author. E-mail: dai5188@hotmail.com.<br />
Tel/Fax: +86 451 5519 1170.<br />
#Both authors contributed equally to the work.<br />
Microorganisms capable of hydrolyzing this biopolymer<br />
secrete cellulase, include three types of enzymes,<br />
namely endo-1,4-β-D-glucanase [(1, 4)-β-D-glucan glucanohydrolase,<br />
EC3.2.1.4], exo-1,4-β-D-glucanase [(1, 4)β-D-glucan<br />
cellobiohydrolase, EC3.2.1.91] and βglucosidase<br />
[β-D-glucoside glucohydrolase, EC3.2.1.21]<br />
(Wood, 1985).<br />
Cellulases have attracted much attention because of<br />
their diverse practical applications and the need to<br />
understand the mechanisms of their hydrolysis of plant<br />
carbohydrate polymers (Bhat and Bhat, 1997). The major<br />
industrial applications of cellulases are in the textile<br />
industry for “bio-polishing” of fabrics and producing<br />
stonewashed look of denims, as well as in household<br />
laundry detergents for improving fabric softness and<br />
brightness (Cavaco-Paulo, 1998). Besides, they are used<br />
in animal feeds for improving the nutritional quality and<br />
digestibility, in the processing of fruit juices and in baking.<br />
De-inking of paper is yet another emerging application
16278 Afr. J. Biotechnol.<br />
(Tolan and Foody, 1999). An area where cellulases would<br />
have a central role is the bioconversion of renewable<br />
cellulosic biomass to commodity chemicals (Gilbert and<br />
Hazlewood, 1993; Lark et al., 1997; Gong et al., 1997;<br />
Gong et al., 1999; Himmel et al., 1999). The cellulases<br />
that are used for these industrial applications are<br />
generally <strong>from</strong> fungal sources (Tolan and Foody, 1999).<br />
Historically, Bacillus species are a rich source of<br />
industrial enzymes (Horikoshi and Alkaliphiles, 1999;<br />
Priest, 1977), but the study of Bacillus cellulase has, until<br />
recently, lagged behind that of fungal enzymes. This is<br />
largely due to the fact that most Bacillus cellulase<br />
hydrolyzes synthetic carboxymethyl cellulose (CMC), but<br />
barely hydrolyzes the crystalline form of cellulose. These<br />
Bacillus cellulases also include the alkaline cellulases,<br />
which has the potential to be used as laundry detergent<br />
additives.<br />
The main purpose of this study was to investigate the<br />
purification procedures and the properties of the cellulase<br />
produced by Bacillus cereus. The biochemical properties<br />
of the purified enzyme and its application in the industry<br />
for the cellulase produced by B. cereus were studied.<br />
MATERIALS AND METHODS<br />
Xylan (<strong>from</strong> beechwood), p-nitrophenyl-β-D-cellobioside (pNPC), pnitrophenyl-β-D-galactopyranoside<br />
(pNPG) and mannosan were<br />
purchased <strong>from</strong> Sigma (St. Louis, MO, USA). Filter paper was <strong>from</strong><br />
Whatman (Kent, UK). Sephadex G-75 and protein MW marker was<br />
purchased <strong>from</strong> Pharmacia (Now Pfizer, NY, USA). D(-)-salicin was<br />
obtained <strong>from</strong> Aldrich (Milwaukee, MI, USA). Other chemicals used<br />
were of the purest grade commercially available.<br />
Microorganisms and culture conditions<br />
B. cereus was isolated <strong>from</strong> the local soil by the laboratory of Green<br />
Chemical Technology of College of Heilongjiang Province. The<br />
minimal medium contained (per liter): Na2HPO4 3.0 g, MgSO4·7H2O<br />
0.5 g, CaCl2 0.5 g, MnSO4·H2O 2.5 mg, ZnSO4 2.0 mg, CoCl2 3.0<br />
mg and FeSO4·7H2O 7.5 mg. Wheat bran (30 g/l) and bean cake<br />
(10 g/l) were add to supplement the minimal medium as the carbon<br />
source and nitrogen source for maximum cellulase production (unpublished<br />
data). The bacterium was grown in a 19 L stirred<br />
bioreactor (working volume was 10 L) at 30°C and pH 5 for 60 h.<br />
Oxygen concentration was kept at a minimum of 50% saturation by<br />
varying the agitation speed.<br />
Enzyme purification<br />
The culture broth (every time 200 ml) was centrifuged in a J2-21M<br />
centrifuge (Beckman, Palo Alto, CA) at 3000 rpm for 15 min at 4°C<br />
for 10 L culture broth. Ammonium sulfate was added to the<br />
supernatant at 90% saturation and the solution was stirred for 30<br />
min in an ice bath. The precipitate formed was collected by<br />
centrifugation (5000 rpm, 15 min) and dissolved in a small amount<br />
of distilled water. The solution was then dialyzed against the<br />
distilled water overnight and applied to a Sephadex G-75 column<br />
(80 × 1.6 cm) that had been pre-equilibrated with 0.02 M sodium<br />
acetate (NaAc) buffer (pH 4.8). The flow rate was 12 ml/h. The<br />
fractions showing CMCase activity were pooled and concentrated<br />
by ultrafiltration through a 10 kDa cut off membrane. This purifica-<br />
Tion procedure yielded one endoglucanase active fraction and its<br />
homogeneity was determined by SDS-PAGE and HPLC.<br />
Enzyme assay<br />
Endo-β-1,4-glucanase activity was assayed by incubating 1 ml of<br />
the isolated enzyme (suitably diluted) with 1 ml of 1% (W/V)<br />
carboxymethyl cellulose in NaAc buffer (0.02 M, pH 4.8) at 50°C for<br />
30 min (Ghose, 1987). The amount of reducing sugar produced was<br />
measured by the 3, 5-dinitrosalicylic (DNS) reagent method (Miller,<br />
1959).<br />
Hydrolytic activities of the enzyme towards salicin, mannan,<br />
xylan, p-nitrophenyl-β-D-cellobioside (pNPC) (Desphander, 1984)<br />
and p-nitrophenyl-β-D-galactopyranoside (pNPG) (Tilbeurog and<br />
Claeysseus, 1985), were determined by replacing carboxymethyl<br />
cellulose with 1% (W/V) of the respective substrate in the same<br />
buffer.<br />
To determine the enzyme activity towards the cellulose in filter<br />
paper (FPA), 50 mg Whatman No. 1 filter paper, 1 ml of 0.02 M<br />
NaAc buffer (pH 4.8) and 1 ml of the enzyme solution (suitably<br />
diluted) were mixed in a tube, which was incubated for 1 h at 50°C<br />
by the method of Eriksson et al. (1990). The reducing sugars<br />
produced during incubation were assayed with the same method as<br />
described.<br />
To determine the enzyme activity towards the cellulose in cotton,<br />
50 mg absorbent cotton, 1 ml of 0.02 M NaAc buffer (pH 4.8) and 1<br />
ml of the enzyme solution (suitably diluted) were mixed in a tube,<br />
which was incubated for 24 h at 50°C according to the method of<br />
Vallander and Eriksson (1985). The reducing sugars produced<br />
during incubation were assayed with the same method as<br />
described.<br />
The cellulase activity towards microcrystalline cellulose was<br />
assayed by incubating 1 ml of 2% (W/V) microcrystalline cellulose<br />
diluted in 0.02 M NaAc buffer at pH 4.8 with 1 ml of enzyme solution<br />
(suitably diluted) at 50°C for 2 h according to the method of<br />
Coudray et al. (1982). The samples were centrifuged at 5000 rpm<br />
for 10 min to remove the insoluble substrates. Reducing sugar in<br />
the supernatant was assayed with the DNS method.<br />
The protein concentration was examined by the Coomassie<br />
bright blue procedure (Bradford, 1976) <strong>using</strong> bovine serum albumin<br />
as the standard. One unit of enzyme activity is defined as the<br />
amounts of enzyme that liberated 1 μg of glucose in 1 min at 50°C,<br />
except for cotton; one unit of enzyme activity is defined as the<br />
amount of enzyme that liberated 1 μg of glucose in 1 h at 50°C. All<br />
the activity measurements were performed three times.<br />
Determination of purity and molecular weight<br />
The purity and molecular weight of the purified endoglucanase were<br />
determined by SDS-PAGE and gel filtration chromatography. Purity<br />
was assessed on an Agilent 1100 HPLC instrument with a multiple<br />
wavelength detector. Specifically, 5 µl was injected onto a ODS<br />
column (4.6 × 100 mm) and acetonitrile and water (70/30; V/V)<br />
were pre-mixed, degassed, filtered and used as the mobile phase<br />
at a flow rate of 1.0 ml/min.<br />
Effect of pH and temperature on the activity and stability of<br />
endoglucanase<br />
The enzyme activity was measured in the pH range of 3 to 12 with<br />
CMC as the substrate. The temperature effect was studied between<br />
35 and 80°C in 0.02 M NaAc buffer, pH 4.8 with CMC as the<br />
substrate. For stability measurements, the enzyme was incubated<br />
at different pH or temperature for a period of time before used in the<br />
activity assay.
Table 1. Summary of the purification steps of endoglucanase <strong>from</strong> B. cereus.<br />
Purification step<br />
Total protein<br />
(mg)<br />
Total activity<br />
(IU/ml)<br />
Specific activity<br />
(IU/mg)<br />
Purification<br />
fold<br />
Culture broth 181.73 6357.00 34.98 1.00 100.00<br />
Precipitation 42.52 3688.68 86.75 2.48 58.03<br />
SephadexG-75 7.93 1005.24 126.83 3.63 15.81<br />
66.2 kDa<br />
45.0 kDa<br />
35.0 kDa<br />
25.0 kDa<br />
Figure 1. SDS-PAGE of purified endoglucanase.<br />
Lane 1 and 2: purified sample.<br />
Effects of metals, surfactants and chelating agents<br />
Metals ions, surfactants and chelating agents (10 mM) were added<br />
to endoglucanase solutions and the remaining activity was<br />
measured in 0.02 M NaAc buffer (pH 4.8) at 50°C for 30 min with<br />
CMC as the substrate.<br />
FTIR spectrum of the endoglucanase<br />
Fourier-transform infrared spectra (FT-IR) were obtained with a<br />
Magna-IR 560 E.S.P spectrometer. The wave number scanning<br />
range was 4000 and 600 cm -1 . After homogenizing, KBr disks<br />
containing the freeze-dried enzyme were made for the IR<br />
measurement.<br />
RESULTS AND DISCUSSION<br />
Purification of endoglucanase<br />
Marker 1 2<br />
After cultivating B. cereus in a medium containing wheat<br />
bran and bean cake as the respective carbon source and<br />
nitrogen source for 60 h, the extracellular cellulase (FPA)<br />
was detected at 16.94 IU/ml in the culture broth. The<br />
typical purification steps of endoglucanase are<br />
Yan et al. 16279<br />
Yield<br />
(%)<br />
summarized in Table 1. The crude extract <strong>from</strong> the culture<br />
medium underwent one-step purification by gel filtration.<br />
The purified endoglucanase proteins showed a single<br />
band on SDS-PAGE and had a molecular mass of 51.3<br />
kDa (Figure 1), which is higher than that of the previously<br />
reported endoglucanases (23 to 43 kDa) produced by<br />
Bacillus sp. (Chan and Au, 1987; Ozaki and Ito, 1991;<br />
Hakamada et al., 2002; Kim and Pack, 1988), but it is<br />
lower than that produced by Bacillus pumilus<br />
(Christakopoulos et al., 1999). The purity of the purified<br />
enzyme was determined to be 92.83% by HPLC (Figure<br />
2). About 15.81% of the enzyme activity, with an overall<br />
purification of 3.63 fold, was recovered (Table 1).<br />
Substrate specificity<br />
The enzyme was active towards the hydrolysis of CMC,<br />
but not active in the hydrolysis of microcrystalline<br />
cellulose, cotton cellulose, mannan, pNPC and pNPG<br />
(Table 2). Using CMC as the substrate at concentrations<br />
of 2 to 10 mg/ml, Km and Vmax of the enzyme were<br />
determined through the Lineweaver-Burk double<br />
reciprocal plot of the initial reaction rates at different<br />
substrate concentrations. The cellulase <strong>from</strong> B. cereus<br />
exhibited a Km of 2.12 mg/ml for CMC at pH 4.8 and<br />
50°C. This value (2.12 mg/ml) is significantly higher than<br />
those reported earlier for other Bacillus endoglucanases<br />
(0.59 to 1.60 mg/ml) (Paul et al., 1999; Kim and Pack,<br />
1988; Sharma et al., 1990). The Vmax of the reaction was<br />
5.37 μg/ml·min.<br />
The purified enzyme exhibited low levels of activity<br />
towards filter paper and xylan, indicating that the enzyme<br />
has weak activity in the hydrolysis of crystalline cellulose<br />
and hemicellulose. The substrate specificities of various<br />
cellulases is important (Crispen et al., 2000), because it<br />
is now generally accepted that the synergism between<br />
different enzymes is required to achieve cellulose<br />
hydrolysis (Wood and Garcia-Campayo, 1990). Enzymes<br />
with overlapping specificities have been reported (Gilbert<br />
and Hazlewood, 1993). The ability to degrade crystalline<br />
cellulose is commonly regarded as the synonymous with<br />
exoglucanases (Beldman et al., 1985). It has been shown<br />
that the endoglucanases <strong>from</strong> Bacillus sp. and fungi<br />
exhibited filter paper hydrolyzing activity in addition to the<br />
CMCase activity, because these endoglucanases also<br />
had exoglucanase activity in the same molecule (Han et<br />
al., 1995; Kim, 1995). Among the endoglucanases <strong>from</strong>
16280 Afr. J. Biotechnol.<br />
Relative activity (%)<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
Figure 2. HPLC chromatogram of the purified endoglucanase.<br />
Table 2. Activity of the cellulase <strong>from</strong> Bacillus cereus towards various<br />
substrates.<br />
Substrate Activity (IU/ml)<br />
Whatman filter paper 0.13<br />
Microcrystalline cellulose 0<br />
Cotton 0<br />
Xylan 0.05<br />
Mannosan 0<br />
Carboxymethyl cellulose 4.38<br />
p-Nitrophenyl- -D-cellobioside (pNPC) 0<br />
p-Nitrophenyl- -D-galactopyranoside (pNPG) 0<br />
Bacilli, such property characteristic has been found in<br />
endoglucanases with sizes varying <strong>from</strong> 35 to 82 kDa<br />
(Beldman et al., 1985; Han et al., 1995). Therefore, it is<br />
likely that the purified endoglucanase <strong>from</strong> B. cereus also<br />
has weak exoglucanase activity.<br />
Effect of pH on the activity and stability of the<br />
endoglucanase<br />
The isolated CMCase exhibited optimal activity in the pH<br />
range of 7 to 9. The highest activity of the CMCase was<br />
observed at pH 8 (Figure 3). The enzyme was stable<br />
2 3 4 5 6 7 8 9 10 11 12<br />
pH<br />
between pH 5 and 9 (Figure 4) and retained 83% activity<br />
at pH 9. The stability over a broad pH range seems to be<br />
one of the characteristics of many Bacillus endoglucanases<br />
(Christakopoulos et al., 1999; Crispen et al.,<br />
2000; Hakamada et al., 2002).<br />
Effect of temperature on the activity and stability of<br />
endoglucanase<br />
The activities of the enzyme were determined at different<br />
temperatures in the range of 35 to 80°C at pH 4.8 by the<br />
method of Miller (1959). The optimal temperature of the
Relactive activity (%)<br />
Figure 3. Effect of pH on the activity of purified CMCase. Enzyme was incubated in 0.02 M<br />
buffer for 30 min at 50°C. The buffers used were citrate (pH 3.0 to 6.0), phosphate (pH 7.0<br />
to 8.0), borax-NaOH (pH 9.0), NaHCO3-NaOH (pH 10.0) and Na2HPO4-NaOH solution (pH<br />
11.0 to 12.0). The highest enzyme activity in various pH buffers was taken as 100%.<br />
Relative activity (%)<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
100<br />
80<br />
60<br />
40<br />
20<br />
Figure 4. Effect of pH on the stability of purified CMCase. The enzyme was incubated in 0.02<br />
M buffer for 1 h at 30°C prior to measuring the residual endoglucanase activity under standard<br />
assay conditions. The buffers used were citrate (pH 3.0 to 6.0), phosphate (pH 7.0 to 8.0),<br />
borax-NaOH (pH 9.0), NaHCO3-NaOH (pH 10.0) and Na2HPO4-NaOH solution (pH 11.0 to<br />
12.0). The original activity without incubation in various pH buffers was taken as 100%.<br />
enzyme was 55°C (Figure 5). The enzyme was stable up<br />
to 55°C. A rapid decrease in stability was observed above<br />
55°C after incubation for 1 h (Figure 6) and the enzyme<br />
was almost completely inactive at 80°C.<br />
0<br />
2 3 4 5 6 7 8 9 10 11 12<br />
pH<br />
30 35 40 45 50 55 60 65 70 75 80 85<br />
Temperature (℃)<br />
Yan et al. 16281<br />
Effect of metal ions and other reagents on the<br />
endoglucanase<br />
The purified enzyme and 10 mM metal ions and other
16282 Afr. J. Biotechnol.<br />
%T<br />
90<br />
80<br />
70<br />
60<br />
50<br />
40<br />
30<br />
20<br />
10<br />
0<br />
4000<br />
Relative activity(%)<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
30 40 50 60 70 80<br />
Temperature(℃)<br />
Figure 5. Effect of temperature on the activity of purified CMCase. Enzyme activity was<br />
determined by incubating the enzyme in NaAc buffer (0.02 M, pH 4.8) containing 1% (W/V)<br />
carboxymethyl cellulose at respective temperature and assaying the reducing sugars<br />
released. The 100% enzyme activity was the maximum enzyme activity in NaAc buffer (0.02<br />
M, pH 4.8) between 35 and 80°C.<br />
3197<br />
3000<br />
Figure 6. Effect of temperature on the stability of purified CMCase. The enzyme was incubated in 0.02 M NaAc buffer (pH 4.8) at<br />
respective temperature for 30 min, prior to measuring the endoglucanase activity under standard assay conditions. The original<br />
activity without incubation in 0.02 M NaAc buffer (pH 4.8) at 50°C was taken as 100%.<br />
2000<br />
Wavenumber s ( cm- 1)<br />
1651<br />
1402<br />
1111<br />
1000<br />
618
Table 3. Effect of metal ions and other reagents on the<br />
activity of purified CMCase.<br />
Additive (10 mM) Residual activity (%)<br />
Original activity 100.00<br />
Fe 2+ 102.01<br />
Zn 2+ 100.67<br />
Urea 97.82<br />
SDS 94.97<br />
EDTA 101.84<br />
Mn 2+ 113.40<br />
Ba 2+ 60.97<br />
C2O4 2 - 62.98<br />
Mg 2+ 81.91<br />
Ca 2+ 97.82<br />
Cu 2+ 70.85<br />
Co 2+ 99.16<br />
K + 98.49<br />
Na + 97.82<br />
reagents were incubated at 50°C for 30 min and the<br />
residual endoglucanase activity was assayed with<br />
carboxymethyl cellulose as the substrate. As shown in<br />
Table 3, incubation with Fe 2+ , Zn 2+ , urea, EDTA, Ca 2+ ,<br />
Co 2+ , K + and Na + did not affect the activity of the<br />
endoglucanase. Mn 2+ ions (113.40%) caused an increase<br />
in the activity, while SDS (94.97%) caused a slight<br />
decrease. However, Ba 2+ (60.94%), C2O4<br />
2- (62.98%),<br />
Mg 2+ (81.91%) and Cu 2+ (70.85%) caused significant<br />
losses in enzyme activity. The response of the activities<br />
of CH43 and HR68 enzyme to metal ions seemed to<br />
follow a pattern resembling other Bacillus endoglucanases,<br />
most metal ions such as K + , Na + , Mg 2+ , Cu 2+ ,<br />
Ca 2+ , Ni 2+ , Zn 2+ and Fe 3+ did not influence the activity<br />
(Chan and Au, 1987). While Hg 2+ and Mn 2+ caused a<br />
decrease in the activity (Aa et al., 1994). The significant<br />
stability of the enzyme in the presence of surfactant<br />
(SDS) and chelating agent (EDTA) argues well for this<br />
endoglucanase to be used as an additive in laundry<br />
detergents.<br />
FT-IR spectrum of the endoglucanase<br />
The characteristic region of FT-IR spectrum, namely the<br />
4000 to 1330 cm -1 region (Figure 7), was analyzed. The<br />
CMCase showed a group of wide absorption peaks in the<br />
Yan et al. 16283<br />
range of 3600 to 3000 cm -1 , which was attributed to both<br />
O-H stretching vibration and N-H asymmetric vibration.<br />
The width of the absorption peak is attributed to hydrogen<br />
bonding. The presence of this broad peak indicates that<br />
the CMCase exists as a complex of individual molecules<br />
associated by hydrogen bonds in the solid phase. The<br />
absorption peak of the CMCase near 1650 cm -1<br />
attributed to the amide band I and amide band II in the<br />
main amide chain, which are mainly caused by both N-H<br />
bending vibration in plane and C=O symmetric stretching<br />
vibration. The absorption peak near 1400 cm -1 is amide<br />
band III, which is attributed to both C-N stretching<br />
vibration and N-H bending vibration in plane. The FT-IR<br />
spectrum of CMCase shows characteristic cellulase<br />
peaks. The FT-IR spectroscopic data of the CMCase also<br />
showed peaks in the fingerprint region 1330 and 400 cm -<br />
1 -1<br />
. The absorption peak near 1100 cm is caused by<br />
skeleton stretching vibration of C-N of the amino acid<br />
residues with aliphatic carbon chains and the absorption<br />
peak near 600 cm -1<br />
is caused by O=C-N bending<br />
vibration in plane. Amide band I displayed the<br />
characteristic α-helix absorption at 1650 to 1660 cm -1 and<br />
characteristic β-sheet absorption at 1630 to 1640 cm -1<br />
have been reported (Li et al., 1998); amide band I<br />
displayed that characteristic α-helix absorption at 1653±4<br />
cm -1 have been reported (Elliot and Amobrose, 1950).<br />
The FT-IR spectrum of the CMCase reveals that the<br />
absorption peak at 1651 cm -1 is the characteristic α-helix<br />
peak, which is caused by both N-H bending vibration in<br />
plane and C=O symmetry stretching vibration. We found<br />
that the characteristic peak of β-sheet was not obvious in<br />
the IR spectrum of the CMCase. Infrared spectrum of the<br />
amide I and II bands of CMCase showed that the<br />
absorption peaks at 1630 to 1640 cm -1 were weak,<br />
indicating the lack of the characteristic β-sheet structure.<br />
Therefore, it is likely that secondary structure of the<br />
CMCase mainly consists of α-helixes in the solid phase<br />
(Figure 8).<br />
Conclusions<br />
The work presented a newly isolated B. cereus. Purification<br />
and characterization of an endo-1,4-β-glucanase<br />
<strong>from</strong> B. cereus were investigated. The optimal cellulase<br />
activity was at pH 8 and 55°C. The enzyme showed the<br />
highest activity with carboxymethyl cellulose. Slight<br />
activity was also observed towards cellulose in the filter<br />
paper and xylan. The applications of this enzyme in the<br />
industry (such as laundry) (the cellulase produced by B.<br />
cereus) are importance in future.<br />
ACKNOWLEDGEMENTS<br />
This study was supported by General Program of<br />
Educational Commission of Heilongjiang Province of<br />
China (11531045).<br />
is
16284 Afr. J. Biotechnol.<br />
Absor bance<br />
16<br />
14<br />
12<br />
10<br />
8<br />
6<br />
4<br />
2<br />
0<br />
-2<br />
-4<br />
-6<br />
-8<br />
- 10<br />
- 12<br />
Figure 7. FT-IR spectrum of purified CMCase.<br />
mAU<br />
200<br />
175<br />
150<br />
125<br />
100<br />
75<br />
50<br />
25<br />
0<br />
Figure 8. Infrared spectrum showing the amide I and II bands of purified CMCase.<br />
3000<br />
0.617<br />
0.772 1.006<br />
2000<br />
Wavenumber s ( cm- 1)<br />
1. 1.<br />
0 0.5 1 1926<br />
1.5 2 2.<br />
8 8<br />
5<br />
1000<br />
mi
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African Journal of Biotechnology Vol. 10(72), pp. 16286-16294, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1605<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Chemical composition of Hirsutella<br />
beakdumountainsis, a potential substitute for<br />
Cordyceps sinensis<br />
Rong Li 1,2 , Yu Zhao 3 and Xiaolu Jiang 2 *<br />
1 Tsingtao Brewery Company Limited, Qingdao 266000, China.<br />
2 College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China.<br />
3 College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266003, China.<br />
Accepted 21 September, 2011<br />
A strain of Hirsutella beakdumountainsis parasitized on Antheraea pernyi pupa was isolated <strong>from</strong> the<br />
fruiting body. The objective of this work was to optimize the artificial cultivation condition for the<br />
fruiting bodies of H. beakdumountainsis and compare the compositions of natural fruiting bodies of<br />
Cordyceps sinensis (NFCS), mycelia <strong>from</strong> shake culture (SCHS) and the fruiting bodies <strong>from</strong> artificial<br />
cultivation (ACHS) of H. beakdumountainsis. The crude protein of NFCS accounted for 22.97%;<br />
obviously lower than those of SCHS (27.99%) and ACHS (31.89%). The contents of total and essential<br />
amino acids were in the following descending order: SCHS>ACHS>NFCS, respectively. The total<br />
content of five nucleosides in SCHS (16.82 mg/g) was significantly higher than those of NFCS (5.08<br />
mg/g) and ACHS (4.45 mg/g). The content of D-mannitol in NFCS, SCHS and ACHS was 8.9, 11.5 and<br />
10.2%, respectively. The above results suggest that H. beakdumountainsis can probably be used as a<br />
substitute for C. sinensis.<br />
Key words: Hirsutella beakdumountainsis, Cordyceps sinensis, protein, amino acid, nucleoside, D-mannitol.<br />
INTRODUCTION<br />
Cordyceps sinensis (Bark) Sacc. Link (Claviceptaceae)<br />
(Ascomycetes), one of the well-known traditional Chinese<br />
medicines, is an insect parasitizing fungus. This fungus<br />
lives primarily on the head of the larva of one particular<br />
species of moth, Hepialus armoricanus, but is also<br />
occasionally found growing on other moth species (Zhu<br />
et al., 1998). It is commonly used in China to replenish<br />
the kidney and soothe the lung for the treatment of<br />
fatigue, night sweating, hyposexualities, hyperglycemia,<br />
hyperlipidemia, asthemia after severe illness, respiratory<br />
disease, renal dysfunction and renal failure, arrhythmias<br />
and other heart disease, and liver disease<br />
(Pharmacopoeia of the People’s Republic of China,2005).<br />
Modern pharmacological studies revealed that it has a<br />
broad medicinal effect, and its function of immunity<br />
regulation plays an important role in antitumor effects and<br />
*Corresponding author. E-mail: rongli1011@gmail.com. Tel:<br />
+86 532 82032290. Fax: +86 532 82032389.<br />
organ transplantation (Ma et al., 2001; Shi, 2005).<br />
Furthermore, modern experimental methods in biochemistry<br />
have proved that C. sinensis consists of active<br />
constituents such as polysaccharides, mannitol,<br />
nucleosides, ergosterol, amino acids and trace elements<br />
(Cai et al., 2003; Kiho et al, 1999; Zhi et al., 1991).<br />
However, its usage has been limited during the past<br />
decades due to the high price and the difficulty of its<br />
supply. Therefore, the isolation of anamorph strain <strong>from</strong><br />
C. sinensis is a trend of many scientists to achieve a<br />
large-scale production of mycelia by fermentation.<br />
Nevertheless, the major problem here is that there are 22<br />
hyphomyces <strong>from</strong> 13 genera that are associated with the<br />
anamorph of C. sinensis. A correct anamorphic isolate of<br />
it is thus of highest priority. On the basis of morphological<br />
and molecular evidence, Hirsutella sinensis (Liu et al.,<br />
2004) is currently considered as the correct anamorph of<br />
C. sinensis (Jiang and Yao, 2002). Unfortunately, fewer<br />
studies have been done on the fermentation by H.<br />
sinensis. In addition, the production of fruiting bodies of<br />
C. sinensis in artificial culture has proved to be extremely
difficult and only feasible at laboratory scale. Successful<br />
cultivation for commercial purpose has not yet been<br />
achieved (Yin and Tang, 1995).<br />
A strain of H. beakdumountainsis parasitized on<br />
Antheraea pernyi pupa was collected in Baekdu<br />
Mountain, China. It was isolated <strong>from</strong> the fruiting body.<br />
The strain was identified by Prof. Jiang X.L. (Ocean<br />
University of China). The optimization fermentation<br />
condition for the mycelia of H. beakdumountainsis has<br />
already been achieved in the previous study (Rong et al.,<br />
2010). After fermentation of the strain for four days, the<br />
mycelia biomass yield reached 10.06 g/L. Hence, the<br />
objective of the present research was to optimize the<br />
artificial cultivation condition for the fruiting bodies and<br />
analyze the chemical compositions of mycelia <strong>from</strong> shake<br />
culture (SCHS) and the fruiting body of artificial<br />
cultivation (ACHS), which were compared with that of the<br />
natural fruiting bodies of C. sinensis (NFCS) in order to<br />
find a new substitute of C. sinensis.<br />
MATERIALS AND METHODS<br />
Strain and samples<br />
The mycelia of H. beakdumountainsis were produced by shake<br />
culture. The fruiting bodies of the strain were produced by artificial<br />
cultivation. Samples before experiments, except by specific<br />
indication, were subjected to a dry oven at 60°C for 24 h. The<br />
natural fruiting bodies of C. sinensis (NFCS) were purchased in<br />
Tibet and identified. The materials were milled in a mortar and dried<br />
prior to analysis.<br />
Shake culture method<br />
The stock culture was maintained on potato dextrose agar (PDA)<br />
slants, which were incubated at 24°C for 15 day and then stored at<br />
4°C. Each 250 ml flask with 100 ml of liquid special media was<br />
inoculated with mycelia mat (ca. 10 cm 2 ) <strong>from</strong> a plate culture and<br />
incubated on a shaker at 180 rpm for seven days at 2°C. About 10<br />
ml of the seeding culture was transferred to a 500 ml flask with 200<br />
ml incubated on a shaker at 180 rpm for four days at 24°C. The<br />
culture medium contained sucrose (2.5%), yeast extract (0.5%),<br />
K2HPO4 (0.2%), and MgSO4 (0.05%). The initial pH was adjusted to<br />
5.5 before sterilization. The mycelia were collected by filtering<br />
mycelia through filter paper (Whatman No.1) and drying to a<br />
constant weight at 70°C overnight. All samples were stored at 4°C.<br />
Artificial cultivation method<br />
The process of producing H. beakdumountainsis fruiting bodies was<br />
the same as for other cultivated edible mushrooms. The method<br />
used was the cooked rice in bottle procedure, which was most<br />
widely adopted for commercial production (Zhang, 2005). The<br />
process can be divided into two major stages. The first step was<br />
preparing the seeding culture. The inoculation seeds were<br />
supported by the process of shake culture. Then, we prepared the<br />
rice medium as the second step. The rice medium included 30 g<br />
rice, the powder of A. pernyi pupa and 50 ml nutrient solution, which<br />
was composed of peptone (0.5%), sucrose (2%), K2HPO4 (0.15%),<br />
MgSO4 (0.05%) and vitamin B1 (0.001%). The entire medium was<br />
added to the bottles, sterilized at 120°C for 2 h, and cooled to room<br />
Li et al. 16287<br />
temperature. After inoculation of 10 ml of the seeding culture, the<br />
rice was incubated at 25°C for approximately one week until<br />
mycelia appeared at the surface of the rice. Then the bottles were<br />
arranged under light (500xl) and the fruiting bodies maturated for<br />
about 45 days.<br />
Analytical methods<br />
Protein analysis<br />
Protein was analyzed according to the Micro-Kjeldahl method<br />
(Micro-Kjeldahl apparatus 1030, Tecator Company, Sweden).<br />
Protein content was calculated <strong>using</strong> nitrogen factor (6.25).<br />
Amino acid analysis<br />
Amino acids were determined <strong>using</strong> an automatic amino acid<br />
analyzer (Beckman 6300, Beckman Instrument, Fullerton, CA)<br />
according to the method described by Moore and Stein (1963) and<br />
Danell and Eaker (1992). Hydrolysis of the samples was performed<br />
in the presence of 5.5 mol/L HCl at 120°C for 24 h under a nitrogen<br />
atmosphere. The hydrolysate was evaporated and the residue was<br />
redissolved in 1 ml 0.02 mol/L HCl. The sample was filtered through<br />
a 0.45 μm filter membrane prior to analysis.<br />
Nucleoside analysis<br />
Adenosine, guanosine, uridnine, cytidine and inosine used as<br />
reference substances, were purchased <strong>from</strong> Sigma. Accurate<br />
amounts of nucleosides were dissolved in mobile phase to give<br />
various concentrations for calibration. Samples were extracted by<br />
ultra-sonication with 70% aqueous EtOH for 30 min and filtered<br />
through a 0.45 μm filter membrane prior to analysis. Analysis was<br />
performed <strong>using</strong> high performance liquid chromatography (HPLC)<br />
Agilent 1100 with diode-array detection. A pre-packed RP column<br />
Waters Spherisorb ODS (4.6 × 250mm i.d., 5 μm) was used.<br />
Solvents that constituted the mobile phase were Water (A) and<br />
methanol (B). The elution conditions applied were: 0 to 15 min,<br />
linear gradient 5 to 20% B; 15 to 25 min, linear gradient 20 to 80%<br />
B; 25 to 30 min, linear gradient 80 to 5% B. The flow rate was 1<br />
ml/min, and the injection volume was 10 μl. The analytes were<br />
monitored at 254 nm.<br />
D-Mannitol analysis<br />
The content of mannitol in each sample was determined <strong>using</strong><br />
colorimetric method (Li et al., 1999). In brief, for the contents of<br />
mannitol, 1 ml of the solution containing 0.4 mg of extract and 1 ml<br />
of 0.015 mol/L periodate potassium were mixed. After 10 min, 2 ml<br />
of 5.5 mmol/L rhamnose and 4 ml of fresh Nash reagent (1000 ml of<br />
2 mol/l ammonium acetate mixed with 2ml of acetic acid and 2 ml of<br />
acetyl acetone) were added to the mixture which was placed in a<br />
water bath at 53°C for 15 min. The absorbance was measured at a<br />
wavelength of 413 nm on a APL-752 spectrophotometer (Shanghai,<br />
China). A blank test was prepared by substituting distilled water for<br />
the extract solution. A standard curve was prepared <strong>using</strong> a<br />
mannitol standard. 1 ml of solution containing up to 50 mg/ml of<br />
mannitol was determined by the above method and the mannitol<br />
content of samples was calculated by the linear regression equation<br />
<strong>from</strong> the standard curve.<br />
Statistical analysis<br />
The data was statistically analyzed according to Minitab 15.0 for
16288 Afr. J. Biotechnol.<br />
Fruiting bodies dry<br />
weight (g/bottle)<br />
3.5<br />
3<br />
2.5<br />
2<br />
1.5<br />
1<br />
0.5<br />
dry<br />
(g/bottle)<br />
0<br />
0 5 10 15 20 25 30<br />
Antheraea pernyi pupa powder(g/bottle)<br />
Figure 1. Effect of A pernyi pupa powder on the fruiting bodies growth. All points represent the mean<br />
± SD of triplicates.<br />
windows (Minitab Inc., USA). Significant differences between any<br />
two means were determined at the 0.05 level.<br />
RESULTS AND DISCUSSION<br />
Optimization of artificial cultivation condition<br />
It was reported that the content of A. pernyi pupa powder<br />
was the important factor for fruiting bodies production in<br />
C. militaris (Wang and Yang, 2006). As illustrated in<br />
Figure 1, the maximum yield of fruiting bodies was 2.78<br />
g/bottle, when we added 20 g A. pernyi pupa powder in<br />
the medium. Nevertheless, the yield of fruiting bodies<br />
decreased to 1.96 g/bottle, when the medium included 30<br />
g A. pernyi pupa powder. After 45 days cultured on the<br />
optimized condition, the fruiting bodies were matured,<br />
which were the same as the natural ones <strong>from</strong> the<br />
original sample in the morphology (Figures 2 and 3).<br />
The composition analysis<br />
Crude protein<br />
Crude protein contents in NFCS were significantly<br />
different <strong>from</strong> those of SCHS and ACHS. They were in<br />
the following descending order: ACHS> SCHS>NFCS.<br />
Crude protein contents of ACHS and SCHS were 31.89<br />
and 27.99%, respectively, higher than those of NFCS<br />
(22.97%). Previous papers reported that the content of<br />
crude protein in C. sinensis was in the range of 20.06 to<br />
33.00% (Hsu et al., 2002; Ji et al., 1999). The protein<br />
content is mainly due to different geographical origins.<br />
Amino acids<br />
Over 20% of amino acids can be found in Cordyceps,<br />
which should be responsible for the tonic and immunopotentiating<br />
activity of Cordyceps (Li et al., 2006). Amino<br />
acid content and composition in NFCS, ACHS and SCHS<br />
are presented in Table 1. There are statistically significant<br />
differences in the contents of total amino acids between<br />
NFCS and SCHS. The contents of the total and essential<br />
amino acids in SCHS were 28.18 g/100 g and 7.50 g/100<br />
g, respectively; highest among the three samples. As<br />
illustrated in the Figure 4, the compounds percentage of<br />
the total amino acids was similar in NFCS, SCHS and<br />
ACHS. The four principal amino acids were glutamic acid,<br />
arginine, aspartic acid and valine. However, their levels<br />
were different in NFCS, SCHS and ACHS as showed in<br />
Table 1; glutamic acid: 1.39, 5.85, 5.23(g/100 g); arginine:<br />
1.35, 4.35, 2.00(g/100 g), aspartic acid: 1.43, 2.40,<br />
2.13(g/100 g); valine: 1.05, 2.19, 1.66(g/100 g),<br />
respectively. Glutamine acid is the most abundant<br />
compound in ACHS and SCHS, representing 24 and 21%<br />
of total compounds (Figure 4). In addition, the level of<br />
total amino acids in the NFCS was about 12.99(g/100 g)<br />
in the study; lower than 16.4 to 18.1(g/100 g) as reported<br />
(Hsu et al., 2002). It is found that the content of amino<br />
acids in C. sinensis after hydrolysis is mostly 20 to 25%;<br />
the lowest being 5.53%, and the highest being 39.22% (Ji<br />
et al., 1999).<br />
Nucleosides<br />
Nucleosides are one of the major components in<br />
Cordyceps. Adenosine, inosine or cordycepin are used as
Figure 2. The matured fruiting bodies after artificial cultivation for 45<br />
days.<br />
Figure 3. The original sample collected in Baekdu Mountain, China.<br />
Li et al. 16289
16290 Afr. J. Biotechnol.<br />
%<br />
30<br />
25<br />
20<br />
15<br />
10<br />
5<br />
0<br />
Table 1. Amino acid composition of NFCS, SCHS and ACHS (g/100 g).<br />
Amino acid NFCS SCHS ACHS<br />
Aspartic acid 1.43 b 2.40 a 2.13 a<br />
Threonine 0.75 b 1.42 a 1.16 a<br />
Serine 0.75 b 1.48 a 1.43 a<br />
Glutamic acid 1.39 b 5.85 a 5.23 a<br />
Glycine 0.65 b 1.50 a 1.20 a<br />
Proline 0.45 b 0.86 a 0.70 a<br />
Alanine 0.81 b 1.39 a 1.43 a<br />
Valine 1.05 c 2.19 a 1.66 b<br />
Methionine 0.41 a 0.26 b 0.21 b<br />
Isoleucine 0.46 c 0.81 a 0.62 b<br />
Leucine 0.83 c 1.28 a 1.00 b<br />
Tyrosine 0.36 b 0.59 a 0.73 a<br />
Phenylalanine 0.58 a 0.61 a 0.54 b<br />
Lysine 0.94 a 0.93 a 0.97 a<br />
Histidine 0.78 b 2.26 a 0.80 b<br />
Argnine 1.35 c 4.35 a 2.00 b<br />
Total amino acid 12.99 b 28.18 a 21.81 a<br />
Total essential amino acid 5.20 c 7.50 a 6.16 b<br />
ACHS SCHS NFCS<br />
Asp Thr Ser Glu Gly Pro Ala Val Met Ile Leu Tyr Phe Lys His Arg<br />
Compound<br />
Compound<br />
Figure 4. Amino acid profiles of NFCS, SCHS and ACHS. Asp, aspartic acid; Thr, Threonine; Ser, Serine; Glu, Glutamic<br />
acid; Gly, Glycine; Pro, Proline; Ala, Alanine; Val, Valine; Met, Methionine; Ile, Isoleucine; Leu, Leucine; Tyr, Tyrosine;<br />
Phe, Phenylalanine; Lys, Lysine; His, Histidine; Arg, Argnine.<br />
indexing ingredients for quality control, which differentiate<br />
Cordyceps <strong>from</strong> different species and the counterfeit<br />
(Gong et al., 2004; Huang et al., 2003; Li et al., 2004).<br />
Indeed, nucleosides are involved in the regulation and<br />
modulation of various physiological processes in the<br />
central nervous system (CNS). Adenosine is known to
Table 2. Composition of the five nucleosides in NFCS, SCHS and ACHS (mg/g).<br />
Nucleoside NFCS SCHS ACHS<br />
Adenosine 0.98 c 5.78 a 1.68 b<br />
Guanosine 1.63 b 5.30 a 0.48 c<br />
Uridnine 1.85 b 4.95 a 2.30 b<br />
Inosine 0.63 a 0.45 a ND<br />
Thymine ND 0.34 ND<br />
Total 5.08 b 16.82 a 4.45 b<br />
ND= non-detectable. Means (n=3) with different letters in the same row are significantly<br />
different (PACHS>NFCS. Each<br />
of the five nucleosides contents in SCHS was significantly<br />
higher than those of NFCS and ACHS. ACHS contains<br />
less nucleoside than NFCS, especially inosine, which<br />
cannot be detected in ACHS. The content of mannitol in<br />
NFCS, SCHS and ACHS was 8.9, 11.5 and 10.2%,<br />
respectively but there were no statistical differences. Our<br />
findings suggest that H. beakdumountainsis can be<br />
regarded as a potential substitute of C. sinensis.<br />
Moreover, the method of shake culture of the strain<br />
seemed better than that of artificial culture based on the<br />
content of the active compounds. In addition, more<br />
attention will be placed on other active constituents such<br />
as polysaccharides in further research, and the<br />
identification of the strain is still in process.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16293-16299, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1929<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Phenolic composition and antioxidant capacity of<br />
Cherry laurel (Laurocerasus officinalis Roem.) sampled<br />
<strong>from</strong> Trabzon region, Turkey<br />
Fatma Yaylaci Karahalil 1 * and Hüseyin Şahin 2<br />
Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey.<br />
Accepted 30 September, 2011<br />
In this study, we investigated 17 different phenolic constituents and total antioxidant properties of<br />
cherry laurel, Laurocerasus officinalis Roem (family Rosaceae), locally named karayemis or taflan, a<br />
summer fruit highly characteristic of the Black Sea region. Phenolic constituents were measured by<br />
reverse phase-high performance liquid chromatography (RP-HPLC). Total phenolic compounds, total<br />
flavonoids, ferric reducing /antioxidant power (FRAP), cupric ion reducing capacity (CUPRAC) and 2,2diphenly-1-picrylhydrazyl<br />
(DPPH) radical methods were used to evaluate the antioxidant capacity. The<br />
total phenolics and total flavonoids were found to be 1.094 g GAE/100 g DW and 0.080 g QUE/100 g DW,<br />
respectively. Chlorogenic acid was found, that is, the main phenolic component of the methanolic<br />
extract of the fruit. Gallic, protocatechuic acid, p-OH benzoic acid, chlorogenic acid, vanillic acid, pcoumaric<br />
acid, ferulic, syringic, cathechin and rutin were detected in the samples, while caffeic acid,<br />
benzoic acid, o-coumaric acid, abscisic acid, trans-cinnamic acid, epicathecin and quercetin were not<br />
detected. The results indicate that cherry laurel fruits proved to be a good source of antioxidant that<br />
might serve to protect humans <strong>from</strong> several diseases.<br />
Key words: Cherry laurel, phenolics, flavonoids, antioxidant.<br />
INTRODUCTION<br />
Laurocerasus officinalis Roem (family Rosaceae) berries<br />
named as cherry laurel is used for cough reducing,<br />
antispasmodic and in the making of tincture of iodine in<br />
the medical field (Anşin and Özkan, 1993). Cherry laurel<br />
is a summer fruit and is grown in the Black Sea region<br />
(Ayaz et al., 1995). L. officinalis is a wild fruits of the<br />
officinalis species in the Rosaceae family and Prunoideae<br />
subfamily. It is located in the eastern Black Sea region of<br />
Turkey, some of the Balkans, Northern Ireland, Western<br />
Europe, southern and western Caucasia, Iran, eastern<br />
*Correspondence author. E-mail: fkarahalil@hotmail.com or<br />
fyaylaci@ktu.edu.tr. Tel: +904623772487. Fax:<br />
+904623253196.<br />
Abbreviations: ROS, Reactive oxygen species; PPP, pentose<br />
phosphate; RP-HPLC, reverse phase-high performance liquid<br />
chromatography; FRAP, ferric reducing/antioxidant power;<br />
CUPRAC, cupric ion reducing capacity; DPPH, 2,2-diphenly-1picrylhydrazyl;<br />
TPC, total phenolic content.<br />
Marmara, and some Mediterranean countries and is<br />
widely consumed in the eastern Black Sea region. It is<br />
known for its unique taste and ethno-pharmacological<br />
uses including its diuretic and anti-diabetic properties and<br />
for the treatment of stomach ulcers, digestive system<br />
problems, bronchitis, eczemas, and hemorrhoids<br />
(Baytop, 2001). The fruit is mostly consumed as freshly<br />
or dried as well as in the form of jam, pulp, marmalade<br />
and drinks (Kolaylı et al., 2003). The fruits are believed to<br />
be a good ethno-remedy for strengthening the defense<br />
system in human metabolism. In fact, the edible parts of<br />
the fruits have studied in recently years.<br />
Phenolics are the largest class of plant secondary<br />
metabolites, which, in many cases, serve in plant defense<br />
mechanisms to counteract reactive oxygen species<br />
(ROS) in order to survive and prevent molecular damage<br />
and damage by microorganisms, insects, and herbivores<br />
(Kolaylı et al., 2003). They are natural antioxidant either<br />
possible beneficial effects on human health and primarily<br />
synthesized by pentose phosphate (PPP), shikimate and<br />
phenylpropanoid pathways (Randhir et al., 2004; Stratil
16294 Afr. J. Biotechnol.<br />
et al., 2007).<br />
Fruits contain various bioactive compounds with antioxidant<br />
activities, such as vitamins (A, C, and E), and<br />
phenolic compounds (phenolic acids, flavonoids,<br />
flavonols, anthocyanins, tannins and lignins) that possess<br />
antioxidant activities (Liyana-Pathirana et al., 2006).<br />
Antioxidants can inhibit or delay the oxidation of an<br />
oxidize substrate and retard the progress of many<br />
diseases as well as lipid oxidative rancid in foods (Gülçin<br />
et al., 2005). The number of antioxidant compounds<br />
synthesized by plants as secondary products, mainly<br />
phenolic agents, serving in plant defense mechanisms to<br />
counteract ROS, in order to survive (Kolaylı et al., 2003).<br />
The antioxidant activity of phenolics is related to a<br />
number of different mechanisms such as free radical<br />
scavenging, hydrogen donation, single electron transfer,<br />
single oxygen quenching, and metal ion chelating, and<br />
acting as a substrate for radicals such as hydroxyl,<br />
superoxide, and nitric oxide. To summarize antioxidant<br />
agents acts as reducing agents or H- atom donor (Al-<br />
Mamary et al., 2002; Liyana-Pathirana et al., 2006;<br />
Kolaylı et al., 2008).<br />
There are number of clinical and epidemiological<br />
studies suggesting that the antioxidant in plants are main<br />
factors for the observed efficacy of these foods in<br />
reducing the incidence of chronic diseases including<br />
cancer and heart disease. The antioxidant effects and<br />
free radical scavenging activity of phenolic has been<br />
substantially investigated and reported in the literature by<br />
several researches (Peterson and Dwyer, 1998; Gülçin,<br />
2010). In another preliminary study, Kolaylı et al. (2003)<br />
studied some physical, chemical properties and mineral<br />
composition, and radicals scavenging activities (DPPH,<br />
superoxide and hydroxyl) of the fruit that collected <strong>from</strong><br />
Akçaabat, Trabzon.<br />
Although, there are a few studies evaluating antioxidant<br />
and compositional characteristics of cherry laurel varieties,<br />
the endemic fruits was not completely characterized<br />
(Alasalvar et al., 2005; Kolaylı et al., 2003). Therefore,<br />
the current study was designed to assess the phenolic<br />
composition including phenolic acids and flavonoids and<br />
in vitro biological activities, in terms of antioxidant<br />
capacity.<br />
MATERIALS AND METHODS<br />
The phenolic standards (purity> 99.0%) gallic acid, protocathechuic<br />
acid, p-hydroxybenzoic acid, vanillic acid, caffeic acid, chlorogenic<br />
acid, syringic acid, epicatechin, p-coumaric acid, ferulic acid,<br />
benzoic acid, o-coumaric acid, trans-cinnamic acid, abscisic acid,<br />
catechin, rutin, quercetin, propylparaben as <strong>internal</strong> standard (IS)<br />
and neocuproine (2,9-dimethly-1,10- phenanthroline) were obtained<br />
<strong>from</strong> Sigma-Aldrich (St. Louis, MO, USA) and Merck (Darmstadt,<br />
Germany), methanol, acetic acid, and acetonitrile <strong>from</strong> Merck<br />
(Darmstadt, Germany), Trolox (6- hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic<br />
acid), TPTZ (2, 4, 6-tripyridyl-s -triazine) and<br />
Folin-Ciocalteu’s phenol reagent <strong>from</strong> Fluka Chemie GmbH<br />
(Switzerland), polytetrafluoroethylene membranes (porosity 0.2 μm)<br />
for the filtration of the extracts were obtained <strong>from</strong> Sartorius<br />
(Goettingen, Germany).<br />
HPLC (Shimadzu LC-UV) analysis of phenolic compounds was<br />
performed on a reverse phase Zorbax Eclipse XDB-C18 column<br />
(4.6 x 150 mm, 5 µm), <strong>using</strong> a gradient program with two solvents<br />
system (A: 0.5% acetic acid in acetonitrile: water (1:1); B: 2% acetic<br />
acid in water) at a constant solvent flow rate of 1.2 mL/min. Injection<br />
volume was 20 µL. The signals were detected at 280 and 315 nm<br />
by UV-VIS detection.<br />
An ATI-Unicam UV-2 UV-Vis spectrophotometer (Cambridge,<br />
U.K.) was used in all absorbance measurements. All solutions were<br />
prepared with deionized water purified in an Elgacan C104 (Elga,<br />
England) filtration system.<br />
Samples<br />
Ripe fruits of cherry laurel (L. officinalis) were collected <strong>from</strong> Yomra,<br />
Trabzon, Turkey, after full ripening in August 2009 (Figure 1). They<br />
were kept in cool bags for transport to the biochemistry laboratory<br />
and the fruits were washed with distilled water and fruit seeds were<br />
removed then dried at 40°C for 5 days and stored at room bags at<br />
+4°C until tested.<br />
Extraction<br />
For antioxidant tests and HPLC assay, 20 g powdered of the fruit<br />
was homogenized <strong>using</strong> a blender and mixed with 150 mL of<br />
methanol on a magnetic stirrer for 3 h. The supernatant was<br />
removed by filtering through Whatman No.1 filter paper followed by<br />
centrifugation at 10 000 g for 10 min at 4°C. Then, the filtrate was<br />
concentrated in a rotary evaporator under reduced pressure at<br />
40°C and the residue was divided into two parts. One of the parts<br />
was used antioxidant tests and the other was prepared to HPLC<br />
analyses of phenolic compounds. For HPLC analyses, the residue<br />
was dissolved in distilled water and extracted 3 times with 20 mL of<br />
a mixture of cold ethyl acetate and diethyl ether 1:1 (V/V), by<br />
manually shaking. The organic phases were combined and solvents<br />
were removed with rotary evaporator. The final residue was<br />
redissolved in methanol and 100 µL samples taken <strong>from</strong> stock<br />
solution and final volume were completed to 1 mL for necessary<br />
dilution.<br />
Determination of individual phenolic compounds by high<br />
performance liquid chromatography (HPLC)<br />
HPLC (Shimadzu LC-UV) analysis of 17 phenolic compounds was<br />
performed on a reverse phase Zorbax Eclipse XDB-C18 column<br />
(4.6 x 150 mm, 5 µm), <strong>using</strong> a gradient program with two solvents<br />
system (A: 0.5% acetic acid in acetonitrile: water (1:1); B: 2% acetic<br />
acid in water) at a constant solvent flow rate of 1.2 mL/min. Injection<br />
volume was 20 µL. The signals were detected at 280 and 315 nm<br />
by UV-VIS detection.<br />
Determination of total phenolic compounds<br />
Total phenolic contents were determined by the Folin-Ciocalteau<br />
procedure (Slinkard and Singleton, 1977) <strong>using</strong> gallic acid as<br />
standard. Briefly, 0.1 mL of various concentrations of gallic acid and<br />
methanolic samples (1 mg/mL) were diluted with 5.0 mL distilled<br />
water. 0.5 mL of 0.2 N Folin-Ciocalteu reagents was added, and the<br />
contents were vortexed. After 3 min incubation, 1.5 mL of Na2CO3<br />
(2%) solution was added, and, after vortexing, the mixture was<br />
incubated for 2 h at 20°C with intermittent shaking. The absorbance<br />
was measured at 760 nm at the end of the incubation period. The<br />
concentration of total phenolic compounds was calculated as mg of
Figure 1. Location of collected cherry laurel berries.<br />
Karahalil and Şahin 16295<br />
Figure 2. HPLC profiles of methanolic phenolic compounds detected at 280 nm and propyl paraben was used an <strong>internal</strong> Standard. Zorbax<br />
Eclipse XDB-C18 column (4.6 x 150 mm, 5 µm), gradient eluent acetic acid/acetonitrile/water/, flow rate 1.2 mL/min. Peak identification: (1)<br />
gallic acid, (2) proto-catechuic acid, (3) p-OH benzoic acid, (4) catechin, (5) chlorogenic acid, (6) vanillic acid, (7) caffeic acid, (8) syringic<br />
acid, (9) epicatechin, (10) p-coumaric acid, (11) ferulic acid, (12) benzoic acid, (13) rutin, (14) o-coumaric acid, (15) cis, trans- abscisic acid,<br />
(16) trans-cinnamic acid, (17) quercetin, and (18) propyl paraben.
16296 Afr. J. Biotechnol.<br />
Table 1. HPLC analyses of phenolic<br />
constituents of the methanolic laurel cherry<br />
extracts <strong>from</strong> Black sea region of Turkey<br />
(mg/100 g dried mass).<br />
Phenolics Mass<br />
(mg/100g)<br />
Phenolic acids<br />
Gallic acid 0.02 0.01<br />
Protocatechuic acid 3.72 0.50<br />
p-Hydoxybenzoic<br />
acid<br />
8.34 0.42<br />
Chlorogenic acid 33.00 1.23<br />
Vanillic acid 7.69 0.45<br />
Syringic acid 1.30 0.15<br />
p-coumaric acid 2.55 0.60<br />
Ferulic acid 0.58 0.01<br />
Caffeic acid nd<br />
Benzoic acid nd<br />
o-coumaric acid nd<br />
Abscisic acid nd<br />
trans-cinnamic acid nd<br />
Flavonoids<br />
Catechin 3.40 0.12<br />
Rutin 0.10 0.02<br />
Quercetin nd<br />
Epicatechin nd<br />
nd: Not detected.<br />
gallic acid equivalents per g of 100 g of fresh weight (FW) samples,<br />
by <strong>using</strong> a standard graph.<br />
The total flavonoid contents of the methanolic sample were<br />
determined by the aluminum complexation method (Marcucci et al.,<br />
1998). 0.5 mL samples solution mixed with 0.1 mL of 10 aluminum<br />
nitrate (Al(NO3)3 ,
HO<br />
OH<br />
Figure 3. Chlorogenic acid.<br />
O<br />
O<br />
C<br />
H 3<br />
OH<br />
OH<br />
OH<br />
Karahalil and Şahin 16297<br />
Figure 4. A high-performance liquid chromatogram of methanolic laurel cherry extracts (UV-VIS detection at 280 nm and 315 nm).<br />
(1) gallic acid, (2) proto-catechuic acid, (3) p-OH benzoic acid, (4) catechin, (5) chlorogenic acid, (6) vanillic acid, (7) syringic acid,<br />
(8) p-coumaric acid, (9) rutin, (10) ferulic acid, (11) proply paraben.
16298 Afr. J. Biotechnol.<br />
Table 2. Antioxidant activities and total phenolic contents of the methanolic laurel cherry.<br />
Parameter<br />
Sample of<br />
Laurel cherry<br />
Total phenolic<br />
content<br />
(mgGAE/100 g DW)<br />
laurel (Ayaz et al., 1997).<br />
Total phenolic compounds (TPC)<br />
Total flavonoids<br />
content (mg<br />
QEs/100g DW)<br />
Ferric reducing/antioxidant<br />
capacity (FRAP) mM Fe(II) /100<br />
g DW<br />
Cupric reducing/antioxidant<br />
capacity (CUPRAC) mM Trolox<br />
/100 g DW<br />
1.094 0.06 0.080 0.002 28.55 2.31 24.5 3.46<br />
Total phenolic content (TPC) was determined in<br />
comparison with standard gallic acid and TPC of<br />
methanolic samples were found to be 1.094 0.06 mg<br />
GA/100 g dry weights (DW) of methanolic laurel cherry<br />
extract by <strong>using</strong> Folin-Ciocalteu method (Table 2). TPC of<br />
the fruits was found to be 10.4 mg/100 g water-soluble<br />
exracts (Kolaylı et al., 2003) and 454 mg/ 100 g fresh<br />
weight in methanolic extracts (Alasalvar et al., 2005).<br />
When compared, the previous studies about cherry laurel<br />
phenolic contents, methanolic extracts of the fruits was<br />
showed higher TPC. Plants and fruits phenolic are the<br />
largest class of plant secondary metabolites. They<br />
counteract reactive oxygen species in order to survive<br />
and prevent molecular damage by several harmful<br />
microorganisms, insects and herbivores (Kolaylı et al.,<br />
2010).<br />
Total amount of flavonoid was determined in<br />
comparison with quercetin and the result expressed in<br />
terms of mg QEs/100g DW. Total flavonoid content of the<br />
methanolic laurel cherry extracts was found to be 0.080<br />
±0.002 mg Qes/100 g DW. The measured total flavonoid<br />
content constitutes 7.3 % of total phenolic contents.<br />
Shortly, the laurel cherry fruits content several phenolic<br />
substances such as phenolic acids, anthocyanidins and<br />
only 7.3% of the fractions are flavonoids. However, we<br />
measured four individual flavonoids such as catechin,<br />
rutin, quercetin and epicatechin, and catechin was the<br />
highest. Flavonoids are mostly present as glycosides in<br />
plants and during intestinal absorption; these glycosides<br />
are mostly hydrolyzed to their agylcones (Murota and<br />
Terao, 2003).<br />
Total antioxidant capacity<br />
FRAP and CUPRAC test were used for the measurement<br />
of total antioxidant capacity of the methanolic extracts of<br />
the samples. Both methods are based on electron<br />
transfer and are considered to be a good indicator for<br />
total antioxidant power because total reducing power is<br />
the some of the reducing powers of individual compounds<br />
presented in a sample (Tezcan et al., 2011). A total<br />
antioxidant activity of the sample is given in Table 2. The<br />
cherry laurel samples examined in this study<br />
demonstrated familiar reducing capacity compared to<br />
further work (Liyana-Pathirana et al., 2006). Similar to<br />
FRAP test, CUPRAC test confirmed total antioxidant<br />
capacity of the sample and obtained values of CUPRAC<br />
result was close to each other.<br />
In conclusion, we reported that more individual phenolic<br />
compounds have been studied, comprising 13 phenolic<br />
acids and 4 flavonoids than previous studies of L.<br />
officinalis. Apart <strong>from</strong> previous studies, we found some<br />
phenolic compounds such as ferulic acid, gallic acid and<br />
rutin in a small quantity. In addition, the methanolic<br />
extracts of the samples have antioxidant activity and<br />
therefore, cherry laurel fruit provide a valuable source of<br />
nutritional supplements and required further investigation<br />
with regard to its individual anthocyanin components.<br />
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Alasalvar C, Al-Farsi M, Shahidi F (2005). Compositional characteristics<br />
and antioxidant components of cherry laurel varieties and pekmez. J.<br />
Food Sci. 70(1): 47-52.<br />
Al-Mamary M, Al-Meeri A, Al-Habori M (2002). Antioxidant activities and<br />
total phenolics of different types of honey, Nutr. Res. 22: 1041-1047.<br />
Anşin R, Özkan ZC (1993). Seedy plants (spermatopyta) woody taxon,<br />
Karadeniz Technical University Forestry Faculty, Issue No: 19,<br />
Trabzon. (in Turkish).<br />
Apak R, Güçlü K, Özyürek M, Karademir SE (2004). Novel total<br />
antioxidant capacity index for dietary polyphenols and vitamins C and<br />
E, <strong>using</strong> their cupric ion reducing capability in the presence of<br />
neocuproine: CUPRAC Method. J. Agric. Food Chem. 52: 7970-<br />
7981.<br />
Ayaz FA, Kadioglu A, Reunanen M, Var M (1997). Phenolic acid and<br />
fatty acid composition in the fruits of Laurocerasus officinalis roem.<br />
and its cultivars. J. Food Comp. Anal. 10: 350-357.<br />
Ayaz FA, Reunanen M, Küçükislamoğlu M, Var M (1995). Seed fatty<br />
acid composition in wild form and cultivars of Lauorocerasus<br />
officinalis Roem. Pakistan J. Bot. 276(2): 305-308.<br />
Baytop T (2001). Therapy with medicinal plants in Turkey (past and<br />
present), 1st ed.; Istanbul University: Istanbul, Turkey, pp. 178-249.<br />
Benzie IFF, Straine JJ (1996). The ferric reducing ability of plasma<br />
(FRAP) as a measure of antioxidant power: The FRAP assay. Anal.<br />
Biochem. 239: 70-76.<br />
Gülçin İ (2010). Antioxidant properties of resveratrol: a structure–activity<br />
insight. Innovative Food Sci. Emerging Technol. 11: 210-218.<br />
Gülçin İ, Berashvili D, Gepdiremen A (2005). Antiradical and antioxidant<br />
activity of total anthocyanins <strong>from</strong> Perilla pankinensis Decne. J.<br />
Ethopharmacol. 101: 287-293.<br />
Kolayli S, Kara M, Tezcan F, Erim FB, Sahin H, Ulusoy E, Aliyazıcıoğlu<br />
R (2010). Comparative study of chemical and biochemical properties<br />
of different melon cultivars: Standard, hybrid, and grafted melons. J.<br />
Agric. Food Chem. 58: 9764-9769.<br />
Kolayli S, Aliyazıcıoğlu R, Ulusoy E, Karaoğlu Ş (2008). Antioxidant and<br />
antimicrobial activities of selected Turkish honeys. Hacettepe J. Biol.<br />
Chem. 36(2): 163-172.
Kolayli S, Küçük M, Duran C, Candan F, Dinçer B (2003). Chemical and<br />
antioxidant properties of Laurocerasus officinalis Roem. (cherry<br />
laurel) fruit grown in the black sea region. J. Agric. Food Chem. 51:<br />
7489-7494.<br />
Liyana-Pathirana CM, Shahidi F, Alasalvar C (2006). Antioxidant activity<br />
of cherry laurel fruit (Laurocerasus officinalis Roem.) and its<br />
concentrated juice. Food Chem. 99: 121-128.<br />
Marcucci MC, Woisky RG, Salatino A (1998). Use of aluminum chloride<br />
in the flavonoids quantification of propolis samples, Mensagem Doce,<br />
(in Portuguese). 46: 3-9.<br />
Murota K, Terao J (2003). Antioxidative flavonoid quercetin: Implication<br />
of its intestinal absorption and metabolism. Arch. Biochem. Biophys.<br />
417: 12-17.<br />
Peterson J, Dwyer J (1998). Flavonoids: Dietary occurrence and<br />
biochemical activity. Nutr. Res. 12: 1995-2018.<br />
Randhir R, Tong LY, Shetty K (2004). Stimulation of phenolics,<br />
antioxidant and antimicrobial activities in dark germinated mung bean<br />
sprouts in response to peptide and phytochemical elicitors. Process<br />
Biochem. 39: 637-646.<br />
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Stratil P, Klejdus B, Kuba V (2007). Determination of phenolic<br />
compounds and their antioxidant activity in fruits and cereals.<br />
Talanta, 71: 1741-1751.<br />
Slinkard K, Singleton VL (1977). Total phenol analysis: Automation and<br />
comparison with manual methods. Am. J. Enol. Viticult. 28: 49-55.<br />
Tezcan F, Kolaylı S, Sahin H, Ulusoy E, Erim BF (2011). Evaluation of<br />
organic acid, saccharide composition and antioxidant properties of<br />
some authentic Turkish honeys. J. Food Nutr. Res. 50: 33-40.
African Journal of Biotechnology Vol. 10(72), pp. 16300-16313, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.138<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Exhaust emissions and combustion performances of<br />
ethylene glycol monomethyl ether palm oil monoester<br />
as a novel biodiesel<br />
Da-Yong Jiang* 1 , Yun Bai 1 and He-jun Guo 2<br />
1 Research Institute of Communication, the Engineering University of CAPF, Xi’an Shaanxi, 710086, P R China.<br />
2 Xi’an Research Institute of high Technology, 503 staff room, Xi'an, Shaanxi, 710025, P.R. China.<br />
Accepted 14 October, 2011<br />
A novel biodiesel named ethylene glycol monomethyl ether palm oil monoester was developed. This<br />
fuel owns one more ester group than the traditional biodiesel. The fuel was synthesized and structurally<br />
identified through FT-IR, P1PH NMR analyses and GPC. Engine test results showed that when a tested<br />
diesel engine was fueled with this biodiesel in the place of 0# diesel fuel, engine-out smoke emissions<br />
decreased by 69.0 to 89.3%, and nitric oxide (NOx) also lessened significantly, but unburned<br />
hydrocarbon (HC) and carbon monoxide (CO) emissions generally do not change noticeably compared<br />
with pure diesel fuel. In the area of combustion performances, both engine in-cylinder pressure and its<br />
changing rate with crankshaft angle were increased to some extent for ethylene glycol monomethyl<br />
ether palm oil monoester because of the higher cetane number and shorter ignition delay. Due to<br />
certain amount of oxygen contained in the new biodiesel resulting in the low calorific value, the engine<br />
thermal efficiency dropped by 14.4% at record level when fueled with the biodiesel, which needs to be<br />
improved in the future.<br />
Key words: Biodiesel, ethylene glycol monomethyl ether palm oil monoester, engine-out emissions,<br />
combustion.<br />
INTRODUCTION<br />
In recent years, growing awareness of the complete<br />
depletion of petroleum oil in the near future and serious<br />
atmospheric pollution caused by automobile industry has<br />
inspired much research for clean alternative fuels to<br />
substitute for fossil fuels (Crooles, 2006; Pugazhvadivu<br />
and Jeyachandran, 2005; Kaplan et al., 2006). One of the<br />
most promising alternative energy sources is biodiesel.<br />
Biodiesel contains significantly less sulfur and nitrogen,<br />
which makes the fuel more environment-friendly than<br />
petroleum fuels. Because it is renewable and available<br />
worldwide, it has a bright future for practical application.<br />
A traditional biodiesel was used to be the methyl ester<br />
*Corresponding author. E-mail: wanghe717@163.com.<br />
Abbreviations: NOx, Nitric oxide; HC, hydrocarbon; CO,<br />
carbon monoxide, FT-IR; P1PH NMR; GPC, BMEP.<br />
of vegetable oil, which is prepared through transesterification<br />
of vegetable oils with alcohol. Many studies<br />
show that such biodiesel, containing certain amount of<br />
oxygen, can lead to remarkable reduction in diesel<br />
engine exhaust emissions (Usta et al., 2005; Lapuerta et<br />
al., 2005; Cetinkaya and Karaosmanoglu, 2007). Thus, it<br />
has been called a green fuel for diesel engine. However,<br />
since there is only one ester group (two oxygen atoms<br />
existing in each monoester molecule), the oxygen content<br />
in traditional biodiesel is at a comparatively lower level,<br />
so the reduction in emissions is not just as significant as<br />
anticipated when diesel engine burns it or its mixture with<br />
diesel fuel. Experiments have shown that the reduction<br />
rate in engine-out smoke emissions is correlated with the<br />
content of oxygen of the fuel.<br />
Therefore, to enhance the effect of traditional biodiesel<br />
in reducing engine-out smoke formation, the introduction<br />
of other ether group into its molecule was attempted. As
Table 1. Specification of the used chemicals.<br />
Jiang et al. 16301<br />
Chemical Density (kg/m 3 ) Boiling point (°C) Molecular weight Standard<br />
Palm Oil 917 ~ 944 - - Primes state<br />
Ethylene glycol monomethyl ether 965.0 134 76.10 Analytically pure<br />
Ethanol absolute 789 ~ 791 78 46.07 Analytically pure<br />
Potassa 950 - 23.5 Chemically pure<br />
(–OH) Absorption peak in the region of 3200~3600 cm -1 indicating that there was little fatty acid and ethanol in the treated palm oil (Figure<br />
1).<br />
Figure 1. infrared spectrogram of palm oil after treatment.<br />
is well known, palm oil comes <strong>from</strong> oil palm which is one<br />
of the plants with the highest rates of oil productivity, and<br />
it can be divided into RBD PO and RBD PKO extensively<br />
used for food. Hence, a novel biodiesel, ethylene glycol<br />
monomethyl ether palm oil monoester has been<br />
synthesized in this paper, which was also studied on the<br />
performance in reducing engine-out exhaust emissions<br />
and combustion.<br />
MATERIALS AND METHODS<br />
Preparation of palm oil monoester<br />
The new palm oil monoester was synthesized with a commercially<br />
refined palm oil and ethylene glycol monomethyl ether as reactants<br />
(Table 1). Initially, the selected palm oil was treated through<br />
extraction with ethanol as solvent at a temperature of 90°C to<br />
remove tiny amount of organic fatty acid of about 0.35 mg KOH/g in<br />
it, and was then purified under vacuum condition. FT-IR analysis<br />
justified that there was no vibration (Figure 1).<br />
The subsequent transesterification reaction was carried out in a<br />
flask with the acid-free palm oil of 600 ml and ethylene glycol<br />
monomethyl ether of 210 ml at a temperature of 80°C <strong>using</strong> 0.6%<br />
Wavelength (cm -1 )<br />
KOH as catalyst. Upon completion of the reaction which lasted for<br />
approximately 0.5 h, the crude product was first neutralized with<br />
diluted HCl solution and then separated <strong>from</strong> the water phase.<br />
Subsequently, it was purified in a vacuum to remove ethylene glycol<br />
monomethyl ether left over in the ester phase after 12 h. Finally, it<br />
was dried <strong>using</strong> CaCl2 agent, and the yield of palm oil monoester in<br />
laboratory can was close to 85%.<br />
Structure analysis<br />
The chemical structure analysis of the new palm oil monoester was<br />
conducted with FT-IR, P 1P H NMR and GPC analytical techniques<br />
(Davies and Henrissat, 1995; Yuan et al., 2008). The test conditions<br />
were also confirmed (Table 4 and Figure 3).<br />
FT-IR analysis was performed on an EQUINOX55 FT-IR<br />
spectrometer whose sample cell is KBr crystal. A superconducting<br />
NMR spectrometer of INOVA type made by VARIAN Company was<br />
employed to accomplish P 1P H NMR analysis. CDClB3B was selected<br />
as a solvent, and TMC as a standard reference. The spectrometer<br />
operating frequency was 400 MHz. The Gel permeation<br />
chromatography (GPC) 515-2410 system came <strong>from</strong> American<br />
Water Company including 515 HPLC pump, 717 auto sample, 2410<br />
refractive index detector, millennium 32 and styragel<br />
(HR2_HR3_HR4E). The experimental condition involved THF as
16302 Afr. J. Biotechnol.<br />
Table 2. Specification of DI diesel engine utilized.<br />
Parameter Magnitude Parameter Magnitude<br />
Bore 100 mm Rated speed 2300 rpm<br />
Stroke 115 mm Rated power 11 kw<br />
Connecting rod length 190 cm Combustion chamber ω shape<br />
Displacement 0.903 L Compression ratio 18<br />
For comparison study, 0# diesel fuel meeting China national technical specification was utilized and named B0. In the mean<br />
time, it was mixed with the palm oil monoester (B100) in a volume proportion of 3:1(B50) and 1:1(B25) to investigate the effect of<br />
the mixtures on engine-out exhaust emissions and combustion performances.<br />
Figure 2. IR spectrum of palm oil monoester.<br />
mobile phase, velocity of 1 ml/min and temperature detector below<br />
40°C.<br />
Engine test<br />
A single cylinder, four-stroke, water-cooled, DI diesel engine was<br />
adapted to complete determination of exhaust emissions and<br />
combustion performances. The technical parameters of the engine<br />
are tabulated in Table 2. An AVL DiSmoke 4000 smoke opacity<br />
indicator was used to record smoke intensity in extinction coefficient,<br />
and an on-line exhaust emission analyzer was utilized to examine<br />
CO, HC and NOx emitted. An angle calibration apparatus and a<br />
pressure transducer of Kistler type were used to pick up crankshaft<br />
angle and in-cylinder pressure. A CS22000 data gathering and<br />
analyzing system was utilized to process data.<br />
The engine tests were carried out under the following conditions:<br />
Ambient temperature of 23°C, humidity of 86%, and engine watercooling<br />
temperature of 95°C. In the experiment, when the engine<br />
Wavelength (cm -1 )<br />
approached a stable operation at a fixed steady state, all kinds of<br />
determinations were made according to certain well-defined<br />
procedures.<br />
RESULTS AND DISCUSSION<br />
Chemical structure<br />
Figure 2 and Table 3 list the main absorption frequencies<br />
displayed in IR spectrum obtained for the new palm oil<br />
monoester. No absorption peaks above 3100 cm -1 was<br />
found, implying that there is no hydroxyl group (-OH) in<br />
the synthesized product. Hence, it was easily confirmed<br />
that the product is an ester involving ether group.<br />
GPC can help to detect simultaneously the content of<br />
diglycerides, triglycerides, glycerol and fatty acid methyl
Figure 3. P 1P H NMR wave spectrogram of palm oil monoester.<br />
Table 3. FT-IR spectrum data of palm oil monoester.<br />
Frequency (cm -1 ) Group attribution Vibration type Strength<br />
2924.52 -CHB3B, -CHB2B BasB s<br />
2853.79 -CHB3B, -CHB2B BsB s<br />
1743.96 C=O s<br />
1462.60 -CHB2B m<br />
1378.26 -CHB3B m<br />
1166.77 C-O-C BasB m<br />
1119.05 C-O-C BsB m<br />
722.31 (CH2)n (n>4) - w<br />
Jiang et al. 16303<br />
Figure 3 and Table 4 illustrates P 1P H NMR data gained for the palm oil monoester. Chemical shift 5.342 ppm belongs to the<br />
protons attached to C=C group in the molecules, while chemical shift 4.226, 3.591 and 3.391 ppm, respectively belonged to<br />
the protons existing in the group -COOCH2CH2OCH3 in the order <strong>from</strong> the left to the right. More peaks occurring in the<br />
ester in the process of transesterification reaction with a<br />
refractive index detector. Table 5 illustrates that the main<br />
component of palm oil is fatty acid glycerin ester whose<br />
number average molecular weight mainly distributes in<br />
1426 or so, which is consistent with the known<br />
composition of palm oil. After transesterification, the peak<br />
of fatty acid ester (Mw 1426) almost disappeared, which<br />
meant that fatty acid glycerides have been transformed<br />
into fatty acid ether ester (biodiesel) thoroughly, while the<br />
peak of number average molecular weight of 566 has<br />
correspondingly appeared.<br />
Exhaust emissions<br />
Two types of engine operation modes running at 1600<br />
and 2200 rpm, respectively were selected to study the<br />
changes of exhaust emissions under different partial<br />
brake mean effective pressures (BMEP). Figure 4<br />
displays the effects of the new palm oil monoester on
16304 Afr. J. Biotechnol.<br />
Table 4. P 1P H NMR data of palm oil monoester.<br />
Chemical shift (ppm) Proton peak splitting Coupling constant (Hz) Peak area/proton number<br />
5.342 Triplet 6.4 1.281/-<br />
4.226 Triplet 3.6 1.81/2<br />
3.591 Triplet 3.6 2.00/2<br />
3.391 Singlet - 2.98/3<br />
(a) n=1 6 00 r pm<br />
(b) n = 2 2 00 rpm<br />
Figure 4. Effect of the palm oil monoester on smoke emissions.<br />
were burnt. However, in two load conditions, HC emissions<br />
increased with the oxygen content of fuel. The likely<br />
reason was attributed to the lower heating value of<br />
biodiesel. When biodiesel is mixed with diesel, the<br />
decreased ignition delay of mixture results in the<br />
reduction of heat in combustion process, so the temperature<br />
of gas starts to drop more suddenly, which<br />
Jiang et al. 16305<br />
makes the quenching layer thickening in chamber.<br />
Because fuel in quenching layer is difficult to vapor, there<br />
is increasingly unburned HC not participating in combustion<br />
as the quenching layer is thickened. When<br />
unburned HC is more than the decreased part of HC due<br />
to the extra oxygen <strong>from</strong> oxygenated fuels, HC emissions<br />
begin to increase.
16306 Afr. J. Biotechnol.<br />
Combustion performances<br />
(a) n = 1600 rpm<br />
(b) n = 2200 rpm<br />
Figure 5. Effect of the palm oil monoester on CO emissions.<br />
Figure 8 displays the test results of in-cylinder pressure<br />
when the tested diesel engine burnt B0, B25, B50, and<br />
B100 at 1600 rpm (0.49 MPa) and 2200 rpm (0.63 MPa).<br />
Pressure was not noticeably enhanced <strong>from</strong> the pressure<br />
biodiesel with the high oxygen content having more<br />
premixed combustion than diesel, which meant that the<br />
heat released was so concentrated that the maximum<br />
cylinder pressure rises. The in-cylinder peak pressure<br />
was raised about 0.3 MPa when burning B100 compared<br />
to B0 at 1600 r/min. Similar to the maximum explosion<br />
pressure at 2200 r/min, it was also clearly seen that the<br />
pressure was increased by 0.2 MPa when B100 is burnt<br />
in the place of B0.<br />
Moreover, Figure 9 exhibits the change rates of engine<br />
in-cylinder pressure with the crank angle at 1600 and<br />
2200 rpm respectively. From the two figures, it can be<br />
easily observed that in-cylinder pressure change rate was<br />
close under the engine running modes 1600 rpm, BMEP<br />
of 0.49 MPa and 2200 rpm, BMEP of 0.63 MPa when the<br />
diesel engine combusted four diesels. The two figures
(a) n = 1600 rpm<br />
(b) n = 2200 rpm<br />
Figure 6. Effect of the palm oil monoester on NOx emissions.<br />
also distinctly revealed that the ignition point of the new<br />
biodiesel and its mixture became shorter than that of<br />
diesel fuel. This meant that the new biodiesel indeed<br />
began to burn earlier than diesel fuel. Also, since the<br />
ignition point is mainly affected by the nature of the<br />
temperature and fuel, biodiesel's cetane number is higher<br />
than diesel with CN45 to 50 currently in China, so it owns<br />
good fire performance. Coupled with the temperature<br />
increased under high load, the vaporization of biodiesel<br />
was accelerated, so that premixed combustion also<br />
Jiang et al. 16307<br />
increased to make the ignition advance. The two aspects<br />
decided that ignition delay of biodiesel is less than the<br />
ordinary diesel in the conditions of high load.<br />
Furthermore, Figure 10 demonstrates the heat release<br />
rates of the diesel engine when it was fueled with the<br />
biodiesel, diesel fuel and their mixture. The heat release<br />
rate increased when the biodiesel replaced the reference<br />
diesel fuel during the experiment under two modes. Only<br />
at the mode 1600 rpm and BMEP of 0.49 MPa, was no<br />
change observed in the heat release rate. This indicated
16308 Afr. J. Biotechnol.<br />
(a) n = 1600 rpm<br />
(b) n = 2200 rpm<br />
Figure 7. Effect of the palm oil monoester on HC emissions.<br />
that the combustion velocity of the new palm oil<br />
monoester in diesel engine combustion chamber is much<br />
higher than diesel fuel as aforementioned. The reason is<br />
supposed to be that the oxygen contained in the new<br />
biodiesel is able to accelerate the engine combustion.<br />
The curves in the two figures also clearly showed that the<br />
new biodiesel indeed began to burn earlier than diesel<br />
fuel as earlier mentioned. This implies that the cetane
(a) n = 1 6 00 r pm , BMEP = 0. 49 MPa<br />
( b ) n = 22 00 r pm , BMEP = 0. 63 MPa<br />
Figure 8. Diesel engine in-cylinder pressure when burning different fuels.<br />
number of the new biodiesel is higher than that of diesel<br />
fuel. The reason why the new biodiesel has higher cetane<br />
number must be that the ether group introduced was<br />
more easily oxidized and released more heat at a given<br />
time to raise the temperature to accelerate fuel oxidation.<br />
The cetane number of the new biodiesel is being further<br />
determined in the laboratory.<br />
Jiang et al. 16309<br />
Finally, Figure 11 demonstrates the decreased engine<br />
thermal efficiency when the biodiesel and its blend with<br />
diesel fuel, respectively replaced the reference diesel fuel<br />
in the experiment. Result indicates that it decreased as<br />
the oxygen content of biodiesel fuel increases. A<br />
significant decrease by 0.62~1.11%, 3.28~5.82% and<br />
3.83~8.91% in engine thermal efficiency was also
16310 Afr. J. Biotechnol.<br />
(a) n = 1600 rpm, BMEP=0.49 MPa<br />
(b) n = 2200 rpm, BMEP=0.63 MPa<br />
Figure 9. Diesel engine in-cylinder pressure changing rate when burning<br />
different fuels.<br />
observed when the tested engine burnt B25, B50 and<br />
B100 in place of B0 at 1600 rpm. The similar result of<br />
1.47~6.19%, 4.85~10.84% and 5.64~14.4% was also<br />
attained at 2200 rpm. The reason is that the new<br />
biodiesel contains a certain amount of oxygen which can<br />
promote the more complete combustion of the biodiesel<br />
than diesel fuel. This may be due to the lower heat value<br />
of biodiesel, which causes local hypoxia in the<br />
combustion process.<br />
Conclusion<br />
A novel biodiesel named ethylene glycol monomethyl
(a) n = 1600 rpm, BMEP=0.49 MPa<br />
(b) n = 2200 rpm, BMEP=0.63 MPa<br />
Figure 10. Diesel engine heat release rate when burning different fuels.<br />
ether palm oil monoester, containing moreoxygen than<br />
traditional biodiesel has been prepared and structurally<br />
identified by three different technologies. When diesel<br />
engine was fueled with this palm oil monoester and its<br />
mixture with diesel fuel in the proportion of 1:1 or 1:3 by<br />
volume, due to certain amount of oxygen contained in<br />
them, engine-out exhaust emissions such as smoke, NOx<br />
Jiang et al. 16311<br />
was substantially reduced under partial load modes, but<br />
CO, HC emissions did not change significantly in general,<br />
but were rather raised under certain load.<br />
The combustion of the new palm oil monoester can<br />
lead to a little higher heat release rate than diesel fuel,<br />
and both engine in-cylinder pressure and its changing<br />
rate with crankshaft angle increase to some extent
16312 Afr. J. Biotechnol.<br />
(a) n = 1 6 00 r p m<br />
(b) n = 2 2 00 r p m<br />
Figure 11. Engine brake thermal efficiency when burning different fuels.<br />
because of its higher cetane number and shorter ignition<br />
delay than diesel fuel. Utilization of the new biodiesel can<br />
remarkably improve engine brake thermal efficiency,<br />
since palm oil monoester is ignited earlier during diesel<br />
engine operation.<br />
ACKNOWLEDGEMENT<br />
This research was supported by the National Natural<br />
Science Foundation of China (Grant no. 50976125).<br />
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B (2008). Heterologous expression of a gene encoding a<br />
thermostable beta-galactosidase <strong>from</strong> Alicyclobacillus acidocaldarius.<br />
Biotechnol Lett. 30(2): 343-348.
African Journal of Biotechnology Vol. 10(72), pp. 16314-16324, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2338<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Optimization of biodiesel production <strong>from</strong> rice bran oil<br />
via immobilized lipase catalysis<br />
Ying Xia Li 1 *, Jian Wei Yang 1 , Feng Li Hui 1 , Wei Wei Fan 1 and Ying Yang 1<br />
1 School of Life Science and Technology, Nanyang Normal University, Nanyang 473061, China.<br />
2 School of Life science, Wuhan University of Science and Technology Zhongnan Brach, Wuhan 430223, China.<br />
Accepted 5 October, 2011<br />
The lipase-catalyzed transesterification of rice bran oil and methanol for biodiesel production in hexane<br />
was investigated. The effects of different hexane weight ratio, methanol molar ratio, reaction<br />
temperature and immobilized lipase dosage on the total conversion were systematically analyzed by<br />
response surface methodology (RSM). RSM analysis showed good correspondence between<br />
experimental and predicted values. The optimal condition was 4.058 molar ratio of methanol to oil,<br />
temperature 42.295°C, 6.86% immobilized lipase and 0.624 hexane based on rice bran oil weight.<br />
Moreover, gas chromatography mass spectrometry showed that biodiesel was mainly composed of the<br />
methyl esters of hexadecanoic, 9,12-octadecadienoic and 9-octadecadienoic acid. The fourier transform<br />
infrared spectrum of biodiesel also showed the characteristic bands of C=O, O-C-O, C=C and –(CH2)n-.<br />
Key words: Rice bran oil, biodiesel, response surface methodology, gas chromatography mass spectrometry,<br />
fourier transform infrared spectrum.<br />
INTRODUCTION<br />
Biodiesel (fatty acid methyl esters) is a processed fuel<br />
mainly derived <strong>from</strong> vegetable oils, animal fats and waste<br />
oil. It can replace a significant percentage of petroleum<br />
diesel in compression ignition diesel engines due to the<br />
similarity of its properties to those of petroleum light oil<br />
(Joshi et al., 2008; Fukuda et al., 2001). Biodiesel have<br />
received considerable attention in recent years as a<br />
renewable, non-toxic and biodegradable fuel. Currently,<br />
biodiesel is produced <strong>from</strong> vegetable oils in Europe and<br />
North America, and <strong>from</strong> waste edible oil in Japan and<br />
China (Lara Pizarro and Park, 2003; Wang et al., 2007).<br />
Biodiesel <strong>from</strong> no-edible vegetable oils has emerged as a<br />
viable alternative source. Rice bran is a byproduct of rice<br />
process with about 16% fat content. The output of rice<br />
bran is about 9 million tons in China every year; therefore<br />
rice bran oil may be a source of biodiesel.<br />
Biodiesel is usually produced through transesterification<br />
with alkali catalysts because of high conversion<br />
rate. However, the alkali process has several drawbacks<br />
including energy intensiveness, difficulty of glycerol<br />
recovery, removal of the alkaline catalyst <strong>from</strong> the product<br />
*Corresponding author. E-mail: liyx108@ 163.com.<br />
and treatment of the highly alkaline wastewater (Shimada<br />
et al., 1999). Utilization of lipase as catalyst for biodiesel<br />
production has a higher potential compared with acid or<br />
alkaline as catalyst because the lipase- catalyzed<br />
process for synthesizing biodiesel can be carried out<br />
under mild conditions without producing soap, and the<br />
purification of fatty acid methyl esters is simple to<br />
accomplish (Lee et al., 2006; Jeon and Yeom, 2010;<br />
Nelson et al., 1996). However, this method has not been<br />
used in industrial production of biodiesel due to the<br />
relatively high price and short operational life. Immobilized<br />
lipases have generally been used to alter the<br />
properties of an enzyme by improving its operational<br />
stability and obtain reusable enzyme derivatives enabling<br />
the recycling of the enzyme, which reduces the operational<br />
costs and makes lipase-catalyzed reactions more<br />
attractive. A suitable reaction medium can also preserve<br />
both the catalytic activity and the stability of the enzyme<br />
in the synthetic process (Wyss et al., 2006).<br />
In this study, a response surface analysis for biodiesel<br />
production <strong>from</strong> rice bran oil with immobilized lipase was<br />
investigated. Methanol substrate molar ratio, enzyme<br />
amount, hexane amount and reaction temperature were<br />
four important parameters examined. In addition, the<br />
properties of biodiesel were also analyzed by infrared
Table 1. Independent variables and their levels for central composite design.<br />
Independent variable Code<br />
-1<br />
Variable level<br />
0 +1<br />
Methanol molar ratio X1 2 4 6<br />
Enzyme amount (%) X2 3 6 9<br />
hexane weight ratio X3 0.3 0.6 0.9<br />
Reaction temperature(°C) X4 30 40 50<br />
spectra and GC- linked mass spectrometry (GC-MS).<br />
MATERIALS AND METHODS<br />
Rice bran oil was obtained locally with average molecular weight<br />
867.90 g/mol. Lipase was <strong>from</strong> Candida rugosa. Silica was<br />
purchased <strong>from</strong> Aldrich without further purification. All other<br />
chemicals were obtained commercially and of analytical grade.<br />
Immobilization of lipase<br />
Five grams of silica was mixed with 3% methanesulfonic acid<br />
aqueous solution 102°C for 4 h with constant mixing. The silica was<br />
then washed with distilled water, dried with vacuum drier and then<br />
mixed with 3-chloropropyltrimethoxysilane and acetone at 80°C for<br />
6 h. White precipitate was collected by filtration, washed with water<br />
and dried at room temperature in air. Finally, the product was<br />
calcined in air at 500°C for 5 h in a tube furnace to remove the<br />
organic templates. The treated silica was then suspended in 20 ml<br />
of 1 mM phosphate buffer solution (pH = 7). 2 ml of glutaraldehyde<br />
(25% v/v) was added to this solution, followed by incubation at<br />
room temperature for 2 h to activate the silica which was then<br />
washed with distilled water and dried at 60°C for 2 h. Furthermore,<br />
50 mg activated silica and 50mg lipase were added to 25 ml<br />
phosphate buffer (pH = 7.0) and stirred by a magnetic stirrer at 4°C<br />
for 6 h. The supernatant was separated <strong>from</strong> solid material by<br />
centrifugation, and the solid material was washed with phosphate<br />
buffer, and then dried overnight at room temperature.<br />
Apparatus and experimental procedure<br />
The transesterification reactions were carried out in shaking flasks<br />
and heated to the reaction temperature on a reciprocal shaker. A<br />
standard reaction mixture consisted of oil, hexane, methanol and<br />
immobilized lipase. The methanol was added every 12 h. Finally,<br />
100 μL of samples were taken after 48 h and centrifuged to obtain<br />
the upper layer for gas chromatographic analysis.<br />
Experimental design<br />
A box-Behnken design was employed to study the response Y,<br />
namely methyl conversion. The independent variables were X1, X2,<br />
and X3 representing methanol substrate molar ratio, enzyme<br />
amount and reaction temperature, respectively. The settings for the<br />
independent variables were as follows (low/ high value): methanol<br />
molar ratio 2:1, 4:1, 6:1), enzyme concentration (3, 6 and 9%),<br />
hexane weight ratio (0.3, 0.6 and 0.9) and reaction temperature (30,<br />
40, 50°C). Each variable to be optimized was coded at three levels<br />
-1, 0 and +1. The experimental design is shown in Table 1. In order<br />
to avoid bias, 27 runs were performed in random order.<br />
As for the optimization for methyl ester conversion, the<br />
Li et al. 16315<br />
responses were analyzed <strong>using</strong> SPSS 16.0 and Matlab R 2009b<br />
software. A quadratic polynomial regression model was assumed<br />
for predicting response. The model proposed for each response of<br />
Y was;<br />
Y=A0+ A1X1+ A2X2+ A3X3+ A4X4+ A5X1X2+ A6X1X3+ A7X1X4+ A8X2X3+<br />
A9X2X4+ A10X3X4+ A11X1 2 + A12X2 2 + A12X3 2 + A14X4 2 (1)<br />
Where, Y is the fatty acid methyl ester (FAME) conversion<br />
percentage; A0 is constant; A1, A2, A3 and A4 are linear coefficients;<br />
A5, A6, A7, A8, A9 and A10 are cross-product coefficients; A11, A12, A13<br />
and A14 are quadratic coefficients. In addition, the fitness of the<br />
model was evaluated by the coefficient of determination (R) and the<br />
analysis of variance (ANOVA). Quadratic polynomial equations<br />
were attained by holding one of the independent variances at a<br />
constant value and changing the level of the other variables.<br />
Estimation of fatty acid methyl ester<br />
The fatty acid methyl ester content in the reaction mixture was<br />
analyzed on GC-14B gas chromatograph equipped with FFAP<br />
capillary column (0.32 mm × 25 m) and FID detector. The column<br />
temperature was kept at 150°C for 0.5 min, raised to 250°C at 15°C<br />
/min and maintained at this temperature for 10 min. The<br />
temperatures of the injector and detector were set at 245 and<br />
250°C, respectively. Nitrogen at 70 ml/min was used as the carrier<br />
gas. Pentadecanoic acid (C15:0, Sigma) methyl ester at 2 mg/ml<br />
was used as the <strong>internal</strong> standard. The conversion of biodiesel was<br />
calculated as the percentage by weight of fatty acid methyl esters<br />
formed divided by the weight of feed stock initially taken for the<br />
reaction.<br />
Composition analysis of biodiesel<br />
The composition of biodiesel <strong>from</strong> rice bran oil was analysed by<br />
Thermo trace GC-MS (DSQII) equipped with a Varian VF-5ms<br />
column. The temperature of ion source was 250°C and the<br />
scanning range was <strong>from</strong> 45 to 450.<br />
Fourier transform infrared analysis<br />
The infrared absorption spectra of the samples were obtained in a<br />
fourier transform infrared spectrometer (NICOLET 5700, Thermo<br />
Electron Corporation) <strong>using</strong> KBr tablets in the range of 4000- 400<br />
cm -1 .<br />
RESULTS AND DISCUSSION<br />
RSM model fitting<br />
The major objective of this study was the development
16316 Afr. J. Biotechnol.<br />
Table 2. Central composite design and experiment data.<br />
Run X1 X2 X3 X4 True model (%) RSM model (%) Error (%)<br />
1 -1 -1 0 0 47.4 46.66 1.56<br />
2 -1 1 0 0 55.74 53.84 3.41<br />
3 1 -1 0 0 45.68 47.30 3.55<br />
4 1 1 0 0 60.86 61.32 0.75<br />
5 0 0 -1 -1 71.93 71.35 0.81<br />
6 0 0 -1 1 67.93 67.98 0.07<br />
7 0 0 1 -1 70.86 70.47 0.06<br />
8 0 0 1 1 72.17 72.41 0.33<br />
9 -1 0 0 -1 53.74 55.58 3.42<br />
10 -1 0 0 1 54.37 54.34 0.06<br />
11 1 0 0 -1 57.58 59.11 2.66<br />
12 1 0 0 1 59.27 58.91 0.61<br />
13 0 -1 -1 0 66.09 65.95 0.21<br />
14 0 -1 1 0 54.1 55.15 1.94<br />
15 0 1 -1 0 63.45 63.98 0.74<br />
16 0 1 1 0 76.61 78.32 2.23<br />
17 -1 0 -1 0 46.34 45.1 2.68<br />
18 -1 0 1 0 53.37 50.71 4.98<br />
19 1 0 -1 0 56.45 52.99 6.13<br />
20 1 0 1 0 55.8 50.93 8.73<br />
21 0 -1 0 -1 71.44 68.68 3.86<br />
22 0 -1 0 1 70.15 66.53 5.16<br />
23 0 1 0 -1 80.4 77.84 3.18<br />
24 0 1 0 1 82.03 78.57 4.22<br />
25 0 0 0 0 89.35 89.21 0.15<br />
26 0 0 0 0 89.65 89.21 0.49<br />
27 0 0 0 0 91.02 89.21 1.99<br />
Table 3. Analysis of variance (ANOVA) for the fitted quadratic polynomial model.<br />
Model Sum of squares df Mean square F<br />
Regression 4538.989 14 324.213 45.720<br />
Residual 85.096 12 7.091<br />
Total 4624.085 26<br />
R 2 = 0.982, Adj R 2 = 0.960; **significant at 1% level.<br />
and evaluation of a statistical approach to optimize the<br />
lipase-catalyzed process. The statistical combination of<br />
the independent variables in coded and natural values<br />
along with the predicted and experimental response is<br />
presented in Table 2. The statistical significance of this<br />
model was evaluated by the F-test (Table 3), which<br />
indicated that this regression is statistically significant at<br />
99% probability level. The coefficient of determination<br />
(R 2 ) was 0.982, indicating that the model can explain<br />
982% of the variability. The regression coefficients and<br />
the corresponding significance are presented in Table 4.<br />
From the significance of each model term, it could be<br />
concluded that the regression coefficients of X1, X2 X3, X4,<br />
2 2 2 2<br />
X2X3, X1 , X2 , X3 and X4 had significant effect on the<br />
methyl ester yield.<br />
Furthermore, the experimental results (Table 2) of this<br />
analysis were used to develop a linear equation which<br />
showed the relationships between degree of conversion,<br />
molar ratio of methanol to oil, reaction temperature,<br />
hexane and catalyst concentration. By considering the<br />
coded values, the following expression was presented as<br />
follows:<br />
Y = -174.942 + 53.543X1 + 9.479X2 + 127.56X3 + 4.143X4<br />
+ 0.285X1X2 - 3.198X1X3 + 0.013X1X4 + 6.986X2X3 +<br />
2 2 2<br />
0.024X2X4 + 0.442X3X4 - 6.605X1 - 1.167X2 - 142.839X3
2<br />
- 0.058X4<br />
(2)<br />
The regression Equation (2) was solved by MATLAB 7.0<br />
software. It was indicated that the optimum parameters<br />
were 4.058 molar ratio of methanol to oil, temperature<br />
42.295°C, 6.86% immobilized lipase and 0.624 hexane<br />
weight based on rice bran oil weight. Many parameters<br />
can influence the performance of methyl ester conversion<br />
<strong>from</strong> rice bran oil. Equation 2 indicated that methyl ester<br />
conversion had a complex relationship with independent<br />
variables that encompass both first and second-order<br />
polynomials. The best way of expressing the effect of any<br />
parameter on the methyl ester yield within the experimental<br />
parameters under investigated was to generate<br />
response surface plots of the equation (Figures 1 to 3) as<br />
a function of the interactions of any two of the variables<br />
by holding the other one at middle value. From the shape<br />
of contour plots, the significance of the mutual<br />
interactions between the independent variables could be<br />
estimated. An elliptical prole of the contour plots indicates<br />
remarkable interaction between the independent<br />
variables. Figures 1 to 3 show similar relationships with<br />
respect to the effects of each variable. The response<br />
obtained were convex nature suggesting that there were<br />
well-defined optimum operating conditions.<br />
Contour plot and response surface curve indicating<br />
predicted response surface of methyl ester conversion<br />
percentage as a function of methanol molar ratio and<br />
enzyme amount is presented in Figure 1. It was shown<br />
that the methyl ester yield was sensitive to the methanol<br />
molar ratio and enzyme amount. An increase in methyl<br />
ester yield was observed with the increase of methanol<br />
molar ratio and enzyme amount at first. However, the<br />
trend was reversed when the methanol molar ratio a<br />
certain value. The molar ratio of ethanol to oil is one of<br />
Table 4. Results of regression analysis of a full second-order<br />
polynomial model.<br />
Term Coefficient estimated Significance<br />
Intercept -174.942 0.000<br />
X1 53.543 0.000<br />
X2 9.479 0.004<br />
X3 127.56 0.000<br />
X4 4.143 0.002<br />
X1X2 0.285 0.223<br />
X1X3 -3.198 0.175<br />
X1X4 0.013 0.846<br />
X2X3 6.986 0.000<br />
X2X4 0.024 0.594<br />
X3X4 0.442 0.338<br />
X1 2 -6.605 0.000<br />
X2 2 -1.167 0.000<br />
X3 2 -142.839 0.000<br />
X4 2 -0.058 0.000<br />
Li et al. 16317<br />
the most important variables affecting ester conversion.<br />
Stoichiometric ratio for methanol to oil is 3:1, while the<br />
molar ratio higher than theoretical value would be needed<br />
to drive the reaction to completion in practice<br />
(Tippayawong et al., 2005). From the results, the highest<br />
conversion was obtained at the 4.058: 1 molar ratio.<br />
Higher methanol concentrations were found to cause<br />
irreversible denaturation of the lipase. This may be due to<br />
the fact that methanol is insoluble in the oil at high concentration,<br />
which made proteins unstable and deprived<br />
“indispensable water” of enzyme (Qin et al., 2008). Also,<br />
methyl ester decreased with excessive enzyme amount<br />
due to decrease of enzyme activity caused by lipase<br />
aggregation (Masaru et al., 2001; Balaraman and<br />
Soundar, 2005). The elliptical profile of the contour plot<br />
suggested that the interaction between the methanol<br />
molar ratio and enzyme amount was strong.<br />
Interaction of methanol molar ratio and temperature on<br />
methyl ester conversion is shown in Figure 2. Influence of<br />
methanol molar ratio and temperature on production of<br />
methyl ester indicated significant variation both above<br />
and below the optimum values. Reaction temperature<br />
also had significant effect on the activity and stability of<br />
the lipase. Relative higher temperature can activate the<br />
substrate molecules, reduce the viscosity of reaction and<br />
lead to a higher conversion. However, too high temperature<br />
may lead to lipase denaturation and the loss of<br />
solvent through evaporation (Tippayawong et al., 2005).<br />
Response surface curve and contour plot showing<br />
predicted response surface of methyl ester conversion as<br />
a function of hexane content and methanol molar ratio<br />
was revealed (Figure 3). An increase in methyl ester yield<br />
was observed with the increasing of hexane, and 0.624<br />
hexane weight ratio to oil was the optimal amount for this<br />
reaction. This might be caused by the improved solubility
16318 Afr. J. Biotechnol.<br />
Figure 1. Response surface curve (A) and contour plot (B) showing predicted response surface of<br />
methyl ester conversion as a function of methanol molar ratio and enzyme amount (temperature =<br />
42.295°C, hexane weight ratio = 0.624).<br />
of methanol and glycerol in the reaction medium,<br />
therefore lipase can maintain high catalytic activity. The<br />
ME yield decreased gradually by further increasing the<br />
amount of hexane due to the dilution of reactants as more<br />
hexane present in the reaction (Zheng et al., 2009).<br />
Qualitative analysis of FAME<br />
Chromatogram of biodiesel <strong>from</strong> rice bran oil (Figure 4)<br />
showed that there were seven fatty acid methyl esters<br />
analyzed with MS (data not show). The composition of
Figure 2. Response surface curve (A) and contour plot (B) showing predicted response<br />
surface of methyl ester conversion as a function of methanol molar ratio and temperature<br />
(immobilized lipase = 6.86%, hexane weight ratio = 0.624).<br />
the biodiesel analyzed by GC-MS suggested that there<br />
were three main fatty acid methyl esters including<br />
hexadecanoic acid methyl ester (C17H34O2), 9,12-<br />
octadecadienoic acid methyl ester (C19H34O2) and 9octadecadienoic<br />
acid methyl ester (C19H36O2). These<br />
components made up more than 90% of the total<br />
biodiesel. Some minor methyl esters were also detected<br />
and shown in Table 5. Polyunsaturated fatty acids with<br />
Li et al. 16319<br />
four or more double bonds, which are susceptible to<br />
oxidation during storage, thus reduced the acceptability<br />
for production of biodiesel (Chisti, 2007). The GC-MS<br />
study demonstrated that the biodiesel <strong>from</strong> rice bran oil<br />
contains mainly saturated and mono-unsaturated fatty<br />
acids (~68% of the total fatty acyl methyl esters), which<br />
advocated its high oxidative stability. Thus, rice bran oil<br />
could be considered as a potential organism for biodiesel
16320 Afr. J. Biotechnol.<br />
production.<br />
Fourier transform Infrared Spectroscopy<br />
Figure 3. Response surface curve (A) and contour plot (B) showing predicted response<br />
surface of FAME conversion as a function of methanol molar ratio and hexane weight<br />
ratio (immobilized lipase = 6.86%, temperature = 42.295°C).<br />
The fourier transform infrared spectrum of rice bran oil is<br />
shown in Figure 5(A). The absorption bands at 2925.4<br />
and 2855.3 cm -1 was attributed to –CH2- group and the<br />
band at 1745 cm -1 to the carbonyl group. The band at<br />
1163.4 cm -1 was ascribed to C-O-C <strong>from</strong> the ester<br />
functional group and at 709.9 cm -1 related to the -(CH2)n-<br />
sequence of aliphatic chains of fatty acids. In addition,<br />
Figure 5B displayed the fourier transform infrared<br />
spectrum of biodiesel <strong>from</strong> the rice bran oil. The spectrum<br />
presented a band at 3007.3 cm -1 ascribed to the H-C=<br />
group and the strong band at 1743.4 cm -1 to the ester
Li et al. 16321<br />
Figure 4. (A) Gas chromatography spectrum of FAME, mass spectra of (B) hexadecanoic acid methyl ester, (C), 12-octadecadienoic acid methyl ester, and (D) 9octadecadienoic<br />
acid methyl ester.<br />
.
16322 Afr. J. Biotechnol.<br />
Figure 4. Continued.<br />
.
Table 5. The retention times and content of each fatty acid methyl ester in biodiesel<br />
Fatty acid methyl ester content (%) Retention time (min) Content (%)<br />
Methyl tetradecanoate (C15H30O2) 5.44 0.37<br />
Hexadecanoic acid methyl ester (C17H34O2) 6.73 21.39<br />
9,12-Octadecadienoic acid methyl ester (C19H34O2) 8.18 32.15<br />
9-Octadecadienoic acid methyl ester (C19H36O2) 8.25 42.39<br />
Octadecadienoic acid methyl ester (C19H38O2) 8.45 2.45<br />
11-Eicosenoic acid methyl ester (C21H40O2) 10.26 0.46<br />
Eicosenoic acid methyl ester (C21H42O2) 10.53 0.79<br />
Figure 5. Fourier transform infrared spectroscopy rice bran oil (A) and biodiesel (B)<br />
Li et al. 16323
16324 Afr. J. Biotechnol.<br />
C=O axial deformation and two medium bands at 110.6<br />
and 1190.3 cm -1 related to C-O bond.<br />
Conclusion<br />
In this study, hexane was used as the reaction medium<br />
for the preparation of biodiesel production through the<br />
immobilized lipase-catalyzed transesterification of rice<br />
bran oil and methanol. By considering the coded values,<br />
the regression expression was presented as;<br />
Y= -174.942 + 53.543X1 + 9.479X2 + 127.56X3 + 4.143X4<br />
+ 0.285X1X2 - 3.198X1X3 + 0.013X1X4 + 6.986X2X3 +<br />
2 2 2<br />
0.024X2X4 + 0.442X3X4 - 6.605X1 - 1.167X2 - 142.839X3<br />
- 0.058X4 2<br />
The optimal conditions was 4.058 molar ratio of methanol<br />
to oil, temperature 42.295°C, 6.86% immobilized lipase<br />
and 0.624 hexane based on rice bran oil weight by RSM<br />
analysis. Moreover, GC-MS showed that biodiesel was<br />
mainly composited of the methyl esters of hexadecanoic,<br />
9,12-octadecadienoic and 9-octadecadienoic acid.<br />
Furthermore, the infrared spectrum of biodiesel showed<br />
the characteristic bands of C=O, O-C-O, C=C and –<br />
(CH2)n-.<br />
ACKNOWLEDGEMENTS<br />
This work was financially supported by research start-up<br />
costs of high- level personnel of the Nanyang Normal<br />
University (ZX 2011003).<br />
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Tippayawong N, Kongjareon E, Jompakdee W (2005). Ethanolysis of<br />
soybean oil into biodiesel: process optimization via central composite<br />
design. J. Mech. Sci. Technol. 19(10): 1902-1909.<br />
Wang Y, Ou SY, Liu PZ, Zhang ZS (2007). Preparation of biodiesel <strong>from</strong><br />
waste cooking oil via two-step catalyzed process. Energ. Convers.<br />
Manage. 48: 184-188.<br />
Wyss A, von Stockar U, Marison IW (2006). A novel reactive<br />
perstraction system based on liquid-core microcapsules applied to<br />
lipase-catalyzed biotransformations. Biotechnol. Bioeng. 93(1): 28-<br />
39.<br />
Zheng Y, Quan J, Ning X, Zhu LM, Jian B, He ZY (2009). Lipasecatalyzed<br />
transesterification of soybean oil for biodiesel production in<br />
tert-amyl alcohol. World. J. Microbiol. Biotechnol. 25: 41-46.
African Journal of Biotechnology Vol. 10(72), pp. 16325-16329, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1600<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Study on correlation between polymorphism of<br />
adiponectin receptor gene and essential hypertension<br />
of Xinjiang Uygur, Kazak and Han in China<br />
Wang Zhong 1 *, Chen Shaoze 1 , Wang Daowen 2 , Wang Li 1 , Zhai Zhihong 1 , Duan Juncang 1 ,<br />
Zhang Wangqiang 1 and Zhang Jingyu 3<br />
1 The Second Division of Cardiology, First Affiliated Hospital of Shihezi University School of Medicine, Xinjiang, Shihezi,<br />
832008, China.<br />
2 The Department of Cardiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology,<br />
Hubei, Wuhan, 430030, China.<br />
3 Department of Epidemiology, Shihezi University School of Medicine, Xinjiang, Shihezi 8320002, China.<br />
Accepted 19 September, 2011<br />
Studies have shown that adiponectin receptors expression was positively correlated with insulin<br />
sensitivity and insulin resistance was closely related with incidence and development of hypertension.<br />
The aim of this study was to examine the correlation between the polymorphism of two adiponectin<br />
receptor allelic genes, rs12045862T/C and rs7539542G/C, and essential hypertension of Xinjiang Uygur,<br />
Kazak and Han in 309 cases of patients with essential hypertension in Xinjiang Uygur, 264 cases of<br />
patients with essential hypertension in Kazak and 368 cases of patients with essential hypertension in<br />
Han. The control group selected 300 cases of normal Uygur, 275 cases of normal Kazak and 349 cases of<br />
normal Han. The TaqMan probe was used to test the polymorphism of adiponectin receptor gene in two<br />
alleles, rs12045862T/C and rs7539542G/C. The gene polymorphism of adiponectin receptor gene<br />
rs12045862T/C in essential hypertension group of Xinjiang Uygur, Kazak and Han had no significant<br />
difference compared with the control group (P>0.05). While the gene polymorphism of adiponectin<br />
receptor gene rs7539542G/C in essential hypertension group of Xinjiang Uygur, Kazak and Han had no<br />
significant difference compared with the control group (P>0.05). In conclusion, the gene polymorphism<br />
of adiponectin receptor gene rs12045862T/C and rs7539542G/C were not significantly associated with<br />
essential hypertension in Xinjiang Uygur, Kazak and Han, which was the same in the three ethnic<br />
groups.<br />
Key words: Adiponectin receptor, gene polymorphism, essential hypertension.<br />
INTRODUCTION<br />
Essential hypertension (EH) is a long-term interaction<br />
result of the genetic factors and environmental factors,<br />
and its etiology and pathogenesis is very complex<br />
(Williams, 1991). EH is a multiple gene disease (Lifton,<br />
1996), and the genetic factors take on 30 to 50% in the<br />
rate of occurrence in the EH. Studies have indicated that<br />
*Corresponding author. E-mail: wangzshz@163.com. Tel:<br />
86-993-2859226 or 86-13899525766.<br />
the incidence of this disease has obvious tendency of<br />
familial aggregation and the genetic factors determine<br />
individual susceptibility to high blood pressure. Hence, the<br />
studies on hypertension susceptibility genes are more and<br />
more attended. Study found that insulin resistance was<br />
closely related with incidence and development of<br />
hypertension, and was an independent risk factor for<br />
cardiovascular disease. At least half of patients with<br />
essential hypertension exhibit insulin resistance.<br />
Adiponectin receptors (ADIPOR) were cloned in 2003<br />
and the expression of adiponectin receptors is closely
16326 Afr. J. Biotechnol.<br />
Table 1. Sequences of probes and primers.<br />
rs ID Primer (5'→3') Probe (5'→3') Allele<br />
rs12045862<br />
rs7539542<br />
F 5'-CTCCTTTGCCCCTCTCCAG-3'<br />
R 5'-AGAACCCCTACTCTAAAAAGATGTGG-3'<br />
F 5'-CAAATAATCAAGACCATACATGTGAAATCT-3'<br />
R 5'-AAAGAAACCTGCTATCATTGCTATGTATC-3'<br />
F, Forward primer; R, reverse primer; FAM, HEX, fluorescence dyes.<br />
related with insulin resistance (Bluher M et al., 2006).<br />
Studies (Civitarese et al., 2004) have shown that<br />
adiponectin receptors expression was positively corre-<br />
lated with insulin sensitivity. Adiponectin receptor gene<br />
variants were also correlated with obesity and insulin<br />
resistance (Stefan et al., 2005; Siitonen et al., 2006). The<br />
adiponectin receptors were perhaps significantly related<br />
to blood pressure through insulin resistance and obesity.<br />
Some studies have shown that adiponectin receptor 1<br />
(ADIPOR1) and adiponectin receptor gene 2 (ADIPOR2)<br />
gene polymorphisms have correlation with fasting insulin<br />
levels in 2-h postprandial insulin levels and body mass<br />
index.<br />
Therefore, based on the relevant pathophysiological<br />
mechanisms in type 2 diabetes and hypertension, we<br />
hypothesized that adiponectin receptor gene poly-<br />
morphism may have some relevance with hypertension,<br />
and designed a case-control study. In Xinjiang Uygur,<br />
Kazak and Han populations, adiponectin receptor 1<br />
(ADIPOR1) gene and adiponectin receptor 2 (ADIPOR2)<br />
genes of the two allele’s rs12045862T/C and<br />
rs7539542G/C were detected and the correlation between<br />
adiponectin receptor gene polymorphism and essential<br />
hypertension in Xinjiang Uygur, Kazak and Han were<br />
investigated.<br />
MATERIALS AND METHODS<br />
Three hundred and nine cases of patients with essential<br />
hypertension in Xinjiang Uygur, 264 cases of patients with essential<br />
hypertension in Kazak and 368 cases of patients with essential<br />
hypertension in Han were selected <strong>from</strong> May to December in 2008<br />
for Xinjiang Uygur epidemiological investigation, while the control<br />
group selected 300 cases of normal Uygur, 275 cases of normal<br />
Kazak and 349 cases of normal Han. Diagnosis of essential<br />
hypertension met the prevention and treatment guide of<br />
hypertension in China in 2004. The patients with essential<br />
hypertension had no complications with clinical symptoms, did not<br />
take any blood pressure medicine before 2 weeks epidemiological<br />
survey and maintained relative stability between diet and body<br />
weight. After taking history, physical examination and relevant<br />
biochemical tests, patients with serious liver and kidney dysfunction,<br />
secondary hypertension, diabetes, stroke, unstable angina,<br />
myocardial infarction, two levels of cardiac function or more,<br />
pregnancy, lactation or long-term use of contraceptive drugs were<br />
exempted. All subjects were informed of the details and possible<br />
5' FAM-CTCATCCTTCCCCCAA-MGB 3'<br />
5' HEX-CTCATCCCTCCCCCA-MGB 3'<br />
5' FAM-TGCCAAGTGTCTTCTGT-MGB 3'<br />
5' HEX-TGCCAAGTCTCTTCTGT-MGB 3'<br />
hazards, and signed informed consent.<br />
DNA extraction and genotyping<br />
The peripheral venous blood of patients and populations in control<br />
group were collected after fasting for 12 to 14 h <strong>using</strong> EDTA-Na<br />
anticoagulation. After centrifugation with 3000 rev / min (rpm) for 15<br />
min, within 30 min the plasma was kept at -80°C in a refrigerator.<br />
The human genomic DNA extraction kit produced by the Japanese<br />
FUJIFILM was used. The genomic DNA of all the samples were<br />
extracted in strict accordance with the instructions provided. DNA<br />
concentration of TE solution <strong>from</strong> extracted DNA samples was<br />
measured by DNA / RNA quantitative machine, then concentration<br />
was diluted to 10 ng/μL, and saved in -80°C refrigerator for use. Two<br />
loci of fluorescent probes and PCR primers were designed and<br />
provided by Shanghai Jikang Biotechnology Co. Ltd. All fluorescent<br />
probes were TaqMan MGB probe, containing MGB modified gene,<br />
the 5' end labeled with reporter fluorescent group and 3' end labeled<br />
with non-fluorescent quenching moiety (primers and probe<br />
sequences in Table 1).<br />
PCR amplification system, reaction conditions and analysis of<br />
genotype<br />
Two loci of the PCR amplification system were as follows: the total<br />
reaction volume was 5 μL, including 1 × Universal Mastermix (ABI),<br />
two probes with a final concentration of 0.2 μmol/L, upstream and<br />
downstream primers with the final concentration of 1 μmol/L, and<br />
genomic DNA with final concentration of 1 ng/μL. Reaction<br />
conditions: 50°C for 2 min, 95°C denaturation for 10 min, then 95°C<br />
for 15 s, 60°C for 1 min for 50 cycles. ABI 7900HT thermal cycler<br />
was applied for amplification. Automatic sequence detection system<br />
software 2.1 (confidence interval set to 95%) was used to<br />
distinguish between the types of alleles. A total of 10% of all<br />
genotypes were repeated in independent PCRs to check for<br />
consistency and to ensure intraplate and interplate genotype quality<br />
control. No genotyping discrepancies were detected between the<br />
repeated samples. In addition, all the DNA samples for cases and<br />
controls were run in the same batches.<br />
Statistical analysis<br />
Statistical analysis was finished by SPSS13.0 software.<br />
Measurement data with normal distribution are presented as mean ±<br />
standard error. The genotype equilibrium degrees were consistent<br />
with Hardy-Weinberg, and the genotype and allele frequencies<br />
between case groups and control groups were compared <strong>using</strong><br />
Chi-square (χ2) test. Count data between groups were compared<br />
T<br />
C<br />
G<br />
C
Table 2. Baseline characteristics of three ethnic samples.<br />
Zhong et al. 16327<br />
Kazak Uygur Han<br />
Characteristic Control Hypertension Control Hypertension Control Hypertension<br />
(n = 275) (n = 264) (n = 300) (n = 309) (n = 349) (n = 368)<br />
Age (years) 51.6 ± 12.5 50.0 ± 11.4 53.9 ± 9.7 54.2 ± 8.8 48.1 ± 9.9 47.1 ± 10.7<br />
Men (%) 45.1 46.6 52.1 51.7 50.7 49.8<br />
BMI (kg/m 2 ) 23.5 ± 3.4 27.6 ± 3.9* 27.4 ± 4.4 27.6 ± 4.8 22.56 ± 3.6 25.28 ± 2.91*<br />
SBP (mm Hg) 118 ± 11 151 ± 15* 123 ± 9 154 ± 17* 118.6 ± 11.8 148.9 ± 13.1*<br />
DBP (mm Hg) 73 ± 9 96 ± 12* 76 ± 6 95 ± 3* 78.1 ± 7.1 97.9 ± 10.2*<br />
BMI indicate body mass index; SBP, systolic blood pressure; DBP diastolic blood pressure; yrs years. Continuous variables are given as mean ± SD,<br />
*P
16328 Afr. J. Biotechnol.<br />
Table 3. Association between rs12045862 variants and EH.<br />
n (%) n (%) n (%)<br />
Adjusted ORs (95% CI)<br />
Mm +mm vs MM<br />
Control<br />
EH<br />
349<br />
368<br />
0.403<br />
0.409<br />
0.860 130<br />
130<br />
157<br />
175<br />
62<br />
63<br />
0.786<br />
1.0 (ref)<br />
0.414 to 0.432<br />
SNP Ethnicity Population N MAF Pallelic MM Mm mm Pdominant<br />
rs12045862<br />
Han<br />
Uygur<br />
Kazak<br />
Control 300 0.453 0.995 90 148 62<br />
1.0 (ref)<br />
0.879<br />
EH 309 0.455 89 159 61 0.484 to 0.503<br />
Control 275 0.480 0.880 70 146 59<br />
1.0 (ref)<br />
0.960<br />
EH 264 0.473 68 142 54 0.421 to 0.441<br />
SNP, Single nucleotide polymorphism; N, number of subject; MAF, minor allele frequency; Pallele, value of allele was determined by a two-sided 2<br />
test. EH essential hypertension; ref, reference; M: major allele, m: minor allele. Pdominant value and adjusted odds ratio (95% confidence interval)<br />
were computed with multivariate logistic regression analysis by adjusting for gender, age and body mass index.<br />
Table 4. Association between rs7539542 variants and EH.<br />
n (%) n (%) n (%)<br />
Adjusted ORs (95% CI)<br />
Mm + mm vs MM<br />
Control<br />
EH<br />
349<br />
368<br />
0.371<br />
0.378<br />
0.654 137<br />
152<br />
165<br />
156<br />
47<br />
61<br />
0.318<br />
1.0 (ref)<br />
0.318 to 0.336<br />
SNP Ethnicity Population N MAF Pallelic MM Mm mm Pdominant<br />
rs7539542<br />
Han<br />
Uygur<br />
Kazak<br />
Control 300 0.435 0.804 95 149 56<br />
1.0 (ref)<br />
0.230<br />
EH 309 0.382 116 142 47 0.222 to 0.238<br />
Control 275 0.418 0.830 89 142 44<br />
1.0 (ref)<br />
0.969<br />
EH 264 0.411 88 135 41 0.970 to 0.976<br />
SNP, Single nucleotide polymorphism; N, number of subject; MAF, minor allele frequency; Pallele, value of allele was determined by a two-sided<br />
2 test. EH essential hypertension; ref, reference; M: major allele, m: minor allele. Pdominant value and adjusted odds ratio (95% confidence<br />
interval) were computed with multivariate logistic regression analysis by adjusting for gender, age and body mass index.<br />
variety of genetic and environmental factors lead to high<br />
blood pressure, and the genes involved in blood pressure<br />
regulation have ethnic and regional specificity. Kazak and<br />
Uygur characteristics of the incidence of hypertension are<br />
not the same. Kazakh is one of the five highest incidences<br />
of hypertension ethnic groups, with hypertension pre-<br />
valence rate of 17.36%, while the prevalence rate of<br />
Uygur was only 10.33%, which is lower than the average<br />
level in national prevalence rate of hypertension in all<br />
ethnic groups. In Kazak, hypertension not only has high<br />
incidence but also the early onset, the increase degree of<br />
blood pressure was severe, and familial aggregation is<br />
also higher than the Uighur. Meanwhile the life<br />
environmental factors of the two national groups are very<br />
different, such as the Kazak are herdsmen but Uyghur are<br />
farmers; Kazaks live in the Tianshan mountains with the<br />
colder climate of residence, but Uighur live far away <strong>from</strong><br />
the oasis of Tianshan mountains and hence the climate is<br />
relatively hot; the meat and salt intake in Kazakh were<br />
higher than in Uygur, while the intake of fruits and<br />
vegetables less than the Uighur. The differences of<br />
incidence characteristics of two ethnic in hypertension<br />
suggests that hypertension of the two nations may exist in<br />
different pathogenic mechanisms.<br />
In this study, Xinjiang Uygur, Kazak and Han popu-<br />
lations had as research subjects, 309 cases of patients<br />
with essential hypertension in Xinjiang Uygur, 264 cases<br />
of patients with essential hypertension in Kazak and 368<br />
cases of patients with essential hypertension in Han,<br />
while the control group selected 300 cases of normal<br />
Uygur, 275 cases of normal Kazak and 349 cases of<br />
normal Han. The TaqMan probe was used to test the<br />
gene polymorphism in two allele’s rs12045862T/C and<br />
rs7539542G/C of adiponectin receptor1 and adiponectin<br />
receptor2. Our results show that the gene polymorphism<br />
of adiponectin receptor gene rs12045862T/C in essential<br />
hypertension group of Xinjiang Uygur, Kazak and Han<br />
had no significant difference compared with the control<br />
group. The gene polymorphism of adiponectin receptor<br />
gene rs7539542G/C in essential hypertension group of
Xinjiang Uygur, Kazak and Han had no significant<br />
difference compared with the control group. This<br />
conclusion is consistent in the three ethnic groups. This<br />
may be because adiponectin receptors had correlation<br />
with essential hypertension only indirectly through insulin<br />
resistance, or polymorphisms sites selected in this study<br />
did not significantly affect the gene function of adiponectin<br />
receptor, and also, the selected single SNP site for<br />
correlation analysis may not be very good coverage of all<br />
the variations of the gene. On the other hand, each of<br />
hypertension-related genes may have small role in the<br />
pathogenesis of hypertension, since different<br />
hypertension-related genes may combine to significantly<br />
increase blood pressure.<br />
Therefore, many variations of hypertension candidate<br />
genes and their interaction are the current research<br />
strategy. In subsequent studies, we still need to increase<br />
the sample size, select prospective study design and<br />
choose more polymorphisms covering the entire gene<br />
region of study. In summary, hypertension is a polygenic<br />
and multifactorial genetic disease, and the issues on<br />
many related genes in the major and minor genes, as well<br />
as the complexity of the interactions between genes and<br />
the environment, need to be further explored.<br />
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Niebauer J, Schön MR, Williams CJ, Mantzoros CS (2006).<br />
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human skeletal muscle: associations with metabolic parameters and<br />
insulin resistance and regulation by physical training. J. Clin.<br />
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Civitarese AE, Jenkinson CP, Richardson D, Bajaj M, Cusi K, Kashyap S,<br />
Berria R, Belfort R, DeFronzo RA, Mandarino LJ, Ravussin E (2004).<br />
Adiponectin receptors gene expression and insulin sensitivity in<br />
non-diabetic Mexican American with or without a family history of<br />
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Fasshauer M, Paschke R, Stumvoll M (2004). Adiponectin, obesity, and<br />
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JM, Jinagouda S, Darwin CH, Mitchell BD, Bergman RN, Sutton B,<br />
Chen YD, Wagenknecht LE, Bowden DW, Rotter JI (2006).<br />
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Y, Motone M, Yamamoto K, Matsuo A, Ohashi K, Kihara S, Funahashi<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16330-16336, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2071<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Mechanism of action of pefloxacin on surface<br />
morphology, DNA gyrase activity and dehydrogenase<br />
enzymes of Klebsiella aerogenes<br />
Neeta N. Surve and Uttamkumar S. Bagde<br />
Department of Life Sciences, Applied Microbiology Laboratory, University of Mumbai, Vidyanagari, Santacruz (E),<br />
Mumbai 400098, <strong>India</strong>.<br />
Accepted 30 September, 2011<br />
The aim of the present study was to investigate susceptibility of Klebsiella aerogenes towards<br />
pefloxacin. The MIC determined by broth dilution method and Hi-Comb method was 0.1 µg/ml.<br />
Morphological alterations on the cell surface of the K. aerogenes was shown by scanning electron<br />
microscopy (SEM) after the treatment with pefloxacin. It was observed that the site of pefloxacin action<br />
was intracellular and it caused surface alterations. The present investigation also showed the effect of<br />
Quinolone pefloxacin on DNA gyrase activity of K. aerogenes. DNA gyrase was purified by affinity<br />
chromatography and inhibition of pefloxacin on supercoiling activity of DNA gyrase was studied.<br />
Emphasis was also given on the inhibition effect of pefloxacin on dehydrogenase activity of K.<br />
aerogenes.<br />
Key words: Pefloxacin, Klebsiella aerogenes, scanning electron microscopy (SEM), deoxyribonucleic acid<br />
(DNA) gyrase, dehydrogenases, Hi-Comb method, minimum inhibitory concentration (MIC).<br />
INTRODUCTION<br />
Klebsiella spp. is opportunistic pathogen, which primarily<br />
attack immunocompromised individuals who are<br />
hospitalized and suffer <strong>from</strong> severe underlying diseases<br />
such as diabetes mellitus or chronic pulmonary obstruction.<br />
Klebsiella accounts for 6 to 17% of all nosocomial<br />
urinary tract infections (UTI) and shows an even higher<br />
incidence in specific groups of patients at risk, for<br />
example, patients with neuropathic bladders or with<br />
diabetes mellitus (Bennett et al., 1995; Lye et al., 1992).<br />
Since nalidixic acid and its first analogs, pipemidic acid<br />
and oxolinic acid, were found to have good activity<br />
against Gram-negative bacteria involved in UTI, the<br />
quinolone class has been intensively studied and many<br />
new active products have been synthesized (Albrecht,<br />
1977; Domagala et al., 1986). They are characterized by<br />
*Corresponding author. E-mail: bagdeu@yahoo.com. Tel:<br />
9821681672.<br />
Abbreviations: SEM, Scanning electron microscope; UTI,<br />
urinary tract infections; MIC, minimum inhibitory concentration.<br />
broad spectrum activity with oral efficacy. These agents<br />
have been shown to be specific inhibitors of the A subunit<br />
of the bacterial topoisomerase deoxyribonucleic acid<br />
(DNA) gyrase, the Gyr B protein being inhibited by<br />
coumermycin A1 and novobiocin (Gellert et al., 1976;<br />
Hooper et al., 1982).<br />
DNA gyrase are topoisomerases catalyze the supercoiling<br />
of relaxed closed circular DNA coupled to the<br />
hydrolysis of Adenosine triphosphate, ATP (Wang and<br />
Liu, 1979). Quinolone antimicrobial agents form a<br />
complex with gyrase and DNA that blocks replication fork<br />
movement (Drlica, 1984; Drlica et al., 1980). To understand<br />
in vivo mechanism of pefloxacin, we examined the<br />
contribution of enzyme inhibition to drug action against K.<br />
aerogenes.<br />
In this report, sensitivity of Klebsiella aerogenes against<br />
quinolone pefloxacin was studied by broth dilution<br />
method and Hi-Comb method (Hi-media) and MIC was<br />
determined. Morphological alterations on the cell surface<br />
of K. aerogenes were studied after treatment with<br />
pefloxacin by scanning electron microscope (SEM).<br />
Emphasis was also given on inhibition of dehydro-<br />
genases enzymes of organism by the antibiotic.
MATERIALS AND METHODS<br />
Bacterial strain, culture media and drug<br />
K. aerogenes NCIM 2239 was obtained <strong>from</strong> the National Collection<br />
of Industrial Microorganisms (NCIM), Pune, <strong>India</strong>. Bacterial strain<br />
was grown at 37°C in nutrient broth medium (Hi-media, <strong>India</strong>) and<br />
maintained at 5°C. Culture medium was autoclaved at 121°C for 20<br />
min, and the organism was subcultured in nutrient broth and<br />
nutrient agar plates and after 24 h incubation used as an inoculum.<br />
Drug pefloxacin was obtained <strong>from</strong> Sigma chemicals (U.S.A.) in the<br />
form of pefloxacin mesylate dihydrate.<br />
Determination of minimum inhibitory concentration (MIC)<br />
Sensitivity of pefloxacin against K. aerogenes was studied by<br />
determining Minimum inhibitory concentration (MIC) by broth<br />
dilution method and by Hi-Comb method (Hi-media, <strong>India</strong>). In Broth<br />
dilution method, different concentrations of antibacterial agents<br />
were prepared. Inoculums were adjusted to 0.5 Macfarland turbidity<br />
standards and an aliquot of 0.1 ml of inoculums was added to each<br />
tube of dilution. The tubes were incubated at 37°C overnight. MIC<br />
was read visually following 24 h of incubation and was defined as<br />
the lowest concentration that produced no visible turbidity (NCCLS,<br />
2001).<br />
In Hi-Comb method, at least 4 to 5 well isolated colonies of same<br />
morphological type <strong>from</strong> agar plate were touched with a wire loop<br />
and growth was transferred to tube containing 5 ml of broth.<br />
Turbidity was compared with 0.5 Macfarland standards and<br />
adjusted with sterile saline or broth if required. Organism was<br />
spread on agar plates by spread plate method and Hi-Comb strip<br />
was placed on medium in sterile condition. Plate was incubated for<br />
24 h at 37°C and zone of inhibition was observed. According to Hi-<br />
Comb MIC test, MIC value is the value at which the zone converges<br />
on the comb-like projections of the strips and not at the handle and<br />
zone of inhibition below the lowest concentration is to be<br />
considered (CLSI, 2008).<br />
Effect of pefloxacin on morphology of K. aerogenes<br />
Surface morphology was studied by SEM on Quanta 200 ESEM<br />
system (Icon Analytical Equipment Pvt. Ltd., <strong>India</strong>), after<br />
determining the MIC. Specified concentration of Pefloxacin (0.1<br />
µg/ml) was added to culture in the logarithmic phase of growth (12<br />
h culture) at 37°C. After different incubation time period 3, 6 and 24<br />
h with pefloxacin, SEM was performed. Treated and untreated cells<br />
after incubation were washed by centrifugation in 0.9% NaCl and<br />
fixed in 2% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.2) and<br />
images were taken by SEM (Klainer and Perkins, 1974).<br />
Effect of pefloxacin on dehydrogenases activity<br />
According to the procedure followed by Guha and Mookerjee<br />
(1978), the effect of pefloxacin on inhibition of dehydrogenase<br />
enzymes activity of K. aerogenes was studied. Cells grown for 48 h<br />
at 37°C were used as samples. According to the procedure,<br />
chloramphenicol was added to disrupt cell wall and MIC<br />
concentration of pefloxacin was added. 0.005 M substrates of TCA<br />
cycle, α-Ketoglutaric acid, succinic acid, isocitric acid and glutamic<br />
acid was added to each tube. 0.5 M Potassium phosphate buffer at<br />
pH 7.0, 0.3M MgCl2 and Triphenyl Tetrazolium Chloride solutions (9<br />
mg/ml) were finally added and OD values of the control tubes were<br />
measured and percentage inhibition of the activity of enzymes was<br />
calculated.<br />
Surve and Bagde 16331<br />
Effect of pefloxacin on DNA gyrase of K. aerogenes<br />
DNA gyrase was purified <strong>from</strong> K. aerogenes by affinity chromatography<br />
(Tabary et al., 1987; Bjornsti and Osheroff, 1999). The<br />
work was carried out at National Institute of Research in<br />
Reproductive Health, Mumbai, <strong>India</strong>. K. aerogenes (40 g) was<br />
suspended in 40 ml of 100 mM Tris hydrochloride (pH 7.6) -20%<br />
sucrose. Dithiothreitol, EDTA, phenylmethylsulfonylfluoride were<br />
added to 2, 20 and 1 mM, respectively. 16 mg of lysozyme was<br />
added after 10 min in ice, and the mixture was frozen at -80°C after<br />
an additional 10 min, and thawed at 20°C; Brij 58, MgCl2 and KCl<br />
were then added to 0.1%, 5 mM and 750 mM respectively. The<br />
lysate was mixed by several inversions and centrifuged at 100,000<br />
× g for 3 h. Dialysis of supernatant was done against buffer A (20<br />
mM KCl, 5 mM MgCl2, 1 mM EDTA, 20 mM Tris hydrochloride, 10<br />
% glycerol [pH 7.8]). It was then loaded onto a 2 ml novobiocin-<br />
Sepharose column and washed with buffer A until the optical<br />
density at 280 nm was minimal, with 25 ml of 20 mM ATP in buffer<br />
A and finally with buffer A until there was no more A280. Elution of<br />
DNA gyrase was done with 5 M urea in buffer A. Fractions were<br />
dialyzed against buffer A without MgCl2 and glycerol, concentrated<br />
with polyethylene glycol 20,000, dialyzed against buffer A without<br />
MgCl2 but with 50% glycerol and stored at -20°C. Protein<br />
concentrations were estimated to be 400µg/ml by Folin Lowry<br />
method. The purity was checked by sodium dodecyl sulfate<br />
polyacrylamide gel electrophoresis and the specific activity was 2 ×<br />
10 4 U/mg of protein.<br />
Relaxed pBR322 DNA (Topogen Inc., USA) and 1 U of gyrase<br />
were incubated in an 18 µl reaction mixture containing 25 mM KCl,<br />
20 mM N-2-hydroxyethylpiperazine-N 1 -2-ethanesulfonic acid<br />
(HEPES), 4 mM dithiothreitol, 1.7 mM spermidine, 1.7 mM ATP, 6<br />
mM magnesium acetate, 0.5 mM EDTA, 3% ethylene glycol and 2<br />
mM Tris hydrochloride (pH 8). Under these conditions DNA is totally<br />
supercoiled in 30 min at 37°C. The mixture was incubated for 30<br />
min at 37°C and the reaction was stopped at 0°C by the addition of<br />
1µl of 1% sodium dodecyl sulfate and 2 µl of 0.4% bromophenol<br />
blue in 60% sucrose. The extent of supercoiling were determined<br />
by 1% agarose gel electrophoresis.<br />
1% agarose gel was made in EDTA (36 mM), Tris hydrochloride<br />
(pH 7.5) by <strong>using</strong> agarose. Samples applied to the gel and resolved<br />
at 70 V for 3 h. The gel was stained with ethidium bromide at room<br />
temperature and photographed under UV.<br />
RESULT<br />
MIC of K. aerogenes against pefloxacin determined by<br />
broth dilution method and Hi-Comb method was found to<br />
be 0.1 µg/ml. According to broth dilution method,<br />
inhibition in the growth was read visually and by Hi-Comb<br />
method, zone of inhibition was seen after 24 h incubation<br />
(Figure 1).<br />
In the present report, morphological changes induced<br />
by pefloxacin on K. aerogenes are shown in Figures 2<br />
and 3. Figure 2 shows images of control organism which<br />
were seen to be rod shaped bacilli. In Figure 3, changes<br />
on surface of cells were seen after different time interval<br />
of pefloxacin treatment; Figure 3a shows elongation and<br />
spheroplast formation after 3 h incubation time period;<br />
Figure 3b also shows elongation and spheroplast<br />
formation after 6 h incubation time period; Figure 3c<br />
shows pieces of bursted cells along with elongated and<br />
spheroplast cells.<br />
Cells of K. aerogenes were exposed to pefloxacin and
16332 Afr. J. Biotechnol.<br />
Figure 1. Determination of the MIC of Pefloxacin against K. aerogenes <strong>using</strong> Hi-Comb method. The clear<br />
area indicated the growth inhibition zone of the bacterium.<br />
Figure 2. K. aerogenes under the untreated condition is a rod-shaped bacilli.
Surve and Bagde 16333
16334 Afr. J. Biotechnol.<br />
Figure 3. K. aerogenes following treatment with Pefloxacin (0.1 µg/ml) at different incubation time period, a. exposed for 3 h, b.<br />
exposed for 6 h, c. exposed for 24 h.<br />
inhibition on the activity of dehydrogenases enzymes was<br />
studied. Inhibition percentage of dehydrogenases activity<br />
was glutamic 45%, succinic 48%, α-ketoglutaric 47% and<br />
isocitric dehydrogenases 45% (Table 1). Percentage<br />
inhibition of the activity of enzymes was calculated by<br />
comparing the O. D. values of the control tubes and the<br />
tubes containing pefloxacin.<br />
DNA gyrase was eluted by affinity chromatography and<br />
purity was checked by SDS PAGE. SDS-PAGE analysis<br />
revealed one band which corresponds to 100 kDa (Figure<br />
4). Finally, DNA supercoiling by DNA gyrase was studied<br />
in the presence and absence of pefloxacin (Figure 5).<br />
Lane a and c corresponds to the standards of Relaxed<br />
and supercoiled pBR322 DNA, respectively. Lane b<br />
corresponds to test containing pefloxacin, DNA gyrase<br />
and relaxed pBR322 DNA. According to the figure,<br />
pefloxacin inhibited DNA gyrase and relaxed DNA was<br />
not supercoiled. Lane d shows supercoiling activity of<br />
DNA gyrase in absence of Pefloxacin.<br />
DISCUSSION<br />
There has been a recent dramatic increase in information<br />
about the fluoroquinolones, a new class of potent orally<br />
absorbed antimicrobial agents. The first analog of this<br />
class of synthetic agents used clinically was nalidixic<br />
acid, a nonfluorinated agent which was released for<br />
treatment of urinary tract infections in 1962. In past<br />
decade, new fluoroquinolones, also called quinolones, 4quinolones,<br />
carboxyquinolones, or quinolone carboxylic<br />
acids, have been developed that include norfloxacin,<br />
ciprofloxacin, ofloxacin, pefloxacin, enoxacin and others.<br />
The principal bacterial target of the quinolones is<br />
deoxyribonucleic acid (DNA) gyrase (Crumplin et al.,<br />
1984; Gellert et al., 1977; Hooper et al., 1987; Sugino et<br />
al.,1977), an essential bacterial enzyme (Drlica, 1984;<br />
Cozzarelli, 1980; Gellert, 1981). This enzyme is a<br />
member of the class of type II topoisomerases and is<br />
composed of two A subunits encoded by the gyr A gene
Figure 4. SDS-PAGE analysis of purified K. aerogenes DNA<br />
gyrase. Lanes a and b: Protein eluted before affinity<br />
chromatography of K. aerogenes. Lanes c and d: Protein eluted<br />
after affinity chromatography of K. aerogenes showing DNA<br />
gyrase (100kDa).<br />
Figure 5. Agarose gel electrophoresis of relaxed pBR322<br />
DNA, DNA gyrase and pefloxacin, showing supercoiling<br />
activity. Lane a: Control of Relaxed pBR322 DNA; lane b:<br />
Showing effect of pefloxacin on DNA gyrase inhibiting<br />
supercoiling activity; lane c: Control of Supercoiled pBR322<br />
DNA; lane d: DNA gyrase supercoiling activity without<br />
pefloxacin.<br />
Surve and Bagde 16335<br />
and two B subunits encoded by the gyr B gene. DNA<br />
gyrase has been most extensively studied in Escherichia<br />
Coli, but DNA gyrases have also been purified <strong>from</strong><br />
Micrococcus luteus (Klevan and Wang, 1980; Liu and<br />
Wang, 1978), Bacillus subtilis (Orr and Staudenbauer,<br />
1982; Sugino and Bott, 1980), and Pseudomonas<br />
aeruginosa (Inoue et al., 1987; Miller and Scurlock,<br />
1983).<br />
Tabary et al. (1987) studied the effects of DNA gyrase<br />
inhibitors pefloxacin and five other quinolones on E. coli<br />
Topoisomerase I and Pan and Fisher (1999) studied the<br />
effects of fluoroquinolones on Streptococcus pneumoniae<br />
DNA gyrase and Topoisomerase IV. Pan et al. (2009)<br />
studied the effects of quinolones and Quinazolinedione<br />
PD 0305970 on DNA gyrase and Topoisomerase IV of<br />
Gram positive pathogens, including quinolone resistant<br />
isolates. Schultz et al. (1996) studied the structure and<br />
conformational changes of DNA topoisomerase II by<br />
electron microscopy.<br />
DNA gyrase catalyze the supercoiling activity of<br />
covalently closed circular DNA relaxed by topoisomerase<br />
I. Quinolones inhibit this activity at concentrations near<br />
MICs. In the present investigation, the same effect was<br />
studied on K. aerogenes by pefloxacin with the reference<br />
to the prior research done. DNA gyrase was purified by<br />
Sepharose-novobiocin affinity chromatography and the<br />
effect of pefloxacin was studied. Pefloxacin inhibited the<br />
DNA gyrase activity by inhibiting supercoiling of relaxed<br />
DNA.<br />
SEM data presented here are in substantial agreement<br />
with the previous reports of surface disruption of antibiotic<br />
treated with E. coli (Klainer and Perkins, 1972, 1974).<br />
The present study demonstrates that antimicrobial agent<br />
whose site of action is thought to be intracellular may<br />
cause morphological alterations which are similar to<br />
those induced by cell-wall active drugs. Surve and Bagde<br />
(2010b) studied the effects of methicillin on cell surface of<br />
Streptococcus agalactiae by SEM and reported similar<br />
results.<br />
The effect of pefloxacin was also studied on the activity<br />
of dehydrogenases enzymes activity of K. aerogenes.<br />
Inhibition of four dehydrogenases involved in the TCA<br />
cycle, glutamic, succinic, α-ketoglutaric and isocitric<br />
dehydrogenases was found when bacterial cells were<br />
exposed to pefloxacin. Due to this, the supply of energy rich<br />
compounds like ATP got considerably reduced, and<br />
thereby the synthesis of macromolecules like protein,<br />
DNA and RNA declined and subsequently the growth got<br />
ceased. Surve and Bagde (2009, 2010a, b) reported<br />
similar inhibition effects of silver, arsenic and methicillin<br />
On dehydrogenases activity of pathogenic microorganisms.<br />
Acknowledgement<br />
Deep sense of gratitude to Dr. Bandivadekar, Department<br />
of Biochemistry, National Institute of Research in
16336 Afr. J. Biotechnol.<br />
Reproductive Health, Mumbai, <strong>India</strong>, and his staff for<br />
support in the experiment.<br />
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Bjornsti MA, Osheroff N (1999). DNA Topoisomerase Protocols. In<br />
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Domagala JM, Hanna LD, Heifetz CL, Hutt MP, Mich TF, Sanchez JP,<br />
Solomon M (1986). New structure-activity relationships of the<br />
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Drlica K (1984). Biology of bacterial deoxyribonucleic acid<br />
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Drlica K, Engle EC, Manes SH (1980). DNA gyrase on the bacterial<br />
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Gellert M (1981). DNA topoisomerases. Annu. Rev. Biochem. 50: 879-<br />
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Gellert M, Mizuuchi K, O’Dea MH, Itoh T, Tomizawa JI (1977). Nalidixic<br />
acid resistance: a second genetic character involved in DNA gyrase<br />
activity. Proc. Natl. Acad. Sci. USA. 74: 4772-4776.<br />
Gellert M, O’Dea MH, Itoh T, Tomizawa JI (1976). Novobiocin and<br />
coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase.<br />
Proc. Natl. Acad. Sci. USA, 73: 4474-4478.<br />
Guha C, Mookerjee A (1978). Effect of Nickel on macromolecular<br />
synthesis in Escherichia coli K12. The Nucleus, 22(1): 45-47.<br />
Hooper DC, Wolfson JS, McHugh GL, Winters MB, Swartz MN (1982).<br />
Effects of novobiocin, coumerymycin A1, clorobiocin and their<br />
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Antimicrob. Agents. Chemother. 22: 662-671.<br />
Hooper DC, Wolfson JS, Ng EY, Swartz MN (1987). Mechanisms of<br />
action and resistance to ciprofloxacin. Am. J. Med. 82(Suppl 4A): 12-<br />
20.<br />
Inoue Y, Sato K, Fujii T, Hirai K, Inoue M, Iyobe S, Mitsuhashi S (1987).<br />
Some properties of subunits of DNA gyrase <strong>from</strong> Pseudomonas<br />
aeruginosa PAQ1 and its nalidixic acid-resistant mutant. J. Bacteriol.<br />
169: 2322-2325.<br />
Klainer AS, Perkins RL (1972). Surface Manifestations of Antibiotic-<br />
Induced alterations in protein synthesis in bacterial cells. Antimicrob.<br />
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Klainer AS, Perkins RL (1974). Effect of the inhibition of protein<br />
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Chemother. 6(2): 216-224.<br />
Klevan L, Wang JC (1980). Deoxyribonucleic acid gyrasedeoxyribonucleic<br />
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5234.<br />
Liu LF, Wang JC (1978). Micrococcus luteus DNA gyrase: active<br />
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Lye WC, Chan RKT, Lee EJC, Kumarasinghe G (1992). Urinary tract<br />
infections in patients with diabetes mellitus. J. Infect. 24: 169-174.<br />
Miller RV, Scurlock TR (1983). DNA gyrase (topoisomerase II) <strong>from</strong><br />
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694-700.<br />
NCCLS. National Committee for Clinical Laboratory Standards (2001).<br />
Methods for dilution antimicrobial susceptibility tests for bacteria that<br />
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Clinical Laboratory Standards, Wayne, Pa. vol. 20.<br />
Orr E, Staudenbauer WL (1982). Bacillus subtilis DNA gyrase:<br />
purification of subunits and reconstitution of supercoiling activity. J.<br />
Bacteriol. 151: 524-527.<br />
Pan XS, Fisher LM (1999). Streptococcus pneumoniae DNA gyrase and<br />
Topoisomerase IV: overexpression, purification and differential<br />
inhibition by fluoroquinolones. Antimicrob. Agents Chemother. 43(5):<br />
1129-1136.<br />
Pan XS, Gould KA, Fisher LM (2009). Probing the differential<br />
interactions of quinazolinedione PD 0305970 and quinolones with<br />
gyrase and topoisomerase IV. Antimicrob. Agents Chemother. 53(9):<br />
3822-3831.<br />
Schultz P, Olland S, Oudet P, Hancock R (1996). Structure and<br />
conformational changes of DNA topoisomerase II visualized by<br />
electron microscopy. Proc. Natl. Acad. Sci. USA. 93: 5936-5940.<br />
Sugino A, Bott KF (1980). Bacillus subtilis deoxyribonucleic acid gyrase.<br />
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Sugino A, Peebles CL, Krreuzer KN, Cozzarelli NR (1977). Mechanism<br />
of action of nalidixic acid: purification of Escherichia coli nalA gene<br />
product and its relationship to DNA gyrase and a novel nickingclosing<br />
enzyme. Proc. Natl. Acad. Sci. USA. 74: 4767-4771.<br />
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Staphylococcus epidermidis and Klebsiella pneumoniae. Int. J.<br />
Integrative Biol. 7(3): 139-144.<br />
Surve NN, Bagde US (2010a). Arsenic toxicity in pathogenic<br />
Staphylococcus epidermidis and Klebsiella pneumoniae. Int. J. Biol.<br />
2(2): 213-221.<br />
Surve NN, Bagde US (2010b). Morphological alterations by methicillin<br />
on cell wall of Streptococcus agalactiae. Int. J. Integrative Biol. 11(1):<br />
26-29.<br />
Tabary X, Moreau N, Dureuil C, Le Goffic F (1987). Effect of DNA<br />
gyrase inhibitors pefloxacin, five other quinolones, Novobiocin and<br />
chlorobiocin on Escherichia coli Topoisomerase I. Antimicrob. Agents<br />
Chemother. 31(12): 1925-1928.<br />
Wang JC, Liu LF (1979). DNA topoisomerases: enzymes that catalyze<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16337-16341, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2239<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Cytotoxic constituents of Clausena excavata<br />
N. W. Muhd Sharif, N. A. Mustahil, H. S. Mohd Noor, M. A. Sukari*, M. Rahmani, Y. H. Taufiq-<br />
Yap and G. C. L. Ee<br />
Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor Darul Ehsan,<br />
Malaysia.<br />
Accepted 7 October, 2011<br />
Phytochemical investigation on leaves, stem bark and roots of Malaysian Clausena excavata has led to<br />
the isolation and identification of limonoid compounds, clausenolide-1-methyl ether (1) and clausenarin<br />
(2), carbazole alkaloids, 3-formyl-2,7-dimethoxycarbazole (3) and clausine-K (4) together with<br />
coumarins, xanthyletin (5), dentatin (6) and nordentatin (7). Extracts of roots and isolated compounds<br />
(1), (2), (5) and (6) were subjected to cytotoxic screening against various cancer cell lines (HL-60, MCF-<br />
7, HeLa and HT-29). All roots extracts except methanol showed strong activity against HL-60 and MCF-7<br />
cancer cell lines with IC50 values ranging <strong>from</strong> 4 to 6 µg/ml. Dentatin (6) was found to be the most<br />
cytotoxic constituent against all cancer cell lines with IC50 values ranging <strong>from</strong> 5 to 10 µg/ml.<br />
Key words: Clausena excavata, carbazole alkaloids, limonoids, coumarins, cytotoxic.<br />
INTRODUCTION<br />
The Rutaceae family is one of the largest plant family<br />
with approximately 150 genera and 1,500 species<br />
(Jones, 1995), distributed largely in tropical and<br />
subtropical parts of the world. The Rutaceae family is<br />
known throughout the world for its citrus fruits such as<br />
oranges, lemons and grape fruit (Sharma, 1993).<br />
Essential oils obtained <strong>from</strong> the leaves and fruit peel of<br />
various species of Rutaceae family especially <strong>from</strong> the<br />
genus Clausena, Citrus and Murraya are popularly used<br />
in medicine and perfumery. Clausena excavata Burm.F.<br />
locally known as “Pokok Kemantu” (ghostly tree) or<br />
“Pokok Cemamar” (diarrhea tree) is one of Malaysian<br />
species of “ulam” with high anti-oxidant properties. The<br />
plant has been claimed to be a useful folk medicine in the<br />
treatment of various diseases such as cough, rhinitis,<br />
fever and stomach disorder.<br />
This plant has been reported to possess various<br />
biological activities such as anti-inflammatory, antiplatelet,<br />
antiplasmodic, antimicrobial, antinociceptive and<br />
anti-immunomodulatory (Wu et al., 1994). Previous<br />
phytochemical investigations have reported isolation of<br />
some carbazole alkaloids, coumarins and limonoids (Su<br />
et al., 2009; Taufiq et al., 2007; Ito et al., 1997; Wu et al.,<br />
1997). In more recent study, several natural and<br />
*Corresponding author. E-mail: aspollah@science.upm.edu.my.<br />
synthesized analogues of pyranocoumarins obtained<br />
<strong>from</strong> this plant were found to be potent against hepatitis B<br />
virus and showed significant cytotoxicity against a panel<br />
of cancer cell lines (Su et al., 2009). In this paper, we<br />
reported the isolation and characterization of alkaloids,<br />
coumarins and limonoids <strong>from</strong> the plant, and the cytotoxic<br />
activity of the plant extracts and isolated compounds<br />
against different cancer cell lines (HL-60, MCF-7, HT-29<br />
and HeLa). The work reported here is the first on<br />
cytotoxic screening of roots extracts and isolated<br />
compounds, clausenolide-1-methyl ether (1) and<br />
clausenarin (2) <strong>from</strong> Malaysian C. excavata against<br />
various cancer cell lines.<br />
MATERIALS AND METHODS<br />
C. excavata Burm.F. was collected <strong>from</strong> Pendang, Kedah in<br />
December 2006. The plant was identified by Mr. Shamsul Khamis<br />
<strong>from</strong> Institute of Bioscience, Universiti Putra Malaysia. A voucher<br />
specimen of this plant was deposited in the herbarium of the<br />
institute. The plant materials were separated into leaves, stem bark<br />
and roots, air-dried and ground prior to use.<br />
Extraction and isolation<br />
Different parts of C. excavata were extracted successively with<br />
hexane, chloroform and methanol at room temperature. The<br />
extracts were evaporated to dryness under reduced pressure <strong>using</strong>
16338 Afr. J. Biotechnol.<br />
rotary evaporator to give crude extracts. Air-dried and ground<br />
leaves (778 g) yielded hexane (8.7 g), chloroform (11.9 g) and<br />
methanol (15.8 g) extracts, respectively while stem bark (780 g)<br />
yielded hexane (3.5 g), chloroform (35.1 g) and methanol (25.2 g)<br />
extracts, respectively. Similar procedures on roots of the plant (686<br />
g) yielded hexane (12.6 g), chloroform (35.1 g), acetone (11.0 g)<br />
and methanol (50.0 g) extracts, respectively. Each of these extracts<br />
was subjected to column chromatography over silica gel <strong>using</strong> a<br />
stepwise gradient elution system (hexane/ethyl acetate and ethyl<br />
acetate/methanol). Column chromatography separation of hexane<br />
extract of the leaves (6.7 g) yielded stigmasterol (35 mg), while its<br />
chloroform extract (9.9 g) yielded 3-formyl-2,7-dimethoxycarbazole<br />
(3, 20 mg). Similar column separation of hexane extract of stem<br />
bark (2 g) yielded stigmasterol (10 mg) and β-sitosterol (15 mg),<br />
while the chloroform extract (33.1 g) yielded also β-sitosterol (15<br />
mg), together with clausenarin (2, 30 mg), clausenolide-1-methyl<br />
ether (1, 15 mg) and clausine-K (4, 20 mg). In addition, clausenarin<br />
(2, 35 mg) was also obtained <strong>from</strong> the methanol extract (23.2 g).<br />
Meanwhile, column chromatography fractionation of hexane extract<br />
of the roots of the plant (10.6 g) yielded coumarins xanthyletin (5,<br />
36 mg) and dentatin (6,100 mg), while the chloroform extract<br />
yielded also dentatin (6, 50 mg) together with nordentatin (7, 10<br />
mg).<br />
Clausenolide-1-methyl ether (1) was isolated as colourless<br />
powder, C26H34O8, HR-FAB-MS: [M+H] + m/z 475.2322. m.p. 235 to<br />
237°C (Wu et al., 1993, m.p. 190-191°C). IR (KBr disc, νmax, cm -1 ):<br />
3502, 1724, 1680, 1160, 922. EIMS: 474 ([M] + , 2), 443 (15), 459<br />
(3), 351 (64), 319 (66), 277 (70), 217 (44), 95 (100), 69 (84), 55<br />
(51). 1 H and 13 C NMR spectral data are in a good agreement with<br />
the published data (Wu et al., 1993).<br />
Clausenarin (2) was isolated as colourless needle-shaped crystal,<br />
C26H32O9, m.p. 292 to 294°C (Ngadjui et al., 1989, m.p. 293-294°C).<br />
IR (KBr disc, νmax, cm -1 ): 3483, 1719, 1638, 1162, 875. EIMS: 488<br />
([M] + , 10), 474 (5), 445 (3), 365 (100), 289 (8), 277 (27), 133 (35),<br />
107 (34), 95 (64). 1 H and 13 C NMR spectral data are in good<br />
agreement with the published data (Ngadjui et al., 1989).<br />
3-Formyl-2,7-dimethoxycarbazole (3) was isolated as greenish<br />
needle, C15H13NO3, m.p 217-219°C (Peh, 2001, m.p. 217 to 219°C).<br />
IR (KBr disc, νmax, cm -1 ): 3438, 2924, 1664, 1158. EIMS: 255 ([M] + ,<br />
100), 240 (43), 226 (6), 209 (20), 197 (11), 191 (3), 184 (17), 179<br />
(4), 169 (30), 161 (7), 153 (15), 147 (3), 141 (22). 1 H and 13 C NMR<br />
spectral data are in good agreement with the published data (Peh,<br />
2001).<br />
Clausine-K (4) was isolated as yellow needle-shaped crystal,<br />
C15H13NO4, m.p. 254 to 256°C (Wu et al., 1996, m.p. 250-256 ºC).<br />
IR (KBr disc, νmax, cm -1 ): 3412, 3317, 1665, 1163. EIMS: 271 ([M] + ,<br />
100), 256 (28), 240 (16), 212 (15), 196 (15). 1 H and 13 C NMR<br />
spectral data are in a good agreement with the published data (Wu<br />
et al., 1996).<br />
Xanthyletin (5) was isolated as colourless needle-shaped crystal,<br />
C14H12O3, m.p. 119 to 121°C (Wu et al., 1997, m.p. 120 to 121°C).<br />
IR (KBr disc, νmax, cm -1 ): 1722, 1622, 1562, 1160. EIMS: 228 ([M] + ,<br />
20), 213 (100), 185 (21), 128 (10), 115 (8), 91 (24), 51 (18). 1 H and<br />
13 C NMR spectral data are in good agreement with the published<br />
data (Wu et al., 1997).<br />
Dentatin (6) was isolated as colourless needle-shaped crystal,<br />
C20H22O4, m.p. 90 to 92°C (Xin et al., 2008, m.p. 91 to 92°C). IR<br />
(KBr disc, νmax, cm -1 ): 1681, 1592, 1460, 1168. EIMS: 326 ([M] + ,<br />
20), 311 (100), 281 (17), 269 (3), 253 (8), 241 (3), 227 (5), 213 (3).<br />
1 H and 13 C NMR spectral data are in good agreement with the<br />
published data (Xin et al., 2008).<br />
Nordentatin (7) was isolated as colourless needle-shaped crystal,<br />
C19H20O4, m.p. 183 to 186°C (Wu and Furukawa, 1982, m.p. 178 to<br />
180°C). IR (KBr disc, νmax, cm -1 ): 3311, 1681, 1593, 1184. EIMS:<br />
312 ([M] + , 45), 297 (100), 283 (3), 269 (15), 255 (10), 241 (30). 1 H<br />
and 13 C NMR spectral data are in good agreement with the<br />
published data (Wu and Furukawa, 1982).<br />
Cytotoxic assay<br />
The crude extracts and selected pure compounds including<br />
clausenolide-1-methyl ether (1), clausenarin (2), xanthyletin (5) and<br />
dentatin (6) were screened for cytotoxic activity against HL-60<br />
(human promyelocytic leukemia), MCF-7 (human breast cancer),<br />
HT-29 (human colon cancer) and HeLa (human cervical cancer)<br />
cancer cell lines. The assay was carried out according to the<br />
methods previously described (Sukari et al., 2010). The cytotoxic<br />
index used was IC50, which is the concentration that gave 50%<br />
inhibition of the cell as compared to the untreated control. Extracts<br />
and pure compounds which exhibits cytotoxic index IC50 less than<br />
10 μg/ml were considered to have significant cytotoxic activity<br />
(Mackeen et al., 1997).<br />
RESULTS AND DISCUSSION<br />
Extraction and isolation work on different parts of<br />
Malaysian C. excavata have led to the identification and<br />
characterization of limonoid compounds, carbazole<br />
alkaloids and coumarins. Clausenolide-1-methyl ether<br />
(1), clausenarin (2) and carbazole alkaloid, clausine-K (4)<br />
were obtained <strong>from</strong> chloroform extract of stem bark of C.<br />
excavata. Clausenarin (2) was also gotten <strong>from</strong><br />
fractionation of methanol extract of stem bark. Another<br />
carbazole alkaloid, 3-formyl-2,7-dimethoxycarbazole (3)<br />
was isolated <strong>from</strong> chloroform extract of the leaves.<br />
Besides, three coumarins identified as xanthyletin (5),<br />
dentatin (6) and nordentatin (7) were isolated <strong>from</strong><br />
hexane and chloroform extracts of the plant. Figure 1<br />
shows the chemical structures of isolated compounds<br />
<strong>from</strong> different parts and various extracts of Malaysian C.<br />
excavata. The structures of the compounds were<br />
elucidated <strong>using</strong> spectroscopic methods and comparison<br />
of their spectral and physical data with the literature<br />
values.<br />
Clausenolide 1-methyl ether (1) has been reported only<br />
once and this is the first isolation of the compound <strong>from</strong><br />
Malaysian species. The compound was obtained as<br />
colourless powder and the molecular formula was<br />
determined to be C26H34O8 by HR-FAB-MS at m/z<br />
475.2322 [M+H] + (calculated for C26H35O8 475.2332). The<br />
infrared spectrum showed a lactone carbonyl peak at<br />
1724 cm -1 and a ketone carbonyl at 1680 cm -1 , whereas<br />
low intensity peak at 922 cm -1 was due to β-substituted<br />
furan. Hydroxyl group displayed a strong absorption band<br />
at 3502 cm -1 . Its 1 H NMR spectrum was similar to<br />
clausenolide (Ngadjui et al., 1989), except the present of<br />
singlet at δ 3.23 due to methoxyl group attached to βsubstituted<br />
tetrahydrofuran ring. All the compounds (1) to<br />
(7) have been previously isolated <strong>from</strong> C. excavata<br />
collected <strong>from</strong> different Asian regions. However, out of
H 3CO<br />
H 3CO<br />
O<br />
HO<br />
O<br />
O<br />
(1)<br />
N<br />
H<br />
(3) R= CHO<br />
(4) R= COOH<br />
O<br />
O<br />
O<br />
R<br />
OCH 3<br />
OR<br />
O<br />
O O<br />
(6) R= CH3<br />
(7) R= H<br />
Figure 1. Structures of isolated compounds (1-7).<br />
seven constituents mentioned here, only clausenarin (2),<br />
3-formyl-2,7-dimethoxycarbazole (3) and clausine-K (4)<br />
has been isolated <strong>from</strong> another collection of Malaysian<br />
species reported by Peh (2001). In both cases, the plant<br />
materials were collected <strong>from</strong> different locations of Kedah<br />
in north Malaysia peninsula. Apparently, there are<br />
variations of chemical constituents obtained which might<br />
be due to different soil conditions.<br />
Extracts of roots together with isolated compounds,<br />
clausenolide-1-methyl ether (1), clausenarin (2),<br />
xanthyletin (5) and dentatin (6) were subjected to<br />
cytotoxic screening against various cancer cell lines (HL-<br />
60, MCF-7, HeLa and HT-29). The results are<br />
summarized in Table 1. Hexane, chloroform and acetone<br />
extracts exhibited strong activity against HL-60 and MCF-<br />
7 cancer cell lines with IC50 values ranging <strong>from</strong> 4 to 6<br />
μg/ml. The extracts also showed moderate to strong<br />
HO<br />
O<br />
HO<br />
O<br />
O<br />
O O O<br />
O<br />
(2)<br />
(5)<br />
O<br />
Muhd Sharif et al. 16339<br />
O<br />
effects against HT-29 and HeLa cancer cell lines, except<br />
non-active action of chloroform extract against HT-29<br />
cancer cell line.<br />
Dentatin (6) was the most cytotoxic compound against<br />
all cancer cell lines tested with IC50 values ranging <strong>from</strong> 5<br />
to 10 μg/ml as compared to coumarin and xanthyletin (5)<br />
which showed low to moderate activity against all cancer<br />
cell lines tested. However, limonoid compounds (1) and<br />
(2) showed insignificant cytotoxicity against all cancer cell<br />
lines tested with IC50 values more than 30 μg/ml, except<br />
for compound (1) which showed moderate activity against<br />
HL-60 and MCF-7 cancer cell lines. The cytotoxic activity<br />
of compounds (3), (4) and (7) were not carried out due to<br />
insufficient amount of the samples. Most of the crude<br />
extracts <strong>from</strong> roots part were more cytotoxic than the<br />
isolated compounds. These results suggest the<br />
synergistic effects shown by the isolated compounds<br />
O
16340 Afr. J. Biotechnol.<br />
Table 1. Cytotoxicity of roots extracts and compounds against various cancer cell lines.<br />
Plant part Extracts/pure compounds<br />
Roots<br />
Roots<br />
*IC50 (μg/ml) value<br />
HL-60 MCF-7 HT-29 HeLa<br />
Hexane 4.8±0.21 4.8±0.32 12.5±0.27 6.8±0.32<br />
Chloroform 5.8±0.12 5.5±0.21 >30 5.0±0.28<br />
Acetone 5.0±0.23 6.0±0.29 11.5±0.23 11.9±0.24<br />
Methanol 23.8±0.27 >30 >30 10.9±0.32<br />
Xanthyletin (5) 19.5±0.23 19.5±0.25 26.8±0.29 25.5±0.30<br />
Dentatin (6) 5.2±0.24 8.0±0.26 9.5±0.22 9.6±0.27<br />
Stem Clausenolide 1-methyl ether (1) 18.5±0.23 21.5±0.28 >30 >30<br />
Bark Clausenarin (2) >30 >30 >30 >30<br />
Standards<br />
Goniothalamin<br />
Tamoxifen<br />
5-Fluorouracil<br />
< 10 μg/ml = Strong activity, 10 to 20 μg/ml = moderate activity, 20 to 30 μg/ml= low activity.<br />
*Values are means ± standard deviation of triplicate analyses<br />
towards the cytotoxic properties of the crude extracts.<br />
Previous study on cytotoxic activity of Malaysian C.<br />
excavata have shown that the stem bark extract and<br />
isolated compound, 3-carbomethoxy-2-hydroxy-7methoxycarbazole<br />
(Clausine-TY) exhibit significant<br />
cytotoxicity against CEMss (human T4 lymphoblastoid)<br />
cancer cell line (Taufiq et al., 2007). On the other hand,<br />
the leaves extract of the plant was found to be not active.<br />
Xanthyletin (5) has been reported to show broad<br />
activity against a panel of cancer cell lines (Kawaii et al.,<br />
2001; Yong et al., 2001; Lie et al., 2003; Pettit et al.,<br />
2004; Anaya et al., 2005). Our results reveal that dentatin<br />
(6) showed strong activity against MCF-7 cancer cell line,<br />
while its analogue nordentatin (7) was reported to exhibit<br />
moderate activity against the same cancer cell (Su et al.,<br />
2009). The replacement of hydroxyl group with methoxyl<br />
group at C-5 position has increased the cytotoxicity of<br />
these analogues against MCF-7 cell lines. Another<br />
investigation by Kawaii et al. (2001) reported that dentatin<br />
(6) has been implicated as a promising chemopreventive<br />
agent against several cancer cell lines. However, the<br />
compound demonstrated insignificant cytotoxic activity<br />
against other cancer cell lines tested (Sunthitikawinsakul<br />
et al., 2003; Songsiang et al., 2011). The work reported<br />
here is the first on cytotoxic screening of roots extracts<br />
and isolated compounds, clausenolide-1-methyl ether (1)<br />
and clausenarin (2) <strong>from</strong> Malaysian C. excavata against<br />
different cancer cell lines mentioned earlier.<br />
ACKNOWLEDGEMENT<br />
We thank The Ministry of Science, Technology and<br />
Innovation (MOSTI) for the Fundamental Research Grant<br />
1.5±0.20 3.0±0.20 1.5±0.30 1.2±0.21<br />
Scheme and Graduate Research Fellowship (UPM) given<br />
to one of the authors (N. W. Muhd Sharif).<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16342-16346, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1000<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Antimicrobial activities of methanol and aqueous<br />
extracts of the stem of Bryophyllum pinnatum Kurz<br />
(Crassulaceae)<br />
Nwadinigwe, Alfreda Ogochukwu<br />
Department of Botany, University of Nigeria, Nsukka, Enugu State, Nigeria. E-mail: alfreda.nwadinigwe@unn.edu.ng,<br />
fredanwad@yahoo.com. Tel: +234(0)8036867051. Fax: 042-770705.<br />
Accepted 22 July, 2011<br />
The stem of Bryophyllum pinnatum (Crassulaceae), used in ethnomedicine for the treatment of various<br />
diseases, was screened for secondary metabolites and antimicrobial activity on Salmonella typhi,<br />
Pseudomonas aeruginosa, Staphylococcus aureus, Bacillus subtilis, Candida albicans and Aspergillus<br />
niger. Phytochemical analysis showed the presence of alkaloids, glycosides, proteins, carbohydrates,<br />
saponins, steroids, tannins and terpenoids in both the methanol and aqueous extracts. The<br />
antimicrobial activity result showed that the methanol extract significantly (P < 0.01) demonstrated<br />
antibacterial action against B. subtilis and S. aureus at 100, 50 and 25 mg/ml concentrations, <strong>using</strong> the<br />
agar diffusion technique. The aqueous extract also significantly (P < 0.01) showed antibacterial action<br />
against S. typhi and B. subtilis at the same concentrations. Both extracts did not demonstrate any<br />
antimicrobial activity against P. aeruginosa, C. albicans and A. niger. S. aureus showed the lowest<br />
minimum inhibitory concentration (MIC) of 6.29 mg/ml in the methanol extract, while S. typhi showed<br />
the highest MIC of 9.98 mg/ml in the aqueous extract (significant at P < 0.01). The results validate the<br />
use of B. pinnatum stem in ethnomedicine.<br />
Key words: Antimicrobial, Bryophyllum stem extracts.<br />
INTRODUCTION<br />
The search for the therapeutic use of natural products is<br />
on the increase and this may be caused by the resistance<br />
of micro-organisms to many orthodox antibiotics.<br />
Bryophyllum pinnatum Kurz [syn. Bryophyllum calycinum,<br />
Kalanchoe pinnata Pers, common names: African –<br />
never – die, resurrection plant, life plant (Anonymous,<br />
2005), miracle leaf, air plant (Wikipedia, 2009), Family<br />
Crassulaceae] is an erect, perennial, fleshy herb with a<br />
height of 60 to 120 cm. It is branched <strong>from</strong> the base, with<br />
opposite, simple or trifoliolate, petiolate leaves. The<br />
glabrous, thick, fleshy leaf is about 10 cm long and 5 to 6<br />
cm broad, obovate to obovate – orbicular, coarsely<br />
crenate and sometimes bears bulbils in the axils. The<br />
drooping flowers occur in lax panicles with inflated,<br />
tubular, 4-lobed calyx that is about 3cm long. The calyx<br />
lobes are triangular and very acute with greenish yellow<br />
and purplish base. The tubular 4-lobed, gamopetalous<br />
corolla are contracted above the base and a little longer<br />
than the calyx. The corolla lobes are ovate – lanceolate,<br />
abruptly acute – acuminate and reddish purple at the<br />
upper part. Plantlets may grow along the notches of the<br />
leaf margins and can develop while still attached to the<br />
plant or when detached. The plant is native to<br />
Madagascar, introduced to and now naturalized in many<br />
parts of Tropical Africa, Asia and South America<br />
(Hutchinson and Dalziel, 1954).<br />
The plant can be used in treating high blood pressure,<br />
stroke, convulsion, pain, epilepsy, candidiasis, bladder<br />
infection and also as an anti-poison (Anonymous, 2005).<br />
In traditional medicine, B. pinnatum has been used to<br />
treat infections, rheumatism, inflammation, hypertension<br />
and kidney stones (Wikipedia, 2009). The pounded fresh
material is applied as a poultice for sprains, boils,<br />
abscess, eczema, infections, burns, carbuncle and<br />
erysipelas. Okwu and Josiah (2006) reported that the<br />
availability of ascorbic acid in B. pinnatum provides the<br />
biochemical basis for the ethnomedical use of the plant<br />
extract for the treatment and prevention of infections, cold<br />
and other diseases like prostrate cancer. Glycosides,<br />
steroids, flavonoids, bufadienolides, organic acids,<br />
alkaloids, tannins, phenolic compounds, gums, mucilages,<br />
lignin, etc., have been detected in the leaves of B.<br />
pinnatum (Marriage and Wilson, 1971; Kamboj and<br />
Saluja, 2010). Also, bryophillin A, B and C, a potent cytotoxic<br />
bufadienolide orthoacetate was found in the leaf<br />
extract (Yamagishi et al., 1989). Bryophillin C show<br />
insecticidal properties (Supratman et al., 2000). K.<br />
pinnata contains bufadienolide cardiac glycosides which<br />
can cause cardiac poisoning, particularly in grazing animals<br />
(McKenzie and Dunster, 1986; McKenzie et al.,<br />
1987). Kalanchoe extracts also have immunosuppressive<br />
effects (Lans, 2006).<br />
The flavonoids, polyphenols, triterpenoids and other<br />
chemical constituents of the plant were speculated to<br />
account for the antinociceptive, anti-inflammatory, anti<br />
hypertensive and antidiabetic properties observed in the<br />
aqueous leaf extracts (Ojewole, 2005). Mudi and Ibrahim<br />
(2008) reported that the n-hexane fraction of B. pinnatum<br />
leaves showed antibacterial activity against<br />
Staphylococcus aureus, Klebsiella pneumoniae and<br />
Salmonella typhi, while the ethyl acetate soluble fraction<br />
showed mild activity against Escherichia coli, S. aureus<br />
and S. typhi. Broad spectrum antibacterial and antifungal<br />
activities were detected in the crude leaf extract of B.<br />
pinnatum (Aquil and Ahmad, 2003). The aqueous leaf<br />
extract of B. pinnatum had a neurosedative and muscle<br />
relaxant activities and produced a depressant action on<br />
the central nervous system of mice (Yemitan and<br />
Salahdeen, 2005). This depressant action was attributed<br />
to bufadienolide and other water soluble constituents in<br />
the extract (Salahdeen and Yemitan, 2006). Igwe and<br />
Akunyili (2005) reported that the aqueous leaf extract of<br />
B. pinnatum has a strong analgesic potency comparable<br />
in a time and dose – dependent manner to a non<br />
steroidal anti-inflammatory drug.<br />
Most of these investigations were centered on the leaf<br />
extract of B. pinnatum. However, not much work has<br />
been carried out on the stem of this highly medicinal<br />
plant. The objective of this work therefore was to investigate<br />
the antimicrobial activities of the stem of B.<br />
pinnatum.<br />
MATERIALS AND METHODS<br />
Collection of plant material and phytochemical screening<br />
The stem of B. pinnatum Kurz was collected at Nsukka, Enugu<br />
State and authenticated by Mr. A. Ozioko, a Taxonomist of the<br />
Bioresearch Development and Conservative Programme Centre in<br />
Nsukka, Enugu State. A voucher specimen (U.N.H. No. 1/15) was<br />
Ogochukwu 16343<br />
deposited at the Herbarium in Botany Department, University of<br />
Nigeria, Nsukka, Nigeria. The stem was air dried and pulverized.<br />
300 g of the powdered stem was macerated separately with 1.5 L of<br />
methanol and 1.5 L of distilled water and both were concentrated to<br />
dryness with a vacuum pump. Phytochemical screening was carried<br />
out on the methanol and the aqueous extracts to determine the<br />
secondary metabolites content (Harborne, 1973; Trease and<br />
Evans, 1983).<br />
Test for antimicrobial activity<br />
Antimicrobial tests were carried out on the methanol and aqueous<br />
extracts <strong>using</strong> the agar diffusion method (Pelczar et al., 1993). 200<br />
mg of each extract was dissolved in 2 ml of dimethyl sulphoxide<br />
(DMSO) to obtain 100 mg/ml concentration. Further dilutions of the<br />
stock solution were made <strong>using</strong> a two-fold serial dilution technique,<br />
to give 50, 25, 12.5 and 6.25 mg/ml concentrations. This same<br />
dilution was carried out on gentamicin (as a reference drug) to<br />
obtain 100, 50, 25, 12.5 and 6.25 µg/ml, concentrations. Nutrient<br />
agar medium was used to test the following isolates: S. typhi, P.<br />
aeruginosa, S. aureus, B. subtilis, C. albicans and A. niger. These<br />
organisms were clinical isolates obtained <strong>from</strong> the University of<br />
Nigeria Medical Centre, Nsukka. They were identified at the<br />
Department of Microbiology, University of Nigeria, Nsukka. S. typhi,<br />
P. aeruginosa, S. aureus and B. subtilis were maintained on blood<br />
agar slants at 4°C before use, while C. albicans and A. niger (fungi)<br />
were preserved on Sabourand’s dextrose agar (Oxoid) slants at<br />
4°C, prior to use. 20 ml of sterile solidified Mueller-Hinton nutrient<br />
agar was poured into a sterile Petri dish and seeded with 0.1 ml of<br />
standardized broth culture of the test micro-organism (1.0 × 10 7<br />
cfu/ml). This was carried out for all the test micro-organisms. Five<br />
equidistant wells were made in each of the plates with a sterile 6.0<br />
mm diameter cork borer. Using a sterile dropper, 0.3 ml of each of<br />
100, 50, 25, 12.5 and 6.25 mg/ml concentration of the extracts were<br />
dispensed into each corresponding well, made in the plates. A well<br />
containing gentamicin was made in each of the plates seeded with<br />
the bacteria, while the plates seeded with fungi had ketoconazone<br />
in the well, as a reference drug. The plates were allowed to stand<br />
for 1 h for the prediffusion of the extract to occur. The plates with<br />
bacteria were incubated at 37°C for 24 h while those with fungi<br />
were incubated at 25°C for 48 h. They were observed and the<br />
presence of zones of inhibition around the wells were measured<br />
and taken as an indication of antimicrobial activity (Alade and Irobi,<br />
1993). The experiment was carried out in two replicates and the<br />
mean for each organism was determined.<br />
For the determination of MIC, methanol and aqueous extracts, as<br />
well as gentamicin (as a reference drug) were used on the<br />
susceptible micro-organisms. The agar diffusion method (Pelczar et<br />
al., 1993) was adopted. 200 mg of each extract was dissolved in 2<br />
ml of DMSO to obtain 100 mg/ml concentration. Two-fold serial<br />
dilution was made to obtain 50, 25, 12.5 and 6.25 mg/ml<br />
concentrations. The same two-fold dilutions of 100 µg/ml<br />
gentamicin were made to obtain 50, 25, 12.5 and 6.25 µg/ml<br />
concentrations. These concentrations were put into wells bored in<br />
the seeded agar plates containing the susceptible micro-organisms,<br />
as above. The experiment was carried out in two replicates. The<br />
agar plates were placed in an incubator at 37°C for 24 h, after<br />
which the mean diameter of the zone of inhibition was measured.<br />
The graph of the square of the inhibition zone diameter was plotted<br />
against log concentration for each micro-organism. A regression<br />
line was drawn through the points. From these graphs, the<br />
representative MIC values were determined as the antilogarithm of<br />
the intercept on the logarithm of concentration axis. Analysis of<br />
variance (ANOVA) was determined on the data obtained, while the<br />
multiple comparisons were carried out between treatment means<br />
<strong>using</strong> Duncan’s multiple range tests at P< 0.05 confidence level<br />
(Edafiogho, 2006).
16344 Afr. J. Biotechnol.<br />
RESULTS<br />
Table 1. Result of the phytochemical analyses of the methanol and aqueous extracts of<br />
Bryophyllum pinnatum stem.<br />
Test Methanol extract Aqueous extract<br />
Acidic compounds - -<br />
Alkaloids +++ ++<br />
Carbohydrates +++ +++<br />
Fats and Oil - -<br />
Flavonoids ++ -<br />
Glycosides +++ ++<br />
Proteins ++++ +++<br />
Resins ++ -<br />
Saponins + ++++<br />
Steroids ++++ +<br />
Tannins + +<br />
Terpenoids ++++ +<br />
Reducing sugar +++ ++<br />
-, Absent; + present in low concentration; ++ present in moderate concentration; +++ present in high<br />
concentration; ++++ present in very high concentration.<br />
The methanol stem extract revealed the presence of high<br />
concentrations of alkaloids, carbohydrates, glycosides,<br />
proteins, steroids, terpenoids and reducing sugar, while<br />
the aqueous extract showed carbohydrates, proteins and<br />
saponins in high concentration (Table 1). Acidic<br />
compounds, fats and oils were not detected in both<br />
extracts. The results of the antimicrobial activity showed<br />
that the methanol stem extract significantly (P< 0.01)<br />
demonstrated antibacterial activities against B. subtilis<br />
and S. aureus, while the aqueous stem extract<br />
significantly (P< 0.01) showed antibacterial activities<br />
against S. typhi and B. subtilis, both at a concentration of<br />
25 mg/ml and above (Table 2). Also, the methanol and<br />
the aqueous extracts showed the least antibacterial<br />
activities at a concentration of 12.5 mg/ml for S. aureus<br />
and B. subtilis, respectively. However, both extracts did<br />
not show any antimicrobial activity against P. aeruginosa,<br />
C. albicans and A. niger. For both extracts, 100 mg/ml<br />
was significantly (P< 0.01) the most effective against all<br />
the bacteria used. However, for the methanol extract,<br />
100 mg/ml was not significantly different <strong>from</strong> 50 mg/ml,<br />
as regards S. aureus. The lower the concentration, the<br />
lower the effectiveness to the extent that 6.25 mg/ml<br />
concentration exhibited no activity against any microorganism.<br />
Comparatively, gentamicin (the standard drug)<br />
showed significantly (P< 0.01) higher antibacterial<br />
activities against B. subtilis, S. aureus and S. typhi at a<br />
concentration of 12.5 µg/ml and above.<br />
For MIC, the antibacterial activities of the methanol<br />
extract were significantly (P< 0.01) different <strong>from</strong> those of<br />
the aqueous extract and gentamicin (Table 3). S. aureus<br />
showed the lowest MIC in the methanol extract, while S.<br />
typhi demonstrated the highest MIC in the aqueous<br />
extract. However, for gentamicin, the reverse was the<br />
case for MIC. The methanol extract inhibited B. subtilis<br />
more than the aqueous extract. These effects were<br />
significant at P
Ogochukwu 16345<br />
Table 2. Mean inhibitory zone diameter (mm) of different concentrations of methanol and aqueous extracts of Bryophyllum pinnatum stem and gentamicin on the test micro-organisms.<br />
Methanol extract Aqueous extract Gentamicin<br />
Micro-organism<br />
Concentration (mg/ml) Concentration (mg/ml) Concentration (µg/ml)<br />
100 50 25 12.5 6.25 100 50 25 12.5 6.25 100 50 25 12.5 6.25<br />
S. typhi - - - - - 18.0 ± 1.0a 14.0 ± 0.0i 9.5 ± 0.5o - - 29.5 ± 0.5b 28.0 ± 0.0j 21.0 ± 0.0p 17.5 ± 0.5k -<br />
B. subtilis 25.0 ± 0.0c 21.5 ±0.5g 20.0 ± 0.0q - - 24.0 ± 1.0c 20.5 ± 0.5g 15.5 ± 0.5t 13.0 ± 1.0t - 37.5 ± 0.5d 32.0 ± 0.0h 24.5 ± 0.5s 23.0 ± 0.0u -<br />
S. aureus 22.5 ± 0.5e 21.0 ± 0.0e 17.0 ± 1.0m 11.0 ± 1.0v - - - - - - 34.0 ± 0.5f 31.0 ± 0.0l 30.0 ± 0.0l 21.5 ± 0.5w -<br />
P. aeruginosa - - - - - - - - - - - - - - -<br />
C. albicans - - - - - - - - - - - - - - -<br />
A. niger - - - - - - - - - - - - - - -<br />
- , no activity. Values represent means ± standard error. Means followed by the same letter(s) within the same row and column are not significantly different.<br />
Table 3. Minimum inhibitory concentrations (MIC) of gentamicin, methanol and aqueous extracts of<br />
Bryophyllum pinnatum stem on the test micro-organisms.<br />
Micro-organism<br />
the leaf extracts they obtained <strong>from</strong> the traditional<br />
method. In this investigation, the methanol extract<br />
of the stem of B. pinnatum was more active than<br />
the aqueous extract. This is also similar to the<br />
work of Akinsulire et al. (2007) who reported that<br />
of all the extracts of B. pinnatum leaf, the<br />
methanol extract was the most active. Aquil and<br />
Ahmad (2003) reported that the ethanolic extract<br />
of B. pinnatum leaves had broad-spectrum<br />
antimicrobial activity. Ofokansi et al. (2005)<br />
reported that B. pinnatum leaf is effective in the<br />
treatment of typhoid fever and other bacterial<br />
infections, particularly those caused by S. aureus,<br />
E. coli, B. subtilis, P. aeruginosa, Klebsiella<br />
Methanol extract<br />
(mg/ml)<br />
Aqueous extract<br />
(mg/ml)<br />
Gentamicin<br />
(µg/ml)<br />
Salmonella typhi - 9.98 ± 0.01 c 5.25 ± 0.01 e<br />
Bacillus subtilis 8.42 ± 0.01 a 6.42 ± 0.1 d 5.83 ± 0.01 f<br />
Staphylococcus aureus 6.29 ± 0.01 b - 5.97 ± 0.01 g<br />
-, No activity. Values represent means ± standard error. Means followed by the same letter(s) within the same row<br />
and column are not significantly different.<br />
aerogenes, K. pneumoniae and S. typhi. These<br />
investigations supported the use of B. pinnatum in<br />
treating the placenta and navel of a new born<br />
baby, which heal fast and prevent infections<br />
(Okwu, 2003).<br />
Taylor (2010) explained that the traditional use<br />
of B. pinnatum for the treatment of <strong>internal</strong> and<br />
external infections is supported by the fact that the<br />
leaves have antibacterial, antiviral and antifungal<br />
activities. An aqueous extract of the leaves<br />
administered topically and <strong>internal</strong>ly has been<br />
shown to prevent and treat leishmaniasis in both<br />
human and animals. In addition, the traditional<br />
uses of the plant for upper respiratory conditions<br />
and cough might be explained by the report that<br />
shows that the leaf juice has potent anti-histamine<br />
and anti-allergic activities. In vivo studies with rats<br />
and guinea pigs showed that the leaf juice was<br />
able to protect against chemically induced<br />
anaphylactic reactions and death by selectively<br />
blocking histamine receptors in the lungs. Another<br />
in vivo study showed that the leaf extract<br />
protected mice <strong>from</strong> ulcer-inducers such as<br />
stress, aspirin, ethanol and histamine, thus<br />
validating the traditional use of the plant for gastric<br />
ulcers. Other in vivo investigations confirmed that<br />
the leaf extract can reduce fever, provides antiinflammatory,<br />
pain-relieving and muscle-relaxant
16346 Afr. J. Biotechnol.<br />
effects. Its anti-inflammatory effects have been partially<br />
attributed to the immunomodulatory and immune<br />
suppressant effects. Animal studies have shown that the<br />
leaf extract possesses sedative and central nervous<br />
system depressant action. These effects were attributed<br />
partially to the ability to increase the levels of a neuro<br />
transmitter, Gamma aminobutyric acid (GABA), in the<br />
brain (Taylor, 2010). Results obtained <strong>from</strong> animal<br />
studies indicate that the aqueous and methanol extracts<br />
of B. pinnatum leaf possess antihypertensive properties.<br />
This lends credence to the folkloric use of the herb in the<br />
management of hypertension by some Yoruba people of<br />
Western Nigeria (Ojewole, 2002).<br />
In this investigation, 100 mg/ml was the most effective<br />
against the susceptible bacteria used and the lower the<br />
concentration, the lower the effectiveness, to the extent<br />
that 6.25 mg/ml showed no activity against any microorganism.<br />
This is similar to the work of Nwadinigwe<br />
(2009), who reported that the 150 mg/ml concentration of<br />
the ethyl acetate fraction of Emilia sonchifolia was the<br />
most effective against the bacteria used. Also, the lower<br />
the concentration, the lower the effectiveness to the<br />
extent that 9.375 and 4.688 mg/ml showed no activity<br />
against any micro-organism. In this work, S. aureus<br />
showed the lowest MIC value, while S. typhi<br />
demonstrated the highest MIC. This is somehow similar<br />
to the work of Nwadinigwe (2009) who reported that B.<br />
subtilis exhibited the lowest MIC value, while S. typhi<br />
showed the highest MIC for the ethyl acetate fraction of<br />
E. sonchifolia.<br />
In conclusion, B. pinnatum stem has the potential to be<br />
used as an antimicrobial agent, just like the leaves.<br />
However, further laboratory and clinical studies are<br />
required to determine its potency and safety.<br />
REFERENCES<br />
Akinpelu DA (2000). Antimicrobial activity of Bryophyllum pinnatum<br />
leaves. Fitoterapia 71:193-194.<br />
Akinsulire OR, Aibin IE, Adenipekun T, Adelowotan T, Odugbemi T<br />
(2007). In vitro antimicrobial activity of crude extracts <strong>from</strong> plants,<br />
Bryophyllum pinnatum and Kalanchoe crenata. Afr. J. Trad. Compl.<br />
Alt. Med. 4:338-344.<br />
Alade PI, Irobi ON (1993). Antimicrobial activities of crude leaf extracts<br />
of Acalypha wilkesiana. J. Ethnopharmacol. 39:171-174.<br />
Anonymous (2005). Checklist of medicinal plants of Nigeria and their<br />
uses. Jamoe pub. in Assoc. with Trinity-Biz pub., Nigeria.<br />
Aquil F, Ahmad I (2003). Broad-spectrum antibacterial and antifungal<br />
properties of certain traditionally used <strong>India</strong>n medicinal plants. World<br />
J. Microbiol. Biotechnol. 19:653-657.<br />
Edafiogho DOC (2006). Computer graphics, spreadsheet (Excel) and<br />
SPSS. University of Nigeria Press Ltd., Nigeria.<br />
Harborne JB (1973). Phytochemical methods. Chapman and Hall,<br />
London.<br />
Hutchinson J, Dalziel JM (1954). Flora of West Tropical Africa. The<br />
Crown Agent for Colonies, Westminister, London.<br />
Igwe SA, Akunyili DN (2005). Analgesic effects of aqueous extracts of<br />
the leaves of Bryophyllum pinnatum. Pharm. Biol. 43:658-661.<br />
Kamboj A, Saluja A (2010). Microscopical and preliminary<br />
phytochemical studies on aerial parts (leaves and stem) of<br />
Bryophyllum pinnatum Kurz. Pharmacol. J. 2: 254-259.<br />
Lans CA (2006). Ethnomedicines used in Trinidad and Tobago for<br />
urinary problems and Diabetes mellitus. J. Ethnobiol. Ethnomed. 2:45<br />
DOI 10. 1186/1746-4269-2-45.<br />
Marriage PB, Wilson DG (1971). Analysis of the organic acids of<br />
Bryophyllum calycinum. Can. J. Biochem. 49:282-295.<br />
Mckenzie RA, Dunster PJ (1986). Hearts and flowers: Bryophyllum<br />
poisoning of cattle. Aust. Vet. J. 63:222-227.<br />
Mckenzie RA, Franke FP, Dunster PJ (1987). The toxicity to cattle and<br />
bufadienolide content of six Bryophyllum species. Aust. Vet. J.<br />
64:298-301.<br />
Mudi SY, Ibrahim H (2008). Activity of Bryophyllum pinnatum Kurz<br />
extracts on respiratory tract pathogenic bacteria. Bayero J. Pure and<br />
Appl. Sci. 1:43-48.<br />
Nwadinigwe AO (2009). Antimicrobial activities of some fractions of the<br />
extract of Emilia sonchifolia (Linn.) DC (Asteraceae). Plant Prod. Res.<br />
J. 13:31-34.<br />
Ofokansi KC, Esimone CO, Anele CK (2005). Evaluation of the in-vitro<br />
combined antibacterial effects of the leaf extracts of Bryophyllum<br />
pinnatum (Fam.Crassulaceae) and Ocimum gratissimum (Fam.<br />
Labiatae). Plant Prod. Res. J. 9:23-27.<br />
Ojewole JAO (2002). Antihypertensive properties of Bryophyllum<br />
pinnatum (Lam) Oken leaf extracts. Am. J. Hypert.15 (4): A34-A39.<br />
Ojewole JAO (2005). Antinociceptive, anti-inflammatory and antidiabetic<br />
effects of Bryophyllum pinnatum (Crassulaceae) leaf aqueous<br />
extract. J. Ethnopharmacol. 99: 13-19.<br />
Okwu DE (2003). The potentials of Ocimum gratissimum, Pengularia<br />
extensa and Tetrapleura tetraptera as spice and flavouring agents.<br />
Nig. Agric. J. 34: 143-148.<br />
Okwu DE, Josiah C (2006). Evaluation of the chemical composition of<br />
two Nigerian medicinal plants. Afr. J. Biotechnol. 5:357-361.<br />
Pelczar MJ, Chan ECS, Krieg NR (1993). Microbiology: concepts and<br />
applications. McGraw Hill Inc., New York.<br />
Salahdeen HM, Yemitan OK (2006). Neuropharmacological effects of<br />
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Biomed. Res. 9: 101-107.<br />
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Fitoterapia 76: 187-193.
African Journal of Biotechnology Vol. 10(72), pp. 16347-16350, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2295<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Determining the relationship between the application of<br />
fixed appliances and periodontal conditions<br />
Ahmad Sheibaninia 1 *, Mohammad Ali Saghiri 2 , A. Showkatbakhsh 3 , C. Sunitha 4 , S. Sepasi 1 ,<br />
M. Mohamadi 5 and N. Esfahanizadeh 6<br />
1 Department of Orthodontic Fellow of Orthosurgery, Dental Branch, Islamic Azad University, Tehran, Iran.<br />
2 Department of Dental and Biological Materials, Kamal Asgar Research Center, MI, USA.<br />
3 Department of Orthodontic, Director of Orthosurgery Fellowship, Dental School, Shaheed Beheshti University of<br />
Medical Sciences, Tehran, Iran.<br />
4 Department of Conservative Dentistry and Endodontics, Saveetha Dental College Hospitals, Saveetha University,<br />
Chennai, <strong>India</strong>.<br />
5 Private Practice, Tehran, Iran.<br />
6 Department of periodontics, Dental Branch, Islamic Azad university, Tehran, Iran.<br />
Accepted 7 October, 2011<br />
The aim of this work was to study the relationship between the use of fixed appliances and periodontal<br />
conditions during orthodontic treatment. A Historical Cohort study design was used. The treatment<br />
group consisted of 30 patients undergoing fixed orthodontic treatment and 30 patients were used as<br />
controls. Both patient groups had no background of trauma resulting <strong>from</strong> bracket which might affect<br />
the gingival status and the control group had no history of previous orthodontic treatment. Periodontal<br />
condition of both groups was evaluated and assessed with bleeding index and periodontal hyperplasia.<br />
Exact Fisher test was used for statistical analysis. The mean age for the treatment group and the<br />
control group was 15.1±1.5 years and 14.7 ± 2.4 years, respectively. Gingival bleeding was 50 and<br />
76.7%, while gingival recession was 3.3 and 0% in control and treatment groups (P
16348 Afr. J. Biotechnol.<br />
Table 1. Distribution of studied groups according to age and periodontal symptoms <strong>using</strong> fixed orthodontic appliances.<br />
Group Mean age<br />
Gingival bleeding<br />
No Yes<br />
Gingival recession<br />
No Yes<br />
Gingival hyperplasia<br />
No Yes<br />
Control (N1 = 30) 15.14 ± 1.46 15 (50%) 15 (50%) 29 (96.7%) 1 (3.3%) 26 (86.6%) 4 (13.3%)<br />
Cases (N2 = 30) 14.73 ± 2.39 7 (23.3%) 23 (76.7%) 30 (100%) 0 16 (53.3%) 14 (46.6%)<br />
Test result P
control group. The amount of attributable risk of gingival<br />
enlargement (grade 2 and more) in the study group was<br />
33.3% as compared to the control group.<br />
DISCUSSION<br />
According to the results of the experimental group, 23<br />
persons (76.6%) complained of gingival bleeding, 16<br />
persons (53.3%) showed grade 1 gingival hyperplasia<br />
and less, and 14 persons (46.6%) showed grade 2<br />
gingival hyperplasia and more, and gingival recession<br />
was not observed in any of the experimental groups.<br />
There is a significant relationship between gingival<br />
bleeding (p
16350 Afr. J. Biotechnol.<br />
causes and prevent possible progress of the<br />
periodontal problem.<br />
ACKNOWLEDGEMENT<br />
We thank Dr Prasanna Neelakantan for invaluable help in<br />
many sections of this manuscript.<br />
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(2005). Arch wire ligation techniques, microbial colonization and<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16351-16360, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1709<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Use of pheromone-baited traps for monitoring Ips<br />
sexdentatus (Boerner) (Coleoptera: Curculionidae) in<br />
oriental spruce stands<br />
Gonca Ece Ozcan 1 , Mahmut Eroglu 1 and Hazan Alkan Akinci 2<br />
1 Department of Forest Engineering, Faculty of Forestry, Karadeniz Technical University, Trabzon 61080, Turkey.<br />
2 Department of Forest Engineering, Faculty of Forestry, Artvin Coruh University, 08000 Artvin, Turkey.<br />
Accepted 7 October, 2011<br />
The population level and flight periods of Ips sexdentatus (Boerner) (Coleoptera: Curculionidae) was<br />
determined according to certain stand dynamics, altitude steps and temperatures based on the capture<br />
amounts in pheromone traps hung on some spruce stands in the oriental spruce, Picea orientalis (L.)<br />
Link. Forests of Turkey in 2006 to 2009. Average number of I. sexdentatus was statistically different<br />
between years and average annual highest number of captured beetles showed differences according<br />
to regions. The averages of the numbers of beetles caught in two different altitudes in two separate<br />
years are statistically different. In higher altitudes, average number of beetles caught per trap was<br />
higher. Provided data showed that I. sexdentatus has at least 2 generations in the forests of the region.<br />
First adult flight ranged <strong>from</strong> end of April to mid-June in both altitude steps, while second flight started<br />
in mid-June and continued until the mid-September. It was concluded that the beetles that were caught<br />
during fourth week of August and first week of September were the adults that would start a third<br />
generation. The predator species Thanasimus formicarius (L.) (Coleoptera: Cleridae) was caught in the<br />
pheromone traps as well as I. sexdentatus. In each trap, an average of 43.92 I. sexdentatus adults was<br />
captured per 1 T. formicarius adult. A total of 18 I. typographus (L.) (Coleoptera: Curculionidae) adults<br />
were captured by 5 traps containing Tryphreon Ipstyp aggregation pheromones. The trapping works in<br />
the research region have once again detected the existence of this species, which has densities that<br />
cannot be detected by other methods, and which is very dangerous for spruce stands since the first<br />
detection 75 years ago.<br />
Key words: Ips sexdentatus, pheromone baited traps, monitoring.<br />
INTRODUCTION<br />
Humans and insect pests are the most important biotic<br />
factors threatening oriental spruce forest wealth in the<br />
Eastern Black Sea region of Turkey (Ozcan and Alkan,<br />
2003). In sensitive nature of the region, spruce forests<br />
have an uppermost function expected <strong>from</strong> forests in<br />
water supplying, soil protection and preventing natural<br />
destructions (Eroglu et al., 2005). Regional forests are<br />
under serious pressure of people that live in mountain<br />
villages. This pressure makes forests extremely exposed<br />
against the attacks of some bark beetles (Benz, 1984).<br />
*Corresponding author. E-mail: goncaece@hotmail.com. Tel:<br />
+90 312 785 27 12. Fax: +90 462 325 74 99.<br />
Scolytid bark beetles (Coleoptera: Curculionidae) are<br />
important forest pests all over the world (Bakke, 1989).<br />
Most bark beetle species infest recently dead trees<br />
(Wood, 1982); some bark beetle species are known to<br />
attack and kill living trees, ca<strong>using</strong> large economic losses<br />
(Berryman and Ferrell, 1988; Turchin et al., 1991; Reeve,<br />
1997). Natural distribution of oriental spruce, Picea<br />
orientalis (L.) Link., in Turkey (approximately 300<br />
thousand ha), in Eastern Black Sea region is generally at<br />
the seaside slopes of Black Sea mountain chains<br />
between the altitudes of 500 to 2400 m. Optimal<br />
distribution is over 1200 m (Saatcioglu, 1976; Demirci,<br />
1991). Oriental spruce stands are under serious threats<br />
of Dendroctonus micans (Kugelann), a very important<br />
pest directly attacking healthy trees; and Ips sexdentatus
16352 Afr. J. Biotechnol.<br />
(Boerner) and Ips typographus (L.) (Coleoptera:<br />
Curculionidae), both of which can easily have a primary<br />
position and cause a great outbreak. The attacks of D.<br />
micans in the oriental spruce forests of Turkey first<br />
started in 1966 (Acatay, 1968) and extended to the entire<br />
spruce stands in early 2000s (Eroglu et al., 2005). I.<br />
typographus outbreaks that were first discovered in 1984<br />
(Alkan, 1985) have caused major forest losses until 2007<br />
(Gokturk and Eldemir, 2005; Alkan-Akinci et al., 2009). I.<br />
sexdentatus is one of the most important pests of the<br />
forests of Turkey (Oymen, 1992). It has caused death of<br />
Pinus sylvestris L. and P. radiate D. Don. suffering <strong>from</strong><br />
drought stress in central and Southern France, Northern<br />
Spain and Portugal (Goix, 1977; Perrot, 1977; Lieutier et<br />
al., 1988; Paiva et al., 1988). Outbreaks have occurred<br />
on P. orientalis and P. sylvestris in Turkey (Schimitschek,<br />
1939; Canakcıoglu, 1983; Schönherr et al., 1983; Oymen<br />
and Selmi, 1997). The existence of this beetle in Turkish<br />
pine and spruce forests has a very long past and<br />
recently, especially the great outbreaks in spruce forests<br />
have been recorded as the most outstanding disasters in<br />
the country (Bernhard, 1935; Schimitschek, 1953). This<br />
beetle has spread to a very wide area; <strong>from</strong> Japan to<br />
Southern Europe and Trans-Caucasia, <strong>from</strong> the Atlantic<br />
to the Pacific. This beetle prefers dead, dying, or<br />
weakened trees as its breeding material and is referred to<br />
as secondary insects, although it can become primary<br />
pest under outbreak conditions. The wood under the<br />
gallery is stained blue <strong>from</strong> fungi transferred by the<br />
beetles (Chararas, 1962). As in the case of other conifer<br />
bark beetles, I. sexdentatus acts as a vector for a blue<br />
stain fungus which also damages the tree (Lieutier et al.,<br />
1989). This way, hundred hectares of forests can be<br />
easily destroyed (Schimitschek, 1953; Keskinalemdar<br />
and Ozder, 1995; Oymen and Selmi, 1997; Selmi, 1998,<br />
Yuksel and Tozlu, 2000). It prefers trees with thick bark.<br />
Moreover, it is observed to attack begining <strong>from</strong> the top<br />
sections of the trees (Canakcioglu, 1983). This beetle<br />
kills the trees in spruce forests in masses and thus,<br />
causes interruption of canopy in stand canopy closure<br />
and serious structural deteriorations within the stand<br />
(Ozcan, 2009).<br />
The development of mass deaths which appeared<br />
suddenly actually was completed in a long process<br />
(Yuksel, 1998). In Turkey, at Trabzon Yanbolu Valley -<br />
Santa and Degirmendere Valley - Meryemana spruce<br />
forests, 250,000 m 3 tree loss caused by I. sexdentatus in<br />
1928 (Bernhard, 1935) and had reached approximately<br />
one million m 3 in 1930s (Schimitschek, 1953). It was<br />
recorded that the total damage of the beetle in 1930 to<br />
1994 was over 1.500.000 m 3 (Keskinalemdar and Ozder,<br />
1995). I. sexdentatus is a native species of oriental<br />
spruce forests and until very recently when D. micans<br />
reached these forests and I. typographus developed an<br />
outbreak, it was the only threatening bark beetle of these<br />
forests. Great scale destructions of oriental spruce<br />
forests which were especially recorded in the last century<br />
and which were told by the public previously requires<br />
regular monitoring of population changes and densities of<br />
I. sexdentatus. The primary purpose of sampling the<br />
populations in these types of monitoring programs is to<br />
classify the population in terms of being under or over a<br />
critical threshold (Wainhouse, 2005). The validity of <strong>using</strong><br />
pheromones has been proven for monitoring pests<br />
(Shorey, 1991). Lindgren funnel traps baited with aggregation<br />
pheromones are widely used to monitor and<br />
manage populations of economically important bark<br />
beetles (Hayes et al., 2008). Funnel traps are especially<br />
useful for monitoring the adult stages of beetles if proper<br />
attractors are available in the market. Although, they<br />
have the disadvantage of catching the natural enemies<br />
that react to the pheromone, funnel traps mainly provide<br />
“clean” sampling since they are species-specific<br />
(Wainhouse, 2005). Hagler (2000) expresses the<br />
compatibility of the use of pest-specific pheromones to<br />
biological control as stated by Shorey (1991). As with the<br />
other parabiologicals, pheromones are designed to be<br />
used as one of several components of an overall IPM<br />
program (Hagler, 2000). For example, the use of scolytid<br />
aggregation pheromones in traps for mass-trapping to<br />
reduce the density of local populations in the forest.<br />
Research on the role of semiochemicals in the ecology<br />
and behavior of insect pests has provided novel and<br />
potentially very powerful techniques for the management<br />
of insect populations (Wainhouse, 2005). I. sexdentatus<br />
is a bark beetle for which aggregation pheromones are<br />
important in determining the beetle colonization process<br />
(Bouhot et al., 1988). The male beetle initiates the boring<br />
and releases an aggregation pheromone consisting<br />
mainly of ipsdienol (Vité et al., 1974). Traps can be used<br />
in a large scale (Minks, 1977) for monitoring the beetle<br />
population (Lindelow and Schroeder, 2001; Wermelinger,<br />
2004). Moreover, monitoring based on pheromone traps<br />
can provide information on beetle population density and<br />
flight periods, based on yearly changing captured beetle<br />
number (Faccoli and Stergulc, 2006). In Turkey, first<br />
capturing trials against I. sexdentatus with pheromone<br />
traps started in 1982 in oriental spruce forests; the control<br />
measures against this beetle has continued through<br />
mechanical methods, variously designed funnel traps and<br />
biological agents (Serez and Eroglu, 1991; Serez, 2001).<br />
A total of 6290 pheromone traps were hung in Artvin<br />
forests between 2004 to 2009 in 4050 hectare area and<br />
11,482,000 adults were captured (Ozkaya et al., 2010).<br />
In this study that was based on the capture amounts in<br />
pheromone traps, the population levels, flight periods,<br />
flight durations and the time intervals of most catches of I.<br />
sexdentatus were determined according to certain stand<br />
dynamics, altitude steps and temperatures. With these<br />
evaluations, it was aimed to research the opportunities of<br />
more efficient utilizations of pheromone traps, in order to<br />
provide better monitoring of pest population levels and<br />
develop a more comprehensive and economic management<br />
strategy against the pest.
Table 1. Ips sexdentatus amounts captured in Macka Directorate of Forest Enterprises in 2006 to 2009 by funnel traps.<br />
Ozcan et al. 16353<br />
Region Year Number of traps Total number of beetles caught in traps Average number of beetle per trap<br />
2006 40 11608 290.20<br />
Yesiltepe 2007 65 33390 513.69<br />
2008 80 19469 243.36<br />
2009 45 28362 630.27<br />
Macka<br />
Catak<br />
Esiroglu<br />
Hamsikoy<br />
MATERIALS AND METHODS<br />
2006 35 5165 147.57<br />
2007 35 5890 168.29<br />
2008 40 18786 469.65<br />
2009 40 8354 208.85<br />
2006 50 8369 167.38<br />
2007 40 4221 105.53<br />
2008 40 6049 151.23<br />
2009 40 4415 110.38<br />
2006 30 770 25.67<br />
2007 35 3297 94.20<br />
2008 35 21500 614.29<br />
2009 35 31770 907.71<br />
2006 30 5079 169.30<br />
2007 41 11882 289.80<br />
2008 35 12905 368.71<br />
2009 35 7810 223.14<br />
This study was performed in Eastern Black Sea Region of Turkey,<br />
at the oriental spruce, Picea orientalis (L.) Link. stands with a<br />
natural dispersion area of 297,397 ha. The materials of this study<br />
are 1652 Triphreon Ipssex and 96 Triphreon Ipstyp commercially<br />
branded pheromone preparations, 826 pheromone traps containing<br />
these preparations, hung in spruce stands at Trabzon Regional<br />
Directorate of Forestry, Macka Directorate of Forest Enterprises,<br />
Yesiltepe, Macka, Catak, Esiroglu and Hamsikoy. The dominant<br />
tree species is oriental spruce. There are Scotch pine, beech,<br />
hornbeam, oak and chestnut in mixed stands in the study area and<br />
in the vicinity. Divisions of Forestry between the years 2006 to<br />
2009, and a total of 249,091 I. sexdentatus, 18 I. typographus<br />
adults caught in these traps, and 207 Thanasimus formicarius<br />
adults only caught in 40 traps in 2006.<br />
For monitoring I. sexdentatus flight periods, 75 traps containing<br />
Triphreon Ipssex branded pheromone preparations were used in<br />
2006, and 125 of these were used in 2009. For this purpose, the<br />
pheromone traps were placed in certain forest areas in 2006 at<br />
Yesiltepe and Macka regions, in 2009 at Yesiltepe, Macka and<br />
Catak regions, with 100 to 120 m intervals to provide a<br />
homogeneous dispersion. Pheromone traps were hung 15 to 20 m<br />
to the edge of the stand, inside the openings in the forest and<br />
roadsides during mid-April in both years. They were placed<br />
between two poles and 1.5 m higher over the ground. The traps<br />
were fixed by ropes to the wooden poles both <strong>from</strong> top and bottom.<br />
The traps were numbered with special cards attached. The altitudes<br />
and exposures of the points, where the traps were hung were<br />
recorded and first pheromone preparations were placed in the<br />
traps. First preparations were replaced in mid-June and the traps<br />
were kept in the forest until mid-September. The traps were<br />
regularly controlled after being placed in the forest; captured<br />
beetles were counted and recorded. Additionally, in 2006 a total of<br />
18 traps and in 2009 a total of 30 traps containing Triphreon Ipstyp<br />
commercially branded pheromone preparations were used. T.<br />
formicarius adults caught in the 31 traps between 3 May and 24<br />
August 2006 at Yesiltepe region, and I. sexdentatus adults caught<br />
during the same period have been assessed together.<br />
Statistical analysis<br />
All statistical analyses were performed <strong>using</strong> SPSS 13.0 for<br />
Windows ® software. Logarithmic transformation was applied to the<br />
I. sexdentatus amounts gathered <strong>from</strong> capture results that did not<br />
show normal dispersions. Independent sample T-test and one way<br />
ANOVA were used depending on the variables.<br />
RESULTS<br />
I. sexdentatus amounts captured by a total of 826 funnel<br />
traps in the spruce stands of Macka Directorate of Forest<br />
Enterprises and Yesiltepe, Macka, Catak, Esiroglu and<br />
Hamsikoy forestry divisions in 2006, 2007, 2008 and<br />
2009 are given in Table 1. Without taking the years into<br />
account, the average number of beetles per trap has
16354 Afr. J. Biotechnol.<br />
Table 2. Number of beetles captured at two altitude ranges in 2006 and 2009 at Yesiltepe, Macka and Catak Regions.<br />
Year<br />
Number<br />
of traps<br />
2006 75<br />
2009 125<br />
Average number of<br />
beetles per traps<br />
223,76<br />
329,05<br />
Altitude range<br />
close values in Macka, Catak and Hamsikoy regions,<br />
while it was higher in Yesiltepe and Esiroglu regions.<br />
Average number of beetles per trap was higher in<br />
Yesiltepe in 2007 and 2009, higher in Macka in 2008,<br />
higher in Esiroglu in 2008 and 2009; while Catak and<br />
Hamsikoy had the same rates of captures in all years<br />
(Table 1).<br />
In Yesiltepe and Macka regions, 61.48% of all beetles<br />
captured by the traps in 2006 were received <strong>from</strong> 10<br />
traps. In these traps, average number of beetles per trap<br />
was 1031.2 (436 to 2580), while it was 99.4 in the<br />
remaining traps. In Yesiltepe, Macka and Catak regions<br />
59.93% of all beetles captured by the traps in 2009 were<br />
received <strong>from</strong> 12 traps. In these traps, average number of<br />
beetles per trap was 2054.33 (920 to 4761) while it was<br />
145.83 in the remaining traps. The higher captures at<br />
these two divisions in 2006 and 2009 happened in<br />
different compartments. Average highest number of<br />
beetles per year has also differed according to divisions<br />
(Table 1). In 2009, at a compartment in Yesiltepe region<br />
where traps 46, 47 and 48 were located between<br />
altitudes of 1200 to 1250 m and an average of 1941.33<br />
beetles were captured per trap; 18 to 20 spruces, with<br />
diameters of 30 to 60 cm, were killed in groups due to<br />
very severe attacks by I. sexdentatus in 2010.<br />
More also, in Yesiltepe and Macka regions in 2006,<br />
25.24% of all captured beetles were received <strong>from</strong> 48<br />
traps between 800 to 1200 m and 74.76% were received<br />
<strong>from</strong> 27 traps at altitudes of 1200 m and higher. At these<br />
altitudes, average numbers of beetles per trap were<br />
88.21 and 464.41, respectively (Table 2). In Yesiltepe,<br />
Macka and Catak Regions in 2009, 46.55% of all<br />
captured beetles were taken <strong>from</strong> 77 traps between 800<br />
to 1200 m, and 53.45% were taken <strong>from</strong> 48 traps at<br />
altitudes of 1200 m and higher. The average numbers of<br />
beetles per trap were 248.64 and 458.04, respectively<br />
(Table 2). Average number of beetles captured both<br />
years in these two altitude ranges have been statistically<br />
different (p0.05). In addition, in<br />
stands with various closures at Yesiltepe and Macka<br />
Number<br />
of traps<br />
Total number of<br />
beetles caught in traps<br />
Percentage of<br />
caught beetles (%)<br />
800 – 1200 m 48 4243 25.24<br />
1200 m and higher 27 12539 74.76<br />
800 – 1200 m 77 19145 46.55<br />
1200 m and higher 48 21986 53.45<br />
regions in 2006 and 2009, the average number of beetles<br />
captured by traps were statistically not different <strong>from</strong><br />
each other (p>0.05). At the research areas, average<br />
number of beetles trapped in stands at different exposures<br />
both years, statistically were not different <strong>from</strong> each<br />
other (p>0.05). However, average number of captures of<br />
the traps with southern exposures (average 384.75) was<br />
higher than the traps with other exposures (average<br />
159.83).<br />
The distribution of the number of beetles, trapped<br />
between 800 to 1200 m and higher than 1200 m in 2006<br />
and 2009 at Yesiltepe, Macka and Catak regions, are<br />
shown in Figures 1 and 2 according to control dates.<br />
These data provided showed that I. sexdentatus has at<br />
least 2 generations in the forests of the region. At<br />
Yesiltepe and Macka regions, on May 3, when the first<br />
control of the traps at the spruce stands were made in<br />
2006 between 800 to 1200 m and higher than 1200 m;<br />
respectively, an average of 2.85 and 0.92 adult beetles<br />
were captured per trap. In 2006, it was observed that first<br />
flight of I. sexdentatus began before 3 May at both<br />
altitude steps. It was detected that the over-wintering<br />
adults mated and their attacks to the host trees began<br />
before May to lay the first eggs that would start the first<br />
generation of this year and that it lasted until the third<br />
week of June at both altitudes in this flight period. It was<br />
also observed that the adults that would start the second<br />
generation began to fly at the third week of June.<br />
Accordingly, the completion of the first generation that<br />
started in early May lasted for 50 to 55 days. On the 24th<br />
of August, when the last control of the traps at both<br />
altitudes were performed, respectively an average of 0.6<br />
and 2.18 captured adults per trap shows that the adult<br />
flights of the beetle in this year continued at least until<br />
end of August (Figure 1).<br />
At Yesiltepe, Macka and Catak regions, on 26 April<br />
2009, when the first control of the traps were performed<br />
at altitudes of 800 to 1200 m and higher than 1200 m,<br />
respectively an average of 0.22 and 0.13 beetles were<br />
captured per trap. This shows that in 2009, at both<br />
altitude steps, first flight of I. sexdentatus started before<br />
26 April. It was detected that the over-wintering adults<br />
mated and their attacks to the host trees began at the last<br />
week of April to lay the first eggs that would start the first<br />
generation in 2009 and that it lasted until the third week<br />
of June at both altitudes in this flight period, just like the
Average number of beetles per trap<br />
140<br />
120<br />
100<br />
80<br />
60<br />
40<br />
20<br />
0<br />
01.05.2006<br />
11.05.2006<br />
21.05.2006<br />
31.05.2006<br />
10.06.2006<br />
20.06.2006<br />
30.06.2006<br />
Control dates of traps<br />
10.07.2006<br />
800-1200m 800 – 1200 m<br />
1200m 1200 m and higher<br />
20.07.2006<br />
30.07.2006<br />
09.08.2006<br />
Ozcan et al. 16355<br />
Figure 1. Number of Ips sexdentatus caught in traps on the control dates at two different altitudes in 2006 at Yesiltepe<br />
and Macka Regions.<br />
previous year.<br />
Furthermore, it was observed that the adults that would<br />
start the second generation of the beetle began to fly in<br />
third week of June. Accordingly, in this year the<br />
completion of the first generation that started in last week<br />
of April continued approximately for 55 to 60 days. On the<br />
4th of September when the last control of the traps at<br />
both altitudes were performed respectively, an average of<br />
2.84 and 3.38 captured adults per trap shows that the<br />
adult flights of the beetle in this year continued at least<br />
until the second week of September (Figure 2). In the<br />
research region, it was seen that the first adult flight<br />
observed in early May and end-April in 2006 and 2009,<br />
reached its highest number after approximately 20 days<br />
after the first flight at both altitude steps and that this high<br />
flight activity continued for approximately 20 days. In<br />
2006, 69.51 and 84.76% of all beetles trapped in the first<br />
and second altitude steps respectively, were captured in<br />
the first flight period; these numbers were 78.37 and<br />
71.27% in 2009 (Figures 1 and 2). In 2006, average<br />
number of beetles caught per trap in the first and second<br />
flight periods was respectively 12.26 and 4.48 at first<br />
altitude step, and respectively 78.72 and 11.79 at the<br />
second altitude step. In 2009, these amounts were<br />
respectively 39.15 and 18.01 at the first altitude step and<br />
respectively 72.78 and 44.79 at the second altitude step.<br />
The predator species T. formicarius was also caught by<br />
the pheromone traps together with I. sexdentatus. During<br />
the control of the traps, the predators, almost all being<br />
alive, were released. Number of I. sexdentatus and T.<br />
formicarius captured in 40 traps in Yesiltepe region<br />
between 3 May and 24 August 2006 are given in Table 3.<br />
All lively 207 T. formicarius adults were taken <strong>from</strong> 31 of<br />
40 traps (77.5%). In each of the eleven different control<br />
dates, an average of 9.36 (1 to 19) T. formicarius was<br />
found in these 31 traps. During the whole trapping<br />
season, these 31 traps averaged 293.42 I. sexdentatus<br />
and 6.68 T. formicarius adults. Each trap averaged 1 T.<br />
formicarius adult against 43.92 I. sexdentatus adults.<br />
Additionally, in 8 different controls; 1 to 6 T. formicarius<br />
adults were found in traps where no I. sexdentatus were<br />
found. Additionally, in 2006, only I. typographus adults<br />
were captured in traps containing I. typographus aggregation<br />
pheromones, <strong>using</strong> 5 Tryphreon Ipstyp commercially<br />
branded pheromone preparations. In these traps,<br />
on controls dated 3rd May, 26th May and 13th June; 2,<br />
11 and 5 I. typographus adults were found. In 2009, 13<br />
traps with the same pheromone preparations were hung<br />
but no I. typographus could be captured.<br />
DISCUSSION<br />
In Yesiltepe, Macka and Catak regions, the average<br />
number of I. sexdentatus trapped in two different years<br />
were found to be statistically different and the average<br />
number of beetles trapped in 2009 was 46.9% more than<br />
that of 2006. In 2006 and 2009, 61.48 and 59.93% of the<br />
total captured beetles were respectively taken <strong>from</strong> 10<br />
and 12 traps. In these traps, the average number of<br />
19.08.2006<br />
29.08.2006
16356 Afr. J. Biotechnol.<br />
Average number of beetles per trap<br />
300<br />
250<br />
200<br />
150<br />
100<br />
50<br />
0<br />
15.04.2009<br />
25.04.2009<br />
05.05.2009<br />
15.05.2009<br />
25.05.2009<br />
04.06.2009<br />
14.06.2009<br />
24.06.2009<br />
Control dates of traps<br />
04.07.2009<br />
14.07.2009<br />
24.07.2009<br />
03.08.2009<br />
800-1200m<br />
800 – 1200 m<br />
1200 1200m m and higher<br />
Figure 2. Number of Ips sexdentatus caught in traps on the control dates at two different altitudes in 2009 at<br />
Yesiltepe, Macka and Catak regions.<br />
Table 3. Numbers of Ips sexdentatus and Thanasimus formicarius, counted in the traps according to control dates.<br />
Trap control<br />
dates<br />
Number of traps with<br />
captured Thanasimus<br />
formicarius<br />
Number of Ips<br />
sexdentatus caught<br />
in traps<br />
Number of Thanasimus<br />
formicarius caught in<br />
traps<br />
13.08.2009<br />
23.08.2009<br />
02.09.2009<br />
Average number of<br />
predator per capture<br />
03.05.2006 1 8 1 1<br />
15.05.2006 9 1579 26 2.89<br />
26.05.2006 15 2486 58 3.87<br />
06.06.2006 8 1707 10 1.25<br />
13.06.2006 19 1794 45 2.37<br />
26.06.2006 3 133 3 1<br />
08.07.2006 12 664 22 1.83<br />
20.07.2006 6 298 9 1.5<br />
02.08.2006 9 258 14 1.56<br />
15.08.2006 6 111 12 2<br />
24.08.2006 5 58 7 1.4<br />
Total 93 9096 207 1.88<br />
beetles per trap was 1031.2 and 2054.33, and 99.4 and<br />
145.83 in the remaining traps. The higher captures at<br />
Yesiltepe and Macka regions in 2006 and 2009 occurred<br />
in different compartments. The highest average number<br />
of beetles captured per year differed according to forestry<br />
divisions (Table 1). At a compartment in Yesiltepe region<br />
where an average of 1941.33 beetles were captured per<br />
trap in 2009, 18 to 20 spruces with 30 to 60 cm diameters<br />
were killed in groups due to very severe attacks by I.<br />
sexdentatus in 2010. Similarly, the increase of average<br />
25.67 and 94.20 captures per trap in Esiroglu region in<br />
2006 and 2007 to 614.29 and 907.71 in 2008 and 2009<br />
may be the precursor of a similar damage impact at this<br />
certain areas in this region. Depending on the beetle’s<br />
population density in the distribution range, the amount<br />
caught by the pheromone traps differ <strong>from</strong> year to year<br />
and <strong>from</strong> region to region.<br />
In Black Sea Region, population of I. sexdentatus is
fluctuated at high densities (Oymen, 1992). Capture<br />
capacities of traps are affected by many factors such as<br />
their being hung to locations where there are suitable<br />
trees for the reproduction of the beetle, the attacks being<br />
near the trees, stand density and wind direction<br />
(Safranyik et al., 2004). The number of the bark beetles<br />
captured in the pheromone traps depends on environmental<br />
and local conditions (Lobinger, 1995). Beetles can<br />
only find the source of the pheromone under average<br />
weather and climate conditions. Having a small number<br />
of flying beetles, or short flight period affects the<br />
capturing efficiency of the traps. Additionally, the position<br />
of the location of the pheromone trap also has a different<br />
effect on capturing efficiency. If traps are hung close to<br />
each other, both affect the other mutually. Traps must be<br />
at least 10 m to the closest tree otherwise some beetles<br />
could attack trees near the trap and damage them<br />
(Serez, 1987). It is estimated that I. sexdentatus are<br />
attracted to pheromone traps <strong>from</strong> a maximum of 80 m<br />
(Jactel, 1991). In an assessment with 38 adult<br />
individuals, 98% of I. sexdentatus adults have flown more<br />
than 5 km, 50% have flown more than 20 km, and 10%<br />
have flown more than 45 km (Jactel and Gaillard, 1991).<br />
Beetles have been found in the stomach of trout in lakes<br />
35 km <strong>from</strong> the nearest spruce forest (Nilssen, 1978).<br />
Dispersal over longer distances depends on transportation<br />
under the bark of logs. Stinking smell caused by<br />
rotten beetles can decrease the capturing efficiency of<br />
the traps (Kretschmer, 1990). Therefore, traps must be<br />
controlled with brief intervals and their being cleaned<br />
after each control, especially after rain and snow, is<br />
essential.<br />
In Yesiltepe, Macka and Catak regions during 2006 and<br />
2009, the average number of beetles trapped bet-ween<br />
800 to 1200 m and at 1200 m and higher altitudes were<br />
statistically different. Average beetle amount captured per<br />
trap at 1200 m was 5.26 times higher in 2006 and 1.84<br />
times higher in 2009, than those in traps at 800 to 1200<br />
m. At altitudes where spruce has optimum distribution,<br />
namely 1200 m and higher, higher amount of trapped<br />
beetles can be explained by having a higher beetle<br />
population. However, number of trapped beetle may<br />
change due to regional differences dependent on stand<br />
characteristics influencing density increase and outbreak<br />
development, ecologic factors such as water economy<br />
and relative humidity, and the features of growing<br />
environment based on bedrock and soil structures.<br />
Captured beetle data gathered <strong>from</strong> Yesiltepe, Macka<br />
and Catak regions in 2006 and 2009 at two different<br />
altitude steps reveal that I. sexdentatus has at least 2<br />
generations in the forests of these regions. This result is<br />
directly supported by other researches based on field<br />
findings. The species has only two generations in central<br />
areas of Eurasia and four to five generations in the<br />
Mediterranean area and in other areas with a long, warm<br />
summer season (Vité et al., 1974). It is known that in this<br />
region, first flight occurs during early April (Besceli and<br />
Ozcan et al. 16357<br />
Ekici, 1969; Serez, 1983) and mid-May and second flight<br />
occurs between mid-June and end-August (Besceli and<br />
Ekici, 1969). It is observed that I. sexdentatus usually<br />
completes 2 generations a year in oriental spruce forests<br />
and that the adults, who could only start the third<br />
generation in suitable weather conditions (Sekendiz,<br />
1991), mate at the end of August and early-September<br />
and lay eggs (Yuksel, 1998). The flight time of the first<br />
generation in the pine forests of the Mediterranean<br />
Region occurs in May, and the second generation’s flight<br />
occurs in August (Tosun, 1977). Under the conditions in<br />
Turkey, usually 2 generations a year is seen; however, a<br />
third generation can be seen under suitable climate<br />
conditions. (Sarıkaya, 2008)<br />
In 2006, at both altitude steps, I. sexdentatus’s first<br />
flight started before 3rd May and continued until the third<br />
week of June. The flight of the adults that would start the<br />
second generation started in the third week of June and<br />
continued until the end of August. In 2009, at both<br />
altitude steps, the first flight started before 26 April and<br />
continued until the third week of June. The second flight<br />
again started in third week of June and continued until<br />
the end of second week of September. It was seen in<br />
2006 and 2009 that there were no differences between<br />
the first adult flight dates at two altitude steps. Average<br />
temperatures of January, February, March and April in<br />
2006 and 2009 at 1000 m were 3.3 and 4.1°C. Average<br />
temperatures of these months at 1500 m were 0.8 and<br />
1.57°C. In both years, average temperatures of April,<br />
according to altitude steps, were respectively 6.3 and<br />
3.8°C, and 5.2 and 2.7°C. The spring flight starts when<br />
the temperature exceeds about 20°C; in the north- this is<br />
in May/June, in southern areas in March/April (Vité et al.,<br />
1974; Sarıkaya, 2008). In this case, it was understood<br />
that the highest temperatures reached in late-April and<br />
early-May and their durations have been effective on<br />
these flights, rather than the monthly average<br />
temperatures. Temperature has a role of a limiting factor<br />
on the daily amounts of trapped beetles and captured<br />
beetle amounts depend on the daily duration of a<br />
temperature over a threshold that allows the beetles’<br />
flight, and on the daily highest temperature (Bakke,<br />
1968).<br />
In the assessment made according to the results of<br />
these captures; the flight times of the adults who flew last<br />
in the first flight in very little numbers, and of the adults<br />
who flew first in the second flight cannot be distinguished<br />
and thus; the ending dates of the first flight and the<br />
starting dates of the second flight coincide. It was<br />
detected that the first flight of this beetle begins in March,<br />
April and May in the forests of the region depending on<br />
the altitude, and consequently they laid eggs in April, May<br />
and June (Yuksel, 1998). The second flight that began in<br />
the third week of June continued until the end of August<br />
in 2006 and until the second week of September in 2009.<br />
Laying period of the second generation continues <strong>from</strong><br />
June to first week of August depending on the altitude.
16358 Afr. J. Biotechnol.<br />
According to these results, it can be understood that the<br />
adults trapped in late August in 2006 and early<br />
September in 2009 are the adults who would start the<br />
third generation observed in late August and early<br />
September according to lower and higher altitude steps<br />
(Yuksel, 1998).<br />
In 2006 and 2009, the completion of the first generation,<br />
which started in early May and last week of April,<br />
has taken approximately 50 to 60 days. The completion<br />
of the second generation between last week of June and<br />
last week of August was approximately 60 to 65 days. It<br />
is reported that the period of development <strong>from</strong> I.<br />
sexdentatus eggs laid in the first generation to the<br />
emergence of young adults is 40 days (Bonnemasion,<br />
1962). However, it is also reported that this period can<br />
increase to 78 days in nature, due to larval development<br />
phases being affected by climate conditions (Chararas,<br />
1962). A total of 40 days period of a generation of this<br />
beetle (Ozder, 1978) was detected as 60 days in Artvin<br />
(Ataman, 1967). Brood development <strong>from</strong> the start of<br />
gallery construction until the emergence of the new<br />
generation adults may take 2 to 3 weeks at a constant<br />
laboratory temperature of 27°C and 3 to 4 weeks at 22°C.<br />
No gallery construction and brood production succeeds at<br />
a constant temperature of 12°C. Overwintering is in the<br />
adult stage. The super-cooling point in hibernating adults<br />
is about -19°C, whereas in larvae it is only -9°C (Bakke,<br />
1968). At both altitude steps, the numbers of beetles<br />
trapped in the first flight are higher than those in the<br />
second flight. Average capture rates per trap in 2006 and<br />
2009 are respectively 2.74 and 2.17 times higher in the<br />
first flight periods than the second flight periods at the<br />
first altitude steps and respectively 6.68 and 1.62 times<br />
higher in the second altitude steps. Highest catches in<br />
the first flight happened between 15th May and 13th<br />
June. The orientations of the over-wintering adults to<br />
dead and felled trees in the second flight might have<br />
caused them to react less to the aggregation pheromone<br />
used. In this case, it can be more valid to take into<br />
account the capture amounts for sampling the populations<br />
in the monitoring programs. Although pheromone<br />
preparations in the traps are replaced before the second<br />
flight, the capture efficiency decrease in this flight period<br />
may require a research on the format of the chemical<br />
compound of the pheromone preparations to be used for<br />
this flight. Most of the pheromone traps caught the<br />
predator species T. formicarius as well as I. sexdentatus.<br />
In 2006, at Yesiltepe region, between 3rd May and 24th<br />
August, all lively 207 T. formicarius adults were taken<br />
<strong>from</strong> 31 of 40 traps. In each trap 1 T. formicarius adult<br />
was captured against an average of 43.92 I. sexdentatus<br />
adults. Additionally, in eight different controls, 1 to 6 T.<br />
formicarius adults were found in traps where no I.<br />
sexdentatus adults existed. T. formicarius is an abundant<br />
and voracious predator of bark beetles. It is attracted by<br />
bark beetle pheromones and host tree substances<br />
(Schroeder, 1997). Serez (1983) states that next to I.<br />
sexdentatus, parasitoid species are also caught<br />
by pheromone traps as well as predator species T.<br />
formicarius. Clerid beetles react to the same pheromones<br />
with their preys (Aukema et al., 2000). In the mechanical<br />
control against I. sexdentatus in Murgul in 1985, plenty of<br />
predators (Rhizophagus dispar, T. formicarius, Raphidia<br />
sp.) were found in beetle galleries (Alkan and Aksu,<br />
1990). The assessments based on fresh I. sexdentatus<br />
galleries in the Eastern Black Sea Region between 1992<br />
and 1996, T. formicarius, Cylister oblongum, Paraphloeus<br />
longulus, Rhizophagus depressus, Rhizophagus dispar<br />
and Hypophloeus unicolor were found to be the most<br />
effective predators (Yuksel 1998). In the experiments, it<br />
was observed that T. formicarius reduced T. piniperda’s<br />
(L.) (Coleoptera: Scolytidae) reproduction efficiency as<br />
much as 81 to 92% (Schroeder, 1996; Schroeder and<br />
Weslien, 1994). Therefore, having this many T.<br />
formicarius adults in the traps comes out as a disadvantage<br />
of pheromone traps. Furthermore, in 2006, 18<br />
I. typographus adults were captured by 5 traps containing<br />
Tryphreon Ipstyp aggregation pheromone. In 2009, I.<br />
typographus was not caught in any traps other than<br />
these, including the 13 traps containing the same pheromone<br />
preparation. Also, I. typographus was not found<br />
among the beetles captured by traps with I. sexdentatus<br />
preparations, where I. typographus had been caught<br />
previously. This situation may be an indication of the<br />
selectivity of the used pheromone preparations against<br />
species.<br />
The existence of I. typographus in Turkish oriental<br />
spruce forests has been known for 75 years (Berker,<br />
1936; Alkan, 1964). However, I. typographus has developed<br />
a very severe outbreak effective in a 15,000 ha<br />
area, in 1984 in Artvin (Alkan, 1985), the first infested<br />
region after the great scale outbreak first caused by D.<br />
micans in the spruce forests (Eroglu et al., 2005). The<br />
results of these captures by pheromone traps, which<br />
were made after the first detection of I. typographus in<br />
Trabzon-Macka spruce forests, were a second finding of<br />
this beetle in these forests. The second big outbreak of I.<br />
typographus occurred in the spruce stands of Giresun<br />
where D. micans infested after Artvin. These pheromone<br />
traps, which were mostly used to support pressuring of<br />
low-intensity populations and to gather data on<br />
population fluctuations, made it available to detect the<br />
existence of a very dangerous species, I. typographus, in<br />
the region, a species which stayed under such low<br />
densities that could not be detected with other methods<br />
for long.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16361-16366, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2094<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Distributional record of oak gall wasp (Hymenoptera:<br />
Cynipidae) species’ diversity in different regions of<br />
West-Azerbaijan, Iran<br />
Abbas Hosseinzadeh<br />
Department of Plant Medicine, Mahabad Branch, Islamic Azad University, Mahabad, Iran. E-mail:<br />
abas1354@yahoo.com. Tel: +98-9143435104. Fax: +98-442-2341005.<br />
Accepted 30 September, 2011<br />
Among gall–inducing insects, the majority of species are gall wasps (Hymenoptera: Cynipidae) that<br />
occur on oak trees (Quercus spp.) and produce galls on a certain part of the host. In this survey, oak<br />
gall wasp species were collected <strong>from</strong> the oak forests of Pardanan, Mirabad, Nalas, Sardasht, Hamran<br />
and Dar-ghabr in West-Azerbaijan province. The galls occurring on 50 cm sampled branches <strong>from</strong> four<br />
cardinal directions on each tree were counted multiple times throughout the season. Species richness<br />
of oak gall wasps was estimated for each region and also species diversity indices such as Simpson’s<br />
index, Shannon’s H', and Sorensen similarity quotient were calculated. In this survey, 40 oak gall wasps<br />
species were identified. Most galls were found on Quercus infectoria. All of the collected oak gall wasps<br />
belonged to seven genera: Andricus, Cynips, Neuroterus, Chilaspis, Pseudoneuroterus, Biorhiza and<br />
Aphelonyx. Among these species, 28 were related to the Andricus genus. The highest Simpson and<br />
Shannon indices were recorded in the Dar-ghabr and Pardanan regions in the fall, respectively. The<br />
highest Sorensen similarity was recorded in the spring's galls (sexual generation of oak gall wasps) and<br />
fall' galls (asexual generation) between Pardanan and Mirabad, and between Pardanan and Dar-ghabr<br />
regions, respectively. Differences in the local distribution of oak species, especially their subspecies,<br />
and the climate of the locations should be considered as main factors in oak gall wasp species diversity<br />
and the distribution of oak gall wasp species.<br />
Key words: Diversity, Similarity index, oak, gall wasps, forest.<br />
INTRODUCTION<br />
The Zagros Mountains in Iran are divided into the<br />
northern Zagros and southern Zagros. West-Azerbaijan<br />
province is located in the northern Zagros that is the main<br />
habitat of Quercus infectoria Oliv (Fatahi, 1994; Sabeti,<br />
1998; Saghebtalbi et al., 2004). This region is the focus<br />
of our study.<br />
Oak gall wasps select oak trees for gall formation on<br />
certain specialized organs (Rokas et al., 2003). About<br />
80% of wasps in the family Cynipidae produce diverse<br />
galls on oaks in terms of structure and form (Short and<br />
Castner, 1997; Liljeblad and Ronquist, 1998). Cynipid gall<br />
formation is an extremely complex interaction between<br />
cynipid gall wasps and the host plant, in which the wasp<br />
communicates with the host plant to redirect normal plant<br />
development to create galls that provide nutrients and<br />
protection for the developing larva (Nyman and Julkunen-<br />
Tiitto, 2000; Stone et al., 2002; Nylander, 2004). Sexual<br />
and asexual generations of oak gall wasps produce galls<br />
in the spring and early summer, and in the summer and<br />
autumn, respectively (Schonrogge et al., 1999). Biodiversity<br />
in each region should be a key health and<br />
environmental sustainability of the region (Schowalter,<br />
1996; Ashori and Kheradpir, 2009).<br />
Species diversity refers to the variety of species such<br />
as the number and relative abundance in a defined<br />
location. Species diversity can be measured in different<br />
ways, which can be classified into three groups of<br />
measurements: species richness, species abundance<br />
and taxonomic or phylogenetic diversity (Magurran,<br />
1988). There are four methods for evaluating species<br />
diversity and one of them is general index of diversity. A<br />
number of these indices that assess the relative<br />
frequency of the species are known as heterogeneity<br />
indexes. One indicator is the Shannon diversity index that
16362 Afr. J. Biotechnol.<br />
involves predicting an individual randomly <strong>from</strong> a set of S<br />
species with N selected individuals (Magurran, 1988,<br />
2004). This index is usually between 1.5 and 4.5 and the<br />
low level of this index represents the destruction of the<br />
environment (Schowalter, 1996). Another index is<br />
Simpson index that is based on abundance and<br />
evenness of species. This indicator is strongly related to<br />
dominant species, but has little sensitivity to species<br />
richness. This index value is between zero and one and<br />
the numbers close to one represent a high diversity<br />
(Simpson, 1949). Beta diversity is measured by important<br />
indicators such as Sorensen which are used to show the<br />
variation in trends in different localities (Schowalter,<br />
1996).<br />
Oak gall wasp species have high richness in the West-<br />
Azerbaijan province. Shojai (1980) reported 36 oak gall<br />
wasp species associated with oak Q. infectoria <strong>from</strong> Iran.<br />
Recent surveys were conducted about the cynipids fauna<br />
in Iran (Azizkhani, 2006; Tavakoli et al., 2008; Zargaran<br />
et al., 2008) and according to the latest results, and 82<br />
species of oak gall wasps have been introduced in the<br />
oak forests of Iran whereas 25 species are species that<br />
were reported in the world for the first time (Sadeghi et<br />
al., 2010). However, few studies have measured oak<br />
cynipid gall wasps diversity. Nazemi et al. (2008)<br />
reported species richness of oak gall wasps <strong>from</strong><br />
Kurdistan, Ilam and Kermanshah provinces of Iran. The<br />
oak gall wasps species diversity and their distribution in<br />
West-Azerbaijan province of Iran were carried out in<br />
2008-2009. The objective of this paper is to measure oak<br />
gall wasp diversity in multiple regions in West-Azerbaijan<br />
province.<br />
MATERIALS AND METHODS<br />
Sampling was performed in six regions of West-Azerbaijan<br />
province, Iran (Table 1), in 2008-2009 where cynipid galls were<br />
collected <strong>from</strong> oak forests. The climates were identified based on<br />
Dumarten's climate classification method. In our study area,<br />
sampling of cynipid galls took place in the mid and the end of<br />
spring, in the end of summer, and in the mid of fall to collect sexual<br />
and asexual galls occurring throughout the seasons. The optimal<br />
number of samples was determined according to Southwood and<br />
Henderson’s formula (2000) that is N=(t×s / D×m) 2 , where t is<br />
student’s T-test of standard statistical tables, D is the<br />
predetermined confidence limit for the estimation of the mean<br />
expressed as a decimal (0.2), m is preminaliry sampling mean and<br />
s is the standard deviation. The optimal number of samples was<br />
determined to be 30 trees per region. In total, we counted galls on<br />
360 trees in six sites (30 trees per site) in two years. All cynipid<br />
galls were counted on randomly selected four branches (each<br />
branch length was 50 cm) in four cardinal directions per tree. Also,<br />
the trees were selected randomly.<br />
We calculated species diversity <strong>using</strong> a variety of indices.<br />
Species diversity refers to the variety of species. Species richness<br />
was measured by counting the number of species in a defined area<br />
or site. We also measured the species abundance of each species.<br />
Measures of species diversity that simplify information on species<br />
richness and relative abundance into a single index are of extensive<br />
use (Magurran, 2004). We calculated species richness, Shannon’s<br />
H', Simpson’s index, and Sorensen similarity coefficient for each<br />
region in the spring and the fall collections separately <strong>using</strong><br />
Ecological Methodology 3.0 software (Krebs, 1998).<br />
Shannon-Weiner index: The computation of this diversity index<br />
uses the following formula:<br />
N o<br />
Shannon’s H' = - i 1<br />
p<br />
i<br />
* log<br />
p<br />
i<br />
Where, pi is the proportion of the total number of individuals, and No<br />
is the total number of species in a region.<br />
Simpson's index: The diversity index is calculated <strong>using</strong> the<br />
following formula:<br />
Simpson’s diversity indices = 1 -<br />
i<br />
N<br />
1<br />
ni<br />
( ni<br />
N(<br />
N<br />
1)<br />
1)<br />
Where, ni is the number of individuals of a particular species in a<br />
region, N is the total number of individuals of all species in a region.<br />
Similarity coefficients directly compare diversity of different sites<br />
and represent the number of species common to all areas.<br />
Sørensen similarity index is calculated <strong>from</strong> this formula as:<br />
Cs = 2a / (2a + b + c)<br />
Where, a is the number of species common to both sites, b is the<br />
number of species in site B, but not in A and c is the number of<br />
species in site A, but not in B.<br />
RESULTS<br />
In the six sites, 40 oak gall wasps species were collected<br />
and separated. These species were in the following<br />
genera: Andricus (28 species), Cynips (3 species),<br />
Neuroterus (4r species), Pesudoneuroterus (1 species),<br />
Chilaspis (1 species), Biorhiza (1 species) and Aphelonyx<br />
(2 species). The genus Andricus had the highest species<br />
richness. Also, gall wasp species richness was different<br />
among the regions. We collected 34 species <strong>from</strong><br />
Pardanan, 17 species <strong>from</strong> Mirabad, 15 species <strong>from</strong><br />
Nalas, 18 species <strong>from</strong> Hamran, 28 species <strong>from</strong> Darghabr<br />
and 17 species <strong>from</strong> Sardasht regions. The highest<br />
oak gall wasp species’ richness was found in the<br />
Pardanan region whereas Nalas region had the lowest<br />
species richness among the stations. The highest<br />
number of species of the genus Andricus was observed<br />
in the Pardanan region with 25 species and the lowest<br />
number of this genus was 8 species in Nalas region.<br />
Cynips was found in all of the regions and maximum<br />
number of 3 species belonging to Cynips was collected<br />
<strong>from</strong> Pardanan and Dar-ghabr regions. All species of the<br />
genus Neuroterus sp. (total 4 species), were obtained<br />
<strong>from</strong> the Nalas region. Meanwhile, only 1 species of the<br />
genus Neuroterus was observed in Mirabad region. The<br />
two genera Pseudoneuroterus and Chilaspis with 1<br />
species were found only in the Hamran region. Biorhiza<br />
pallida Olivier was obtained <strong>from</strong> Pardanan, Mirabad and<br />
Sardasht but Aphelonyx was observed in all of the study<br />
regions.
Table 1. Oak gall wasp species diversity in different regions of West-Azerbaijan, 2008-2009.<br />
Characteristic<br />
Host (Quercus)<br />
S, Spring; F, fall; *, not calculated (only one species was collected).<br />
Table 2. Sorensen similarity quotient (percent) in different regions of West-Azerbaijan.<br />
Hosseinzadeh 16363<br />
Region<br />
Pardanan Mirabad Hamran Nalas Dar-ghabr Sardasht<br />
Q. infectoria<br />
Q. brantii<br />
Q. libani<br />
Q. infectoria<br />
Q. brantii<br />
Region Pardanan Mirabad Nalas Hamran Dar-ghbr Sardasht<br />
Pardanan * 70.2(max) *62.2 * Not similar * Not similar *65.3<br />
Mirabad 56.2 *66 *41 * Not similar *61<br />
Nalas 53 45.2 *32(min) * Not similar *43.5<br />
Hamran 42 43.1 51.5 *57.6 * Not similar<br />
Dar-ghbr 87.3(max) 44 25.4(min) 55 * Not similar<br />
Sardasht 64.2 60.7 38 33.2 58<br />
(* means, for the spring's galls and other are the fall's galls).<br />
All species of oak gall wasps were gathered on 3<br />
species of oak Q. infectoria, Q. brantii and Q. libani and<br />
Table 3 presents the species-rich fauna of oak gall wasp<br />
species in West-Azerbaijan that occurred on Q. infectoria.<br />
The highest number of the spring' species was found on<br />
Q. brantii The lowest value of Simpson index (0.524)<br />
was found in the spring collected galls <strong>from</strong> Sardasht<br />
region and the highest value of this index (0.912) was<br />
recorded in the summer and fall galls in Dar-ghabr region<br />
(Table 1). The only collected species <strong>from</strong> Dar-ghabr in<br />
spring was Andricus cecconi Kieffer that produced the<br />
galls on Q. brantii. Thus, we could not calculate diversity<br />
indices for this region. The highest value of Shannon<br />
index, for summer-fall galls was recorded in Pardanan<br />
and Dar-ghabr regions and the high level of this index in<br />
these regions indicate that oak gall wasp species have<br />
the highest species richness and abundance in these<br />
regions. The lowest of Shannon index in spring's galls<br />
was observed in Sardasht (2.231) area<br />
Beta diversity, which indicates a change in species<br />
richness among regions, is measured <strong>using</strong> Sorensen<br />
Q. infectoria<br />
Q. brantii<br />
similarity quotient Of spring's galls, the highest similarity<br />
was between Mirabad and Pardanan and the lowest<br />
recorded index of similarity was between two regions,<br />
Hamran and Nalas (Table 2). Pair wise regions such as<br />
Hamran and Pardanan, Dar-ghabr and Pardanan, Darghabr<br />
and Mirabad, Dar-ghabr and Nalas, Sardasht and<br />
Hamran do not share any species; therefore, the similarity<br />
value was zero The highest and lowest similarity<br />
index of the summer galls was observed between Darghabr<br />
and Pardanan (87.3%), and between Nalas and<br />
Dar-ghabr (25.4%), respectively (Table 2).<br />
DISCUSSION<br />
Q. infectoria<br />
Q. brantii<br />
Q. infectoria<br />
Q. brantii<br />
Q. libani<br />
Q. infectoria<br />
Q. brantii<br />
Q. libani<br />
Latitude 36° 39′N 36° 15′N 36° 01′N 36° 35′N 36° 11′N 36° 25′N<br />
Longitude 45° 28′W 45° 22′W 45° 47′W 45° 11′W 45° 24′W 45° 48′W<br />
Climate Very humid and cold<br />
Very humid<br />
and cold<br />
Humid<br />
Mediterranean<br />
Very humid<br />
Mediterranean<br />
Humid<br />
Mediterranean<br />
Very humid<br />
Mediterranean<br />
Diversity index<br />
Simpson<br />
Shannon’s H’<br />
No. of species<br />
(Spring+Fall)<br />
S 0.721 0.811 0.612 0.659 * 0.524<br />
F 0.896 0.841 0.875 0.813 0.912 0.835<br />
S 2.019 2.322 1.662 1.756 * 1.231<br />
F 4.117 2.963 3.109 2.735 4.108 3.308<br />
34(4+30) 17(5+12) 18(3+15) 15(3+12) 28(1+27) 17(3+14)<br />
40 oak gall wasps species <strong>from</strong> studied areas in West-<br />
Azerbaijan province were identified to belong to seven<br />
major genera of the family Cynipidae. Andricus, Cynips<br />
and Aphelonyx with 65.7, 11.42 and 5.7 abundance,<br />
respectively were distributed in all of the areas. Andricus<br />
was found on the three oak species, Cynips on Q.
16364 Afr. J. Biotechnol.<br />
Table 3. Oak gall wasps species associated with oak trees in West-Azerbaijan, 2008-2009.<br />
Oak gall wasps species<br />
Spring gall<br />
Location of gall formation Type of generation Host<br />
1 A. burgundus (Giraud, 1859) Catkin Sexual Q. libani<br />
2 A. cecconii (Kieffer, 1901) Catkin Sexual Q. brantii<br />
3 A. curvator (Hartig, 1840) Leaf Sexual Q. infectoria<br />
4 A. grossulariae (Giraud, 1859) Catkin Sexual Q. brantii<br />
5 A. multiplicatus (Giraud, 1859) Leaf Sexual Q. brantii<br />
6 Biorhiza pallida (Olivier, 1791) Shoot Sexual Q. infectoria<br />
7 Chilaspis israeli (Sternlicht, 1968) Catkin Sexual Q. brantii<br />
8 Andricus pseudoaries (Melika et al. 2004) Shoot Asexual Q. infectoria<br />
9 A. askewi (Melika and Stone, 2001) Shoot Asexual Q. infectoria<br />
10 A. caliciformis (Giraud, 1859) Shoot Asexual Q. infectoria<br />
11 A. caputmedusae (Hartig, 1843) Shoot Asexual Q. infectoria<br />
12 A. conglomeratus (Giraud, 1859) Shoot Asexual Q. infectoria<br />
13 A. coriarius (Hartig, 1843) Shoot Asexual Q. infectoria<br />
14 A. foecundatrix (Hartig, 1840) Shoot Asexual Q. infectoria<br />
15 A. galeatus (Giraud, 1859) Shoot Asexual Q. infectoria<br />
16 A. gemmeus (Giraud, 1859) Shoot Asexual Q. infectoria<br />
17 A. hystrix (Trotter, 1899) Shoot Asexual Q. infectoria<br />
18 A. kollari (Hartig, 1843) Shoot Asexual Q. infectoria<br />
19 A. lucidus (Hartig, 1843) Shoot Asexual Q. infectoria<br />
20 A. mediterraneae (Trotter, 1901) Shoot Asexual Q. infectoria<br />
21 A. megalucidus (Melika et al. 2003) Shoot Asexual Q. infectoria<br />
22 A. panteli (Kieffer, 1901) Branch Asexual Q. infectoria<br />
23 A. polycerus (Giraud, 1859) Branch Asexual Q. infectoria<br />
24 A. quercuscalicis (Borgsdorf, 1783) Fruit Asexual Q. infectoria<br />
25 A. quercustozae (Bosc, 1792) Shoot Asexual Q. infectoria<br />
26 A. seckendorffi (Wachtl, 1879) Shoot Asexual Q. infectoria<br />
27 A. sternlichtii (Bellido and Melika, 2003) Shoot Asexual Q. infectoria<br />
28 A. theophrastea (Trotter, 1901) Shoot Asexual Q. infectoria<br />
29 A. tomentosus (Trotter, 1901) Shoot Asexual Q. infectoria<br />
30 A. megatruncicolus Giraud Shoot Asexual Q. infectoria<br />
31 Aphelonyx cerricola (Giraud, 1859) Shoot Asexual Q. brantii<br />
32 Aphelonyx persica (Melika et al. 2004) Shoot Asexual Q. brantii<br />
33 Cynips cornifex (Hartig, 1843)<br />
Leaf Asexual Q. infectoria<br />
34 C. quercus (Fourcroy, 1785) Leaf Asexual Q. infectoria<br />
35 C. quercusfolii (Linnaeus, 1758) Leaf Asexual Q. infectoria<br />
36 Neuroterus saliens (Kollar, 1857) Leaf Asexual Q. brantii<br />
37 N. lanoginosus (Giraud, 1859) Leaf Asexual Q. brantii<br />
38 N. numismalis (Geoffroy, 1785)<br />
Leaf Asexual Q. infectoria<br />
39 N. quercus-baccarum (Linnaeus, 1758) Leaf Asexual Q. infectoria<br />
40 Pseudoneuroterus macropterus (Hartig, 1843) Shoot Asexual Q. brantii<br />
infectoria and Q. brantii, and Aphelonyx only on Q.<br />
brantii. Considering the different studied climatic regions,<br />
at the first stage it did not appear that these species’<br />
distribution will be affected by climate change. Q.<br />
infectoria was the most widely distributed oak in all<br />
regions, and subsequently the highest number of galls<br />
(30 galls) was recorded on this oak species It was host<br />
to the highest gall species richness on Q. infectoria.<br />
Meanwhile, the numbers of 9 and 1 species of gall wasps<br />
were present on Q. brantii and Q. libani, respectively.<br />
Similarly, Azizkhani et al. (2007) found that oak gall wasp<br />
fauna of the Lorestan province in Iran was higher on Q.<br />
brantii compared to Q. infectoria Pseudoneuroterus and<br />
Chilaspis species produced galls on Q. brantii and only<br />
were collected <strong>from</strong> the Hamran region. Given that Q.<br />
brantii was present in both areas and that Hamran and
Dar-ghabr regions have similar climates, which appear to<br />
be of other factors involved in the distribution of these 2<br />
species and very possibly the presence of different<br />
subspecies of oak trees will be investigated as the first<br />
important factor in this relationship. Among 40 of oak gall<br />
wasps species, 7 spring galls and 33 summer-fall galls<br />
were identified. Most of the spring's galls (4 galls) were<br />
created by the sexual generation of oak gall wasp<br />
species on Q. brantii. In contrast, most summer-fall galls<br />
(28 species) were made by asexual generation of oak<br />
gall wasps on Q. infectoria. Only one species of oak gall<br />
wasps in the spring is gall-maker on Q. libani. In fact,<br />
these oak species have the lowest richness of oak gall<br />
wasps. Based on climatic similarity in the Pardanan and<br />
Mirabad regions and also the presence of Q. brantii as a<br />
dominant species, the highest similarity was found in the<br />
spring between these two regions. The lowest similarity<br />
was registered between Hamran and Nalas regions that<br />
contain similar oak species, and different climates. It<br />
seems that presence of oak gall wasp species was<br />
affected by climate and or oak species and also<br />
subspecies. Due to a lower species richness in spring (7<br />
species) and lack of equal distribution in various regions,<br />
the rate similarity index was zero in many areas that<br />
showed dissimilarity in the desired areas (Table 2). Stone<br />
et al. (2002) suggests geographical differences in oak<br />
gall wasp fauna is related to oak distribution patterns in<br />
different regions The highest similarity of the asexual<br />
generation of oak gall wasp was observed between the<br />
Pardanan and Dar-ghabr regions where the plant<br />
covering is the same but climates are different <strong>from</strong> each<br />
other. Oak gall wasp species richness might be expected<br />
to increase due to the richness of host plant species<br />
(Starzomski et al., 2008) Species richness of oak gall<br />
wasps in Mexico was reviewed and the results showed<br />
that species richness between insects and host plants<br />
have positive correlations (Cuevas-Reyes et al., 2004).<br />
Galling insects may preferentially select those plant<br />
species with characteristics such as chemical toxicity,<br />
mechanical strength, or longevity that can be manipulated<br />
to benefit the galler (Genimar-reboucas et al.,<br />
2003). Gall traits (such as structure, location, and<br />
phenology) may play important roles in community<br />
diversity, but there is little empirical evidence of this<br />
(Hayward and stone, 2005). The lowest similarity was<br />
observed between Dar-ghabr and Nalas in summer.<br />
Probably the presence of oak species and their<br />
subspecies was the cause of this difference and led to<br />
different richness of oak gall wasp and a minimum<br />
similarity between these two regions has been recorded<br />
Blanche (2000) in a study concluded that the ambient<br />
temperature and rainfall does not have an effect on<br />
distribution of galling insects and we cannot conclude that<br />
the species richness in warm and dry regions is higher<br />
than the cold and humid regions. But, some results in<br />
relation to galling-insect distribution showed that the<br />
effect of humidity on the distribution of these insects is<br />
Hosseinzadeh 16365<br />
minor and leads to the lower species richness (Fernandes<br />
and Price, 1992)<br />
Price et al. (2004) studied the oak gall wasps demographic<br />
population changes and also the relationship<br />
between host plant and gall wasps species richness. Gall<br />
wasps are specialist and because all of the galling<br />
insects are usually host-specific, generation and maintenance<br />
of gall wasp species richness is often related to<br />
plant species richness (Wright and Samways, 1996;<br />
Abrahamson et al., 1998; Price, 2005).<br />
ACKNOWLEDGMENTS<br />
I dedicate my cordial thanks to the head of Islamic Azad<br />
University, Mahabad Branch, for their financial and<br />
scientific supports. I also thank Dr. Zargaran for<br />
assistance and analyzing of the data.<br />
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ifas. ufl. edu. p. 22.<br />
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between regional and local species richness: A test of saturation<br />
theory. Ecology, 89(7): 1921-1930.<br />
Stone GN, Schonrogge K, Atkinson R, Bellido D, Pujade-Villar J (2002).<br />
The population biology of oak gall wasps (Hymenoptera:Cynipidae).<br />
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Tavakoli M, Melika G, Sedeghi S, Penzes Zs, Assareh M, Atkinson R,<br />
Betchold M, Miko I, Zargaran MR, Aligholizadeh D, Barimani H, Bihari<br />
P, Pirozi F, Fulop D, Somogyi K, Challis R, Preuss S, Nichollas J,<br />
Stone GN (2008). New species of Cynipid gall wasps <strong>from</strong> Iran and<br />
Turkey (Hymenoptera: Cynipini). Zootaxa, 1699: 1-64.<br />
Wright MG, Samways MJ (1996). Insect species richness tracking plant<br />
species richness in a diverse flora: gall-insects in the Cape floristic<br />
region. Oecologia, 115: 427-433.<br />
Zargaran MR, Sadeghi SE, Hanifeh S (2008). Identification of oak gall<br />
wasps and their parasitoids in west Azerbaijan province of Iran.<br />
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(in Persian).
African Journal of Biotechnology Vol. 10(72), pp. 16367-16373, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1101<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Phosphine resistance in Rhyzopertha dominica<br />
(Fabricius) (Coleoptera: Bostrichidae) <strong>from</strong> different<br />
geographical populations in China<br />
XuHong Song, PingPing Wang and HongYu Zhang*<br />
State Key Laboratory of Agricultural Microbiology, Institute of Urban and Horticultural Pests, College of Plant Science<br />
and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People’s Republic of China.<br />
Accepted 25 July, 2011<br />
This study was carried out to determine the level of phosphine resistance in 16 Rhyzopertha dominica<br />
(Fabricius) populations that were collected <strong>from</strong> ten provinces and one municipality in China following<br />
the Food and Agriculture Organization’s (FAO) standard method. Results showed that the 50% lethal<br />
concentration (LC50) of phosphine to these R. dominica populations ranged <strong>from</strong> 0.017 to 4.272 mg/L. Of<br />
the 16 populations, 5 were of low resistance, 6 were moderately resistant, and 5 were high resistant.<br />
The instantaneous rate of population increase (ri) was correlated with phosphine resistance followed by<br />
the Exponential model (y = 0.037e -0.005X , R 2 = 0.937). The relationship between the types of grain storage<br />
and the phosphine resistance of R. dominica population were also discussed.<br />
Key words: Phosphine resistance, instantaneous rate of population increase, Rhyzopertha dominica, China.<br />
INTRODUCTION<br />
The lesser grain borer, Rhyzopertha dominica (Fabricius)<br />
(Coleoptera: Bostrichidae), is a widely studied stored-product<br />
insects originating <strong>from</strong> tropical areas, but actually<br />
distributed all over the world. Both larvae and adults are<br />
<strong>internal</strong> feeders, ca<strong>using</strong> serious damages to grains,<br />
such as rice, maize, wheat and other stored commodities.<br />
The insect can develop and maintain a high rate of<br />
oviposition in dry grains, and can even survive in grains<br />
with as low as 8% moisture content (Birch, 1945a, b).<br />
Existing projections indicate that future population and<br />
economic growth will require a doubling of current food<br />
production, including an increase <strong>from</strong> 2 billion to 4 billion<br />
tons of grains annually (Tubiello et al., 2007). However,<br />
the activities of insects and mites could frustrate these<br />
efforts. Arthropod pests are responsible for deterioration<br />
of stored food and can cause yearly losses estimated at<br />
about 30% of 1800 million tons of stored grain (Haubruge<br />
et al., 1997). In China, 60% grain yield is usually stored<br />
for further use, and as part of food security grain storage;<br />
*Corresponding author. E-mail: hongyu.zhang@ mail.hzau. edu.<br />
cn Tel: 86-27-87281156.<br />
during which about 6-12% grain loss as a result of pest<br />
damage is recorded in rural areas (Lan, 2006).<br />
The main method for controlling stored-product insects<br />
in many countries, including China, is through fumigation<br />
with phosphine and methyl bromide. Use of methyl<br />
bromide is associated with depletion of the ozone layer<br />
and bromine residues in the soil (WMO, 1995; Ristaino<br />
and Thomas, 1998). Therefore, there is increased<br />
reliance on phosphine to control stored-product insects<br />
(Lorini et al., 2007). Phosphine gas has been used worldwide<br />
for more than half a century as a useful fumigant for<br />
the control of stored-product insects (Price and Mills,<br />
1988; Chaudhry, 2000), and for the protection of stored<br />
grains and other commodities <strong>from</strong> pest attack.<br />
However, widespread resistance to phosphine has<br />
emerged in several species of stored-product insects in<br />
many countries in which phosphine control failure has<br />
been detected (Champ and Dyte, 1977; Chaudhry, 2000;<br />
Collins et al., 2005; Lorini and Collins, 2006; Pimentel et<br />
al., 2007, 2010; Savoldelli and Süss, 2008; Collins,<br />
2009). Several strong phosphine-resistant stored-product<br />
insects have been found in Morocco (Benhalima et al.,<br />
2004), Brazil (Ansell et al., 1990; Mills and Athie, 2001;<br />
Athie and Mills, 2005), Vietnam (Bui, 1999), China (Yan
16368 Afr. J. Biotechnol.<br />
Table 1. Origin of Chinese populations of R. dominica.<br />
Population City Province Grain category Storage facility Time<br />
ZC Zhucheng Shandong Wheat Wheat processing industry September, 2007<br />
XC Xuchang He’nan Wheat Local storage August, 2007<br />
HD Handan Hebei Wheat National storage September, 2008<br />
XN Changsha Hu’nan Rice Rice processing industry August, 2008<br />
ZG Hefei Anhui Rice Rice processing industry August, 2008<br />
GA Gaoan Jiangxi Rice Local storage August, 2008<br />
HP Wuhan Hubei Rice National storage July, 2008<br />
AL Anlu Hubei Rice National storage September, 2007<br />
SY Shayang Hubei Rice National storage May, 2007<br />
XF Xiangfan Hubei Rice National storage May, 2007<br />
BN Chongqing Chongqing Rice Rice processing industry September, 2007<br />
BB Chongqing Chongqing Rice National storage September, 2007<br />
LZ Luzhou Sichuan Rice National storage October, 2008<br />
GY Guiyang Guizhou Rice National storage August, 2008<br />
YC Yangchun Guangdong Rice Local storage May, 2007<br />
JM jiangmen Guangdong Rice Local storage August, 2007<br />
et al., 2004; Cao, 2006), Australia (Collins, 1998;<br />
Bengston et al, 1999; Valmas and Ebert, 2006 ) and<br />
Pakistan (Alam et al., 1999; Ahmedani et al., 2006,<br />
2007).<br />
Resistance to phosphine has been reported in several<br />
economical important insect species, including R.<br />
dominica (F.), Sitophilus oryzae (Linnaeus), Sitophilus<br />
zeamais (Motschulsky), Tribolium castaneum (Herbst)<br />
Trogoderma granarium Evert, Oryzaephilus surinamensis<br />
(L.), Cryptolestes ferrugineus (Stephens), Liposcelis<br />
bostrychophila (Badonnel), L. entomophila (Enderlein)<br />
and L. decolor (Pearman) (Champ and Dyte, 1977; Borah<br />
and Chahal, 1979; Benhalima, 1988; Leong and Ho,<br />
1994; Lorini and Galley, 1999; Nayak et al., 2002, 2003;<br />
Cao et al., 2003; Athie and Mills, 2005; Pimentel et al.,<br />
2010; Nayak and Collins, 2008; Collins, 2009).<br />
Resistance in insects is often linked (among other<br />
factors) to various fitness traits, such as intrinsic rates of<br />
increase (White and Bell, 1990), the change of rate of<br />
population growth (Fragoso et al., 2005; Haubruge and<br />
Arnaud, 2001), fecundity and male reproductive competition<br />
(Arnaud and Haubruge, 2002). Fragoso et al.<br />
(2005) detected that insect population that are resistant<br />
to pyrethroid showed a reduced rate of population growth<br />
compared with other populations. However, Haubruge<br />
and Arnaud (2001) suggested that resistant population<br />
did not always involve decreased fitness. Therefore, the<br />
growth rate of insect populations was fundamental to<br />
insecticide resistance management.<br />
The aim of this study was to detect the phosphineresistance<br />
status of R. dominica populations in China.<br />
Understanding the level of resistance to phosphine and<br />
assessing the instantaneous rate of population increase<br />
(ri) would be very useful toward the development of an<br />
appropriate strategy for resistance management of this<br />
pest.<br />
MATERIALS AND METHODS<br />
16 populations of R. dominica were collected <strong>from</strong> ten provinces<br />
and one municipality in China between May, 2007 and October,<br />
2008 (Table 1). Geographical distribution of R. dominica<br />
populations sampled in China includes: Shandong, He’nan, Hebei,<br />
Hubei, Guangdong, Sichuan, Jiangxi, Anhui, Guizhou, Hu’nan<br />
provinces and Chongqing municipality. The cities <strong>from</strong> which<br />
samples were obtained are as follows; Zhucheng (ZC), Xuchang<br />
(XC), Handan (HD), Changsha (XN), Hefei (ZG), Gaoan (GA),<br />
Wuhan (HP), Anlu (AL), Shayang (SY), Xiangfan (XF), Chongqing<br />
(BN), Chongqing (BB), Luzhou (LZ), Guiyang (GY), Yangchun (YC)<br />
and Jiangmen (JM). The sparseness of these locations with their<br />
latitude and longitude coordinates, and the type of grain storage<br />
facilities are shown in Figure 1 and Table 1, respectively. BB, LZ,<br />
HD, GY, HP, AL, XF and SY populations were collected <strong>from</strong><br />
national storage facilities. ZC population came <strong>from</strong> wheat<br />
processing industry. BN, XN and ZG populations were collected<br />
<strong>from</strong> rice processing industry, while XC, YC, JM and GA populations<br />
were <strong>from</strong> local storage.<br />
The 16 populations and standard susceptible population of R.<br />
dominica studied were then reared on cracked wheat grains (13 ±<br />
1% moisture content) free of insecticide residues. The temperature<br />
in the rearing chamber was maintained at 30 ± 1°C and 75 ± 5%<br />
relative humidity. Non-sexed adults of R. dominica (14 to 21-day<br />
old) were used in phosphine resistance assays.<br />
Phosphine bioassays<br />
Fumigation of adult R. dominica was based on the FAO standard<br />
method (FAO, 1975) and it took place in a controlled temperature<br />
and relative humidity chamber (25°C, 70% rh). Phosphine was<br />
obtained by a reaction of Zinc phosphide (Ji’ning City Yimin<br />
Chemical Plant, China) in acidified water (10% sulfuric acid). The<br />
concentration of the phosphine was always tested before the<br />
bioassays. Depending on the mortality at these concentrations,<br />
higher or lower concentration (at least 5 to 8 concentration) was
Figure 1. Distribution of R. dominica collection sites across China.<br />
used to estimate the concentration-mortality curves after preliminary<br />
tests. Test adults were held in a perforated metallic tube closed with<br />
rubber stoppers and secured with adhesive tape inside modified<br />
gas desiccators. Gas was injected with micro-syringes through a<br />
septum in the lid of each desiccator. After 20 h of fumigation, test<br />
insects were transferred into glass tubes with cracked wheat, and<br />
were kept for 14 days (25°C, 70% rh). The mortality was then<br />
recorded. Each treatment was repeated three times.<br />
Instantaneous rate of population growth (ri)<br />
The instantaneous rate of increase (ri) test was carried out in 250<br />
ml glass conical flask with 40 g cracked wheat. Each conical flask<br />
was infested with 20 non-sexed R. dominica adults (14 to 21- day<br />
old) and maintained at 30 ± 1°C, 75 ± 5% rh. Then, the conical flask<br />
was covered with a ventilated cloth. The number of surviving adults<br />
was counted after 60 days, and the instantaneous rate of increase<br />
in each population was calculated as follows:<br />
ri = ㏑ (Nf / N0) / Δt<br />
Where, Nf is the final number of observed live adults; N0 is the initial<br />
number of R. dominica and Δt is the duration of the experiment<br />
(Walthall and Stark, 1997; Pimentel et al., 2007).<br />
Three replicates were used for each population in this test.<br />
Data analysis<br />
The concentration-mortality data were analyzed <strong>using</strong> probit<br />
program software, where probit-transformed mortality was<br />
regressed against Log10-transformed dose (SPSS16.0). The<br />
instantaneous rate of population increase (ri) were subjected to<br />
analysis of variance (P 0.05)<br />
<strong>from</strong> the bioassay observed values (Table 2). The logit<br />
model was therefore appropriate to be used for concentration-mortality<br />
analysis. The concentration-mortality<br />
curves indicated that 5 populations of R. dominica (ZC,<br />
GY, XN, BN and ZG) exhibited low resistant to phosphine<br />
(RF value < 10-fold), while 6 populations (LZ, BB, HP,<br />
HD, JM and XF) were mo-derately resistant (10-fold < RF<br />
value < 100-fold). AL, SY, YC GA and XC populations<br />
showed high resistance (>100-fold) (Table 2).
16370 Afr. J. Biotechnol.<br />
Table 2. Relative toxicity to phosphine of sixteen populations of R. dominica.<br />
Population Slope ± SE a LC50 (95% CL) (mg/L) LC95 (95% CL) (mg/L) X 2 P RF b<br />
SCS c 2.518±0.222 0.007(0.006-0.009) 0.033(0.022-0.064) 9.687 0.085 -----<br />
ZC 1.893±0.165 0.017(0.012-0.023) 0.124(0.076-0.293) 9.837 0.080 2.429<br />
GY 1.464±0.110 0.030(0.020-0.042) 0.395(0.229-0.935) 9.024 0.108 4.286<br />
XN 1.090±0.129 0.033(0.021-0.048) 1.068(0.584-2.661) 0.965 0.810 4.714<br />
BN 2.573±0.202 0.037(0.029-0.047) 0.162(0.109-0.321) 7.154 0.128 5.286<br />
ZG 1.020±0.091 0.066(0.046-0.093) 2.723(1.487-6.203) 6.291 0.178 9.429<br />
LZ 0.975±0.129 0.120(0.059-0.228) 5.870(1.671-131.673) 8.658 0.124 17.143<br />
BB 1.044±0.085 0.155(0.107-0.215) 5.816(3.583-10.901) 5.701 0.223 22.143<br />
HP 0.932±0.108 0.282(0.165-0.419) 16.414(8.944-40.849) 4.750 0.314 40.286<br />
HD 1.653±0.182 0.302(0.137-0.518) 2.992(1.359-25.555) 6.344 0.096 43.143<br />
JM 1.536±0.112 0.327(0.269-0.397) 3.850(2.703-6.071) 6.198 0.287 46.714<br />
XF 1.551±0.239 0.338(0.208-0.467) 3.882(2.459-8.489) 5.091 0.165 48.286<br />
AL 1.169±0.100 0.903(0.606-1.389) 23.040(10.06-94.899) 13.620 0.058 129.000<br />
SY 1.397±0.149 0.913(0.757-1.125) 13.744(8.030-30.818) 3.530 0.473 130.429<br />
YC 1.453±0.282 1.349(0.859-1.993) 18.293(8.697-87.505) 5.523 0.238 192.714<br />
GA 2.276±0.208 1.826(1.565-2.114) 9.640(7.340-14.039) 2.894 0.408 260.857<br />
XC 6.650±0.897 4.272 (3.876-4.595) 7.550(6.795-8.918) 3.382 0.336 610.286<br />
a SEM = Standard error of mean, b RF = resistance factor (LC50 of resistant population/ LC50 of sensitive population, c = standard<br />
susceptible population.<br />
Majority of the slopes of the concentration-mortality<br />
curves were similar among the populations of R.<br />
dominica, except for BN, GA and XC populations. Among<br />
these three populations, BN population showed lowresistance,<br />
while GA and XC populations had high-resistance.<br />
These results indicate that the resistance of R.<br />
dominica populations was not associated with the slopes<br />
of the concentration-mortality curves. Furthermore, response<br />
curves <strong>from</strong> all populations except XC had low<br />
slope values, indicating that there was high heterogeneity<br />
in these populations.<br />
The populations were ranked in order of RF values; the<br />
populations <strong>from</strong> processing facilities cluster near the top,<br />
then the national storage populations and the populations<br />
<strong>from</strong> local storage. The average RF for processing facileties,<br />
national storages and local storage were 5.465, 61.<br />
490 and 277.643, respectively. This result indicates that<br />
resistance is connected with the type of grain storage.<br />
Instantaneous rate of population increase (ri)<br />
The instantaneous rate of population increase (ri) was<br />
used to assess the fitness disadvantage associated with<br />
phosphine in the absence of the fumigant. There was<br />
significant variation in ri among populations of R.<br />
dominica (F15, 32 = 64.423, P < 0.001). The ri curve was<br />
fitted <strong>using</strong> exponential regression curve (y = 0.037e -<br />
0.005X , R 2 = 0.937; F1, 14 = 209.488, P < 0.001).<br />
R. dominica populations with high ri showed low<br />
resistance factor (RF for LC50), while low ri presented<br />
high RF value (Figure 2). This indicated that the<br />
existence of fitness costs (ri) was connected with the<br />
resistance of phosphine in R. dominica population.<br />
DISCUSSION<br />
A global survey undertaken by the FAO in 1972/1973<br />
showed that about 10% of investigated populations<br />
contained phosphine resistant insects, including a R.<br />
dominica population collected <strong>from</strong> Keelung of Taipei,<br />
China (Champ and Dyte, 1976). The earliest phosphine<br />
resistance in Chinese populations of R. dominica was<br />
reported by the Guangdong Institute of Cereal Science<br />
Research in 1976 (Zeng, 1996). In this study, all 16<br />
populations of R. dominica were identified as phosphine<br />
resistant strains. Of the 16 populations, 31.25% were low<br />
resistant, 37.5% were moderately resistant, while 31.25%<br />
were highly resistant. XC population showed the highest<br />
resistance to phosphine, and the RF value was 610.286.<br />
The results therefore reveal the seriousness of the<br />
problems of phosphine resistance in China.<br />
Response curves with low slopes are correlated with<br />
high levels of heterogeneity, suggesting a high variation<br />
in response to phosphine in treated populations (Lorini et<br />
al., 2007). The low slope of the response curves for all<br />
but the XC population indicated that there was high heterogeneity<br />
in the tested populations and that there is high<br />
variation in response to phosphine in these samples.<br />
Some populations of R. dominica (HP, AL, SY and YC)<br />
showed high LC95 value (Table 2), revealing that these
Figure 2. The instantaneous rate of population increase ( ri) for R. domininca as a function of<br />
resistance factor (RF value for LC50). Curve was fitted <strong>using</strong> Exponential regression curve (y = 0.037e -<br />
0.005X , R 2 = 0.937; F1,14 = 209.488, P
16372 Afr. J. Biotechnol.<br />
samples. We would like to thank Zhang-Hong Shi for his<br />
advice on data analysis. This work was partially<br />
supported by China Postdoctoral Science Foundation,<br />
China National Science and Technology Project of the<br />
11th Five-Year Plan (2006BAD02A18-03 and<br />
2006BAI09B04-06) and Hubei Key Project of Science<br />
and Technology.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16374-16378, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.1684<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Contribution to the knowledge of Gnaphosidae<br />
(Arachnida: Araneae) in Turkey<br />
Adile Akpınar, Ismail Varol*, Faruk Kutbay and Bilal Taşdemır<br />
Faculty of Arts and Sciences, University of Gaziantep, Gaziantep, 27310, Turkey.<br />
Accepted 30 September, 2011<br />
In this study, some additions were made on arachnofauna in Turkey. We recorded Drassodex Murphy,<br />
2007 genus and six gnaphosid species: Drassodex hypocrita (Simon, 1878), Drassodes cupreus<br />
(Blackwall, 1834), Echemus angustifrons (Westring, 1861), Setaphis gomerae (Schmidt, 1981),<br />
Trachyzelotes fuscipes (L. Koch, 1866) and Zelotes hermani (Chyzer, 1897), for the first time in Turkey.<br />
Also, we colleced specimens <strong>from</strong> Kahramanmaraş and Adiyaman provinces, between April 2007 and<br />
May 2009. The characteristic features, distributions, ecologies, genital structures, identification keys of<br />
these species were described according to literature.<br />
Key words: Araneae, Cithaeronidae, Cithaeron praedonicus, Turkey, Middle East.<br />
INTRODUCTION<br />
Gnaphosid spiders have been recognized by their<br />
abdomen, eyes and spinnerets. The abdomen varies in<br />
colour <strong>from</strong> greyish to black and is elongated in shape.<br />
The posterior median eyes are oval or elliptical in shape.<br />
Spinnerets are cylindrical in shape, the anterior pairs are<br />
widely separated and usually project <strong>from</strong> the posterior<br />
end of the abdomen. They are nocturnal hunters.<br />
Gnaphosidae is one of the familiar families of spiders in<br />
Turkey. There are many researchers carrying out detailed<br />
study on this family, their systematics, faunistics and<br />
ecologic features. It is one of the biggest spider families.<br />
In this family, 2123 species of Gnaphosidae (Pocock,<br />
1898c) and 117 genera have been described to date<br />
(Platnick, 2011, version: 12). Some of the researchers<br />
that studied gnaphosid species are: Varol (1996, 2001),<br />
Bayram (2007), Topçu et al. (2005), Varol et al. (2006),<br />
Ozdemir et al. (2006), (Seyyar and Demir, 2010, Seyyar<br />
et al. 2008, Seyyar, 2009) and Kovblyuk et al. (2009).<br />
Particularly, Seyyar et al. (2008) have a checklist of<br />
Gnaphosidae <strong>from</strong> Turkey, which have 107 species<br />
belonging to 26 genera. This paper presents the first<br />
record of genus Drassodex Murphy, 2007 and six<br />
*Corresponding author. E-mail: varol@gantep.edu.tr.<br />
Abbreviations: AM, Anterior median eye; AL, anterior lateral<br />
eye; PM, posterior median eye; PL, posterior lateral eye; P,<br />
pedipalp; C, clypeus; LE, largest eyes; SE, smallest eyes; rt,<br />
retrolateral; v, ventral.<br />
gnaphosid species <strong>from</strong> Turkey.<br />
MATERIALS AND METHODS<br />
Specimens were collected <strong>from</strong> Adiyaman and Kahramanmaraş<br />
provinces in Turkey between years 2007 and 2009. They were<br />
primarily gathered on manual searching and were preserved in 70%<br />
ethanol before they were identified. Afterwards, drawings were<br />
made under a SZX12 Olympus stereomicroscope.<br />
In the diagnosis of the spider species collected <strong>from</strong> the research<br />
area, the following literature by Simon (1932), Nentwig et al. (2011),<br />
Muster and Thaler (2003), Logunov (1996) and Roberts (1995)<br />
were used, and the studied specimens were deposited in the<br />
Arachnology Museum of the University of Gaziantep. However, all<br />
measurements were done in millimetres.<br />
RESULTS<br />
Drassodex Murphy, 2007<br />
These species are small spiders. The prosoma is light<br />
brown, while the opisthosoma is lighter brown or grey and<br />
it is mottled. The eyes distinctively stand in a darker area.<br />
One type of these species is Drassodes hypocrita<br />
(Simon, 1878). However, this genus was first recorded in<br />
Turkey (Seyyar et al., 2008).<br />
Drassodex hypocrita (Simon, 1878) (Figure 2a)<br />
Material: The material used were obtained <strong>from</strong> Büyük<br />
Çamurlu village (37° 54' N, 36° 23' E), 1461 m,<br />
31.07.2008 (1♀) in Göksun district, Kahramanmaraş
province, Turkey. The spider was found in an open space<br />
in the forest, while a locality of the specimen was found<br />
close to the stream around Abies trees.<br />
Female: The total length for females is 5.29. Its carapace<br />
is 2.05 long and 1.70 wide. Its abdomen has a length of<br />
3.24 and a width of 2.35. However, the lengths of the<br />
female’s legs and pedipalp are: I-[(1.31 + 0.61 + 0.71 +<br />
0.67+0.56) 3.86], II-[(1.38 + 0.46 + 0.70 + 0.57+0.76)<br />
3.87], III-[(1.20 + 0.44 + 0.78 + 0.81 + 0.76) 3.99], IV-<br />
[(1.29 + 0.52 + 0.93 + 0.81 + 0.78) 4.33], P-[(0.56 + 0.29<br />
+ 0.33 + 0.51) 1.69].<br />
Description: The prosoma, especially, is light brown to<br />
brown, but the distal leg segments and the eye regions<br />
are darker. However, the opisthosoma is light brown,<br />
while the vulva is convoluted with entrance ducts<br />
(Nentwig et al., 2011).<br />
General distributions: They are generally distributed in<br />
Russia and Europe (Platnick, 2011).<br />
Drassodes cupreus (Blackwall, 1834) (Figure 1a and<br />
b)<br />
Material: The material used were obtained <strong>from</strong><br />
Çuhadarli village ( 37° 34' N, 36° 28' E), 1275 m,<br />
02.05.2009 (1♂) in Andirin district; Yarbaşi village (37°<br />
28' N , 37° 13' E), 852 m, 18.05.2008 (1♂) in Pazarcik<br />
district; and Alanli village (37° 32' N, 36° 29' E), 637 m,<br />
02.05.2009 (1♂) in Andirin district, Kahramanmaraş<br />
province, Turkey. The spiders were found under stones.<br />
The first specimen was found close to the stream of<br />
Karasu, the second specimen was found close to<br />
Kartalkaya dam and its river, and the last specimen was<br />
found close to the Karasu stream, as well.<br />
Male: The total length of the male species is 8.11. Its<br />
carapace is 3.77 in length and 2.75 in width. Its abdomen<br />
has a length of 4.34 and a width of 2.46. The lengths of<br />
the species’ legs and pedipalp are: I- [(3.21 + 1.63 + 3.34<br />
+ 2.53 + 2.12) 12.83], II- [(3.35 + 1.58 + 3.03 + 2.64 +<br />
2.09) 12.69], III- [(2.72 + 0.84 + 2.34 + 2.11 + 1.67) 9.68],<br />
IV- [(4.01 + 1.06 + 3.26 + 4.17 + 2.12) 14.62), P- [(0.83 +<br />
0.48 + 0.94 + 1.03) 3.28]. However, the dimension of the<br />
eyes is: AM 0.20, AL 0.67, PM 0.23, PL 1.05, AM-AM<br />
0.02, AM-AL 0.01, PM-PM 0.01, PM-PL 0.26, AM-PM<br />
0.22, AL-PL 0.32. AM-C 0.17, AL-C 0.14. LE (PM), SE<br />
(AM).<br />
Description: This species’ prosoma is yellow-brown,<br />
while the eye region is darker. The chelicerae is darker<br />
than the overall colour and it has 3 teeth. The<br />
opisthosoma is light to yellow-brown, while the male<br />
pedipalp is seen as figs.<br />
General distributions: It is generally distributed as<br />
Palaearctic ducts (Nentwig et al. 2011; Platnick, 2011).<br />
Echemus angustifrons (Westring, 1861) (Figure 2c)<br />
Material: The material used were obtained <strong>from</strong> Tanir<br />
Akpınar et al. 16375<br />
town (38° 25' N 36° 55' E), 1282 m, 15.04.2007 (1♀ ) in<br />
Afşin district, Kahramanmaraş province, Turkey. In this<br />
study, the specimens were found under stones on the<br />
orchard of Prunus avium.<br />
Female: The total length of the female species is 11.01.<br />
Its carapace is 8.08 in length and 6.46 in width. Its<br />
abdomen has a length of 2.93 and a width of 1.85. The<br />
lengths of the species’ legs and pedipalp are: I- [(2.49 +<br />
0.78 + 2.03 + 1.18 + 1.06) 7.54], II- [(2.34 + 7.3 + 1.89 +<br />
1.11 + 1.05) 13.69], III- [(1.55 + 0.89 + 1.33 + 1.24 +<br />
1.06) 6.07], IV- [(2.20 + 1.07 + 2.36 + 1.62 + 1.46) 8.71],<br />
P- [(0.95 + 0.32 + 0.42 + 0.85) 2.54]. However, the<br />
dimension of the species’ eyes is: AM 0.23, AL 0.63, PM<br />
0.11, PL 0.98, AM-AM 0.23, AM-AL 0.09, PM-PM 0.01,<br />
PM-PL 0.30, AM-PM 0.06, AL-PL 0.19. AM-C 0.22, AL-C<br />
0.45. LE (PM), SE (AM).<br />
Description: The prosoma has darker hairs than the<br />
opisthosoma. The distal leg segments are darker than the<br />
body colour, which varies <strong>from</strong> light orange to light brown.<br />
Nevertheless, the opisthosoma is grey in colour, and its<br />
abdomen is without scutum; although the epigynum has a<br />
wide hood and septum, while the spermathecae have<br />
recurved anterior lobes.<br />
General distributions: It is generally distributed in<br />
Central Asia to Europe (Platnick, 2011).<br />
Setaphis gomerae (Schmidt, 1981) (Figure 1c and d)<br />
Material: The material used were obtained <strong>from</strong><br />
Altinyayla village (37° 43' N, 36° 29' E), 1260 m,<br />
03.05.2009 (1♂) in Andirin district, Kahramanmaraş<br />
province; and <strong>from</strong> Serince village (38° 05' N, 38° 36' E),<br />
1533 m, 26.05.2007 (1♂) in Sincik district; cross road<br />
Hacihalil and Kuyucak villages (37° 40' N, 38° 16' E),<br />
614 m, 27.04.2008 (1♂) in Besni district; and Gözebaşi<br />
village (37° 46' N, 38° 23' E), 644 m, 27.04.2008 (1♂) in<br />
City center, Adiyaman province, Turkey. The specimens<br />
were found usually under stones or pieces of dried mud,<br />
and sometimes they were found in fens on heaths.<br />
Male: The total length of the male species is 4.6. Its<br />
carapace is 1.95 in length and 1.64 in width. Its abdomen<br />
has a length of 2.30 and a width of 1.36. The lengths of<br />
the species’ legs and pedipalp are: I- [(1.07 + 0.68 + 1.17<br />
+ 0.82 + 0.57) 4.31], II- [(0.68 + 0.46 + 0.76 + 0.70 +<br />
0.51) 3.11], III- [(0.76 + 0.40 + 0.81 + 0.84 + 0.69) 3.5],<br />
IV- [(0.83 + 0.59 + 1.48 + 1.25 + 0.52) 4.67], P- [(1.25 +<br />
0.44 + 0.33 + 5.57) 7.59]. However, the dimension of the<br />
eyes is: AM 0.11, AL 0.31, PM 0.09, PL 0.52, AM-AM<br />
0.11, AM-AL 0.08, PM-PM 0.09, PM-PL 0.6, AM-PM<br />
0.21, AL-PL 0.18. AM-C 0.22, AL-C 0.49. LE (PM), SE<br />
(AM).<br />
Description: The males can be recognized by the short<br />
projection restricted to the retrolateral side of the terminal<br />
apophysis. They have the metatarsal preening comb that<br />
is characteristic of zelotines, in addition to a distinctively<br />
coiled embolus in males. The typically enlarged, nearly
16376 Afr. J. Biotechnol.<br />
a b<br />
c d<br />
e f<br />
Figure 1. (a) Right view and (b) ventral view of Drassodes cupreus (Blackwall, 1834); (c)<br />
ventral view; (d) right view of Setaphis gomarea (Schmidt, 1981); (e) right view and (f)<br />
ventral view of Zelotes hermani (Chyzer, 1897). They all show the left male palp, while the<br />
scale lines are 0.5 mm.
a b<br />
c<br />
Akpınar et al. 16377<br />
Figure 2. (a) Drassodex hypocrita (Simon, 1878); (b) Trachyzelotes fuscipes (L. Koch, 1866); (c) Echemus<br />
angustifrons (Westring, 1861). They all show the ventral view of epigyne, while the scale lines are 0.5 mm.<br />
contiguous posterior median eyes suggest that Setaphis<br />
is more closely related to Camillina and Drassyllus than<br />
to Zelotes (Platnick and Murphy, 1996).<br />
General distributions: The species is generally<br />
distributed in Canary Island (Platnick and Murphy, 1996).<br />
Trachyzelotes fuscipes (L. Koch, 1866) (Figure 2b)<br />
Material: The material used were obtained <strong>from</strong> the<br />
cross roads of Boztepe and Sariharman villages (37° 43'<br />
N, 38° 27' E), 634 m, 26.04.2008 (1♀) in the city center of<br />
Adiyaman province, Turkey. The spider was found under<br />
pieces of chalk close to the open space of the forest.<br />
Female: The total length of the female species is 4.6. Its<br />
carapace is 1.83 in length and 1.37 in width. Its abdomen<br />
has a length of 2.76 and a width of 1.64. The lengths of<br />
the species’ legs and pedipalp are: I- [(1.09 + 0.61 + 0.96<br />
+ 0.73 + 0.61) 4.01], II- [(1.04 + 0.41 + 0.75 + 0.57 +<br />
0.57) 3.35], III- [(0.75 + 0.27 + 0.57 + 0.60 + 0.43) 2.62],<br />
IV- [(1.10 + 0.36 + 1.04 + 0.60 + 0.40) 3.51], P- [(0.29 +<br />
0.18 + 0.25 + 0.49) 1.21]. However, the dimension of the<br />
eyes is: AM 0.03, AL 0.07, PM 0.12, PL 0.06, AM-AM<br />
0.08, AM-AL 0.06, PM-PM 0.08, PM-PL 0.06, AM-PM<br />
0.11, AL-PL 0.09. AM-C 0.05, AL-C 0.03. LE (PM), SE<br />
(AM).<br />
Description: The species’ carapace is yellow and brown<br />
in colour, while the opisthosoma is grey-dark brown in<br />
colour. The eyes and chelicera are dark brown; though<br />
the setas of the chelicera are clannish. The femur, patella<br />
and tibia are darker than the metatarsus and tarsus. The<br />
epigynal upper lateral margin is sclerotised and the<br />
lateral parts are pointed, whereas the vulva has an<br />
evident curve and its spermathecal duct is oval.<br />
General distributions: It is generally distributed <strong>from</strong> the<br />
Mediterranean to Central Asia, USA (Platnick, 2011).<br />
Zelotes hermani (Chyzer, 1897) (Figure 1e and f)<br />
Material: The material used were obtained <strong>from</strong> the city<br />
center of Kayatepe village (37° 51' N, 38° 15' E), 974 m,<br />
27.04.2008 (1♂), Adiyaman province, Turkey. The<br />
spiders were found running under the sun among loose<br />
stones.<br />
Male: The total length of the male spider species’ is 3.08.<br />
Its carapace is 1.71 in length and 1.40 in width. Its<br />
abdomen has a length of 1.37 and a width of 0.77. The<br />
lengths of the species’ legs and pedipalp are: I- [(1.19 +<br />
0.36 + 0.81 + 0.71 + 0.62) 3.76], II- [(0.91 + 0.40 + 0.79 +<br />
0.65 + 0.58) 3.34], III- [(0.81 + 0.39 + 0.44 + 0.54 + 0.51)<br />
2.70], IV- [(1.18 + 0.52 + 0.89 + 1.09 + 0.62) 4.29], P-<br />
[(0.27 + 0.26 + 0,19 + 0.67) 1.39]. However, the<br />
dimension of the eyes is completely unmeasured.
16378 Afr. J. Biotechnol.<br />
Description: The carapace is dark brown to black,<br />
though its edge is darker, while the opisthosoma is black<br />
in colour. The legs are yellowish in colour and the femur,<br />
patella and tibia of the species’ (I-II) legs are darker than<br />
other leg segments. However, the tibial apophysis are<br />
long and slightly oblique, while the embolus are short and<br />
broad.<br />
General distributions: The species is generally<br />
distributed <strong>from</strong> Russia to Central Europe (Platnick,<br />
2011).<br />
ACKNOWLEDGEMENTS<br />
The authors acknowledge the Scientific Research<br />
Projects Unit of the University of Gaziantep (Project<br />
No.FEF.10.06) for financially supporting this work.<br />
However, some of the data used in this study were<br />
extracted <strong>from</strong> the doctoral thesis of the first author.<br />
REFERENCES<br />
Bayram A (2007). The Checklist of the Spiders of Turkey (Araneae;<br />
Arachnida). Online version:<br />
http://www.spidersofturkey.com/viewpage.php? p. 46<br />
Kovblyuk M, Seyyar O, Demir H, Topçu A (2009). New taxonomic and<br />
faunistic data on the gnaphosid spiders of Turkey (Aranei:<br />
Gnaphosidae). Arthropoda Selecta. 18(3-4): 169-187.<br />
Nentwig W, Blick T, Gloor D, Hänggi A, Kropf C (2011). Spiders of<br />
Europe, Version 6. Online version: www.araneae.unibe.ch.<br />
Özdemir A, Varol I, Akan Z, Kütük M, Kutbay F, Özaslan M (2006). The<br />
Fauna of Spider (Araneae) in the Nizip and Karkamış – Gaziantep<br />
(Turkey). Biotechnol. Biotechnol. Equipment, 20 (1): 74-77.<br />
Platnick N (2011). The World Spider Catalog, Version 12.0. Online<br />
version: http://research.amnh.org./iz/spiders/catalog/index.html<br />
Platnick N, Murphy JA (1996). Review of the Zelotine Ground Spider<br />
Genus Setaphis (Araneae, Gnaphosidae). Am. Mus. Novit. 3162: 1-<br />
23.<br />
Roberts MJ (1995). Spiders of Great Britain and Northern Europe.<br />
Collins, Harley Books. Cochester. p. 682.<br />
Seyyar O (2009). Ground spiders (Araneae:Gnaphosidae) fauna of the<br />
East Mediterranean Region of Turkey. University of Erciyes, Science<br />
Enstitute, Kayseri, p. 166.<br />
Seyyar O, Ayyıldız N, Topçu A (2008). Updated Checklist of Ground<br />
Spiders (Araneae: Gnaphosidae) of Turkey, With Zoogeographical<br />
and Faunastic Remarks, Ent. News, 119(5): 509-520.<br />
Seyyar O, Demir H (2010). New Records of ground spiders <strong>from</strong> Turkey<br />
(Aranea: Gnaphosidae). Serket, 12(1): 13-16.<br />
Topçu A, Demir H, Seyyar O (2005). A Checklist of the Spiders of<br />
Turkey. Serket. 9(4): 109-140.<br />
Varol Mİ (1996). Investigation of taxonomy Lycosidae, Gnaphosidae<br />
and Clubionidae fauna of the Van lake basin (Ordo: Araneae).<br />
University of Yüzüncü Yıl, Science Enstitute, Van, p. 76.<br />
Varol Mİ (2006). Spider List of Turkey. Online version:<br />
http://www1.gantep.edu.tr/~varol/tr/asil_tr.htm<br />
Varol Mİ (2001). The fauna, ecology and systematics of the groundliving<br />
spiders in the Northeast Anatolia Region (Arachnida: Araneae).<br />
University of Yüzüncü Yıl, Science Enstitute, Van, p. 147.
African Journal of Biotechnology Vol. 10(72), pp. 16379-16386, 11 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.876<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
A new endophytic taxol- and baccatin III-producing<br />
fungus isolated <strong>from</strong> Taxus chinensis var. mairei<br />
Yechun Wang 1,2 and Kexuan Tang 1 *<br />
1 Plant Biotechnology Research Center, School of Agriculture and Biology, Fudan-SJTU-Nottingham Plant Biotechnology<br />
R&D Center, Shanghai Jiao Tong University, Shanghai 200240, PR China.<br />
2 Current address: Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, MO 63132, USA.<br />
Accepted 8 July, 2011<br />
120 endophytic fungi were isolated <strong>from</strong> the old inner bark of Taxus chinensis var. mairei and only a<br />
fungus was detected to produce Taxol and related taxanes in potato dextrose agar (PDA) medium. The<br />
presence of taxol and baccatin III was confirmed by high performance liquid chromatography combined<br />
with mass spectrometry (LC-MS) and competitive inhibition enzyme immunoassay (CIEIA). The fungal<br />
compound showed cytotoxic activity on liver cancer cell line BEL7402 in vitro. The strain was identified<br />
as one of Didymostilbe sp. (designated as DF110) according to its morphological characteristics. The<br />
isolation of such fungi provided a promising alternative approach to producing taxol in the near future.<br />
Key words: Taxol, baccatin III, endophytic fungus, Didymostilbe sp.<br />
INTRODUCTION<br />
The tricyclic diterpene taxol, a highly effective anticancer<br />
drug originally isolated <strong>from</strong> the bark of Taxus brevifolia<br />
(Wani et al., 1971), has been employed for the treatment<br />
of a variety of cancers. With increasing applications in<br />
clinical use and scientific research, there is an urgent<br />
need of Taxol than ever. However, the isolation of taxol<br />
<strong>from</strong> the tree bark is limited on account of the relative<br />
scarcity of yew and extremely low content of taxol in the<br />
plant. To solve such a problem, other attempts such as<br />
tissue culture (Christen et al., 1989; Hu et al., 2003) and<br />
chemical synthesis (Baloglu and Kingston, 1999; Holton<br />
et al., 1995; Nicolaou et al., 1994) etc., have been made<br />
to produce the drug. In addition, a great deal of efforts<br />
have been focused on the isolation of endophytic<br />
taxol-producing fungi since an exciting progress of the<br />
first taxol-producing fungus, Taxomyces andreanae, had<br />
been discovered in T. brevifolia (Stierle et al., 1993).<br />
Subsequently, many other endophytic taxol-producing<br />
*Corresponding author. E-mail: kxtang1@yahoo.com,<br />
kxtang1@163.com. Tel: 86-21-34206916. Fax: 86-21-34206916.<br />
fungi were reported (Guo et al., 2006; Kumaran et<br />
al.,2011; Li et al., 1998, 1996; Liu et al., 2009; Metz et<br />
al., 2000; Shrestha et al., 2001; Soca-Chafre et al.,<br />
2011;Strobel et al., 1996; Wang et al., 2000, 2007; Zhao<br />
et al., 2009; Zhou et al., 2010). The isolation of such fungi<br />
bring a new promising way for the production of taxol by<br />
fermentation techniques, which have a lower cost<br />
compared to other methods.<br />
In our previous report, we disclosed the discovery of an<br />
endophytic fungus BT2 being capable of producing taxol<br />
and taxane baccatin III <strong>from</strong> the old inner bark of Taxus<br />
chinensis var. mairei (Guo et al., 2006; Wang et al., 2007).<br />
In this study, we reported another newly isolated<br />
endophytic taxol- and baccatin III- producing fungus.<br />
Furthermore, its biological activity was also tested against<br />
liver cancer cell line.<br />
MATERIALS AND METHODS<br />
Isolation of endophytic fungus <strong>from</strong> T. chinensis var. mairei and<br />
its identification<br />
The fungus used in this study was isolated <strong>from</strong> the old inner bark of<br />
T. chinensis var. mairei, which grows in Sichuan province,<br />
Southwest China. After the bark was cut into small pieces of about
16380 Afr. J. Biotechnol.<br />
0.25 cm 2 , these pieces were treated with 70% (v/v) ethanol for 5 min,<br />
and then rinsed three times with distilled water; the water was<br />
allowed to evaporate and then the outer black bark was removed off<br />
with a sterilized sharp blade. Small pieces of the inner bark were<br />
placed on the surface of water agar (2% g/v) in Petri plates and<br />
incubated at 25°C in the dark. After several days, fungi were<br />
observed growing <strong>from</strong> the inner bark fragments in the plates.<br />
Individual hyphal tips of the various fungi were transferred to new<br />
potato dextrose agar (PDA) medium and incubated at 25°C for one<br />
week. The same way was repeated 5 times for fungus purity. The<br />
endophytic fungus was identified according to its morphological<br />
characteristics (Barnett and Hunter, 1977).<br />
Fungal culturing and taxane isolation<br />
The endophytic fungus strain DF110 was grown in 1-L Erlenmeyer<br />
flasks containing 250 ml PDA liquid medium. The fungus was<br />
incubated at 25°C with shaking (140 rpm) for three weeks. Then the<br />
entire culture medium and mycelia were collected, respectively,<br />
through four layers of cheesecloth. The mycelia were re-suspended<br />
by 100 ml methanol and ultrasonicated for 15 to 20 min on ice, then<br />
centrifuged to collect the supernatant. The culture medium were<br />
blended well and extracted with equal volume of methylene chloride<br />
twice, and the organic phase was finally mixed with the mycelia<br />
supernatant. The mixtures were taken to dryness under reduced<br />
pressure at 50°C and the residue was dissolved in 1 ml methanol<br />
and the insoluble materials were removed off by centrifugation<br />
(12000 g) for 30 min at 4°C. The supernatant was filtered through a<br />
0.2 μm polymeric filter prior to HPLC analysis.<br />
LC-MS analyses<br />
After purification, samples were analyzed by a Perkin-Elmer HPLC<br />
ISS 200 system combined with a Hewlett-Packard Series 1100 MSD<br />
system. The column was an Alltech Econosil C18. Mass spectra<br />
were acquired in positive ion mode. Samples in 10 μl of methanol<br />
were injected and eluted with 0.8 ml/min with a starting gradient<br />
<strong>from</strong> 40 : 60 (v/v) H2O : methanol for 10 min, then eluted with 100%<br />
methanol for 20 min, and finally with 40:60 (v/v) H2O : methanol for<br />
10 min. A variable wavelength recorder set at 230 nm was used to<br />
detect taxol and baccatin III eluting <strong>from</strong> the column.<br />
ELISA<br />
A competitive inhibition enzyme immunoassay (CIEIA) kit (Hawaii<br />
Biotech Inc) was employed for the detection of taxol and baccatin III<br />
(Grothaus et al., 1993).The assay is sensitive to about 1 ng/ml. The<br />
assay was carried out <strong>using</strong> Taxane Immunoassay Kits (TA02,<br />
specific for Taxol; TA03, specific for baccatin III. Hawaii Biotech Inc)<br />
according to the procedure recommended by the suppliers.<br />
Cytotoxicity study<br />
The liver cancer cell line BEL7402 was used to evaluate the<br />
biological effect of the fungal crude extraction. The procedures were<br />
performed as follows: Cancer cells were placed in a 96-well plate of<br />
3×10 4 per well and cultured at 37°C for 10 h, and then aliquots (100<br />
µl) of the fungal extraction were added into the 96-well plate at 37°C<br />
for 48 h, meanwhile, aliquots of 50 µg/ml authentic taxol were added<br />
as a positive control. Another fungal extraction which did not<br />
produce taxol was also added as negative control. After incubation<br />
for 48 h, the activity of cancer cells was observed by <strong>using</strong><br />
microscope.<br />
RESULTS<br />
Identification of the fungus<br />
Colonies of strain DF110 grew and extended more rapidly<br />
on PDA medium under 25°C. The mycelium surface is<br />
approximately lanose and eggshell yellow when young<br />
and forms many yellow brown to dark green conidial<br />
areas when it matures; reverse of colonies becoming<br />
golden leaf’s yellow. Conidiophores are commonly 125 to<br />
375 µm in length and with diameter 2.8 to 3.0 µm,<br />
colorless, a part branched and some of them become light<br />
yellow in age. There are complex Penicilli on the top of<br />
conidiophores. Some of sterigmata show thin rod,<br />
commonly 7.5 to 25 µm by 1.5 to 2 µm. Conidia is usually<br />
elliptical or rod, a few oval, commonly 4 to 7.3 µm by 2.3<br />
to 3.3 µm, usually forming a septum in age, and many of<br />
them are usually gathered into a drop of water. Some of<br />
conidiophores are usually gathered into synnemata. The<br />
strain DF110 was different <strong>from</strong> that of the endophytic<br />
taxol-producing fungi previously reported, and was<br />
identified as Didymostilbe sp. according to its<br />
morphological characteristics (Barnett and Hunter, 1977)<br />
and was named DF110 (Figure 1).<br />
LC-MS identified taxol and baccatin III in the fungal<br />
compound<br />
A total of 120 fungi were isolated <strong>from</strong> the old inner bark<br />
of T. chinensis var. mairei, but only strain DF110 was<br />
observed to produce taxol and baccatin III by LC-MS. The<br />
fungal compound produced a peak at 6.769 min when<br />
eluting <strong>from</strong> the C18 column, with approximate same<br />
retention time (6.798 min) as authentic baccatin III (Figure<br />
2). However, the fungal compound has not appeared<br />
apparent peak at about the same retention time (15.2 min)<br />
as authentic taxol, probably due to the low level of taxol in<br />
this sample. So amplified 10-L fluid culture medium and<br />
mycelia were prepared and processed by methylene<br />
chloride and methanol by <strong>using</strong> the method described in<br />
material and methods. Finally, the residue was dissolved<br />
in 500 µl methanol and volume of 100 µl was used to<br />
detect the existence of taxol on HPLC and the rest for<br />
cytotoxicity assay. The results show that the fungal<br />
compound had a peak at 15.2 min corresponding to<br />
authentic taxol retention time (data no shown). Further<br />
convincing mass spectroscopic evidence for the identity of<br />
Taxol and baccatin III was obtained by mass<br />
spectroscopy (Figure 3). Characteristically, authentic taxol<br />
produced electrospray mass spectrum, with the major<br />
molecular ion being (M+H) + = 854, (M+Na) + = 876 and<br />
(M+K) + = 892, and authentic baccatin III yielded the major<br />
molecular ion being (M+H) + = 587, (M+Na) + = 609 and<br />
(M+K) + = 625 (Stierle et al., 1993). By comparison, the<br />
fungal compound also yielded a similar electrospray mass<br />
spectrum as authentic taxol and baccatin III, respectively.<br />
The content of baccatin III was calculated as about 8 to 15
Wang and Tang 16381<br />
Figure 1. Morphological observation of Didymostilbe sp. strain DF110. A: Colonies of strain DF110 on PDA plate after<br />
30-day incubation at 25°C; B: Conidia of strain DF110; C: Penicilli and conidiophore of strain DF110; D: Synnemata and<br />
Penicillus of strain DF110; E: The conidia of strain DF110 on the top of Penicillus.<br />
µg per litre culture. However, the content of taxol was not<br />
precise quantified due to the low level of taxol under the<br />
HPLC quantification limit.<br />
Taxol and baccatin III immunoassays<br />
The competitive inhibition enzyme immunoassay (CIEIA)<br />
method was generally used to screen for the presence of<br />
taxanes in crude fungal extracts (Guillemard et al., 1999;<br />
Guo et al., 2006; Li et al., 1998; Stierle et al., 1993). In<br />
order to confirm reliability of the aforementioned results,<br />
taxol and baccatin III assays in the sample were carried<br />
out by <strong>using</strong> a taxane Immunoassay Kits. The test <strong>using</strong><br />
specific monoclonal antibody TA02 and TA03 gave<br />
positive results, respectively.<br />
The anticancer activities study<br />
The cytotoxicity of the fungal compound was also studied,<br />
which showed that the fungal compound had an obvious
16382 Afr. J. Biotechnol.<br />
A<br />
B<br />
Figure 2. HPLC analysis of the fungus DF110 product (A) and of authentic baccatin III (retention time = 6.7 ± 0.1 min) (B).
A<br />
A<br />
Ion’s relative abundance (%)<br />
Ion’s relative abundance (%)<br />
B<br />
Wang and Tang 16383<br />
Figure 3. Combined reverse-phase HPLC-atmospheric pressure chemical ionization mass spectrum analysis of authentic<br />
baccatin III (retention time = 6.7 ± 0.1 min; (A) and of the fungal baccatin III (retention time = 6.7 ± 0.1 min; (B). The<br />
diagnostic mass spectral fragment ions are at m/z (M+H) + = 587, (M+Na) + = 609, and (M+K) + = 625; the mass spectra of<br />
authentic taxol (C) and fungal taxol (D) (retention time = 15.2 ± 0.1 min). The diagnostic mass spectral fragment ions are at<br />
m/z (M+H) + = 854, 609 (M+Na) + = 876, and (M+K) + = 892.
16384 Afr. J. Biotechnol.<br />
C<br />
Ion’s relative abundance (%)<br />
D<br />
Ion’s relative abundance (%)<br />
Figure 3. Contd.<br />
cytotoxic effect on the liver cancer cell line BEL7402<br />
(Figure 4). The negative control had a little cytotoxicity to<br />
cancer cell line BEL7402 because the sample used in this<br />
test was mixtures. We speculated that some components<br />
had a little cytotoxicity on the liver cancer cells BEL7402<br />
in the negative control.<br />
DISCUSSION<br />
Since the first endophytic taxol-producing fungus was<br />
Figure 3<br />
reported in 1993, great progresses on this field have been<br />
obtained. Although, the production of taxol by most<br />
endophytic fungi is relatively low compared with that of the<br />
taxus trees, the fungi have the short generation time and<br />
high growth rate; what’s more, genetic manipulation of<br />
fungi is achieved more easily than that of plants, so it may<br />
be easier to improve the taxol production with the help of<br />
genetic engineering. Improving the culturing techniques<br />
and the application of genetic engineering may improve<br />
taxol and baccatin III production (Demain, 1981; Stierle et<br />
al., 1993). Strain DF110 is different <strong>from</strong> the previous
Wang and Tang 16385<br />
Figure 4. The microscope observation of the liver cancer cells BEL7402 treated with drug. (A) No addition. (B) 50 μg/ml<br />
authentic taxol. (C) No-taxol production fungal compound. (D) The fungus DF110 compound.<br />
reported endophytic taxol-producing fungi. Although, the<br />
fungus produces low level of taxol, the amounts of<br />
baccatin III are about 8 to 15 µg/L culture. Baccatin III is<br />
an important staring material in taxol semi-synthesis<br />
(Baloglu and Kingston, 1999). Presently, most of the taxol<br />
for clinical use is produced by the chemical semi-synthetic<br />
approach (Holton et al., 1995). However, the extraction<br />
and isolation of the precursors is relatively complex and<br />
low yield <strong>from</strong> taxus tissues, depending on epigenetic and<br />
environmental factors (Vidensek et al., 1990; Wheeler et<br />
al., 1992). Therefore, this increases the urgent need for<br />
baccatin III as a starting material to synthesize taxol and<br />
taxotere, a synthetic analog with anticancer activity similar<br />
to taxol (Holton et al., 1995). Studies are in progress to<br />
transfer the key genes of taxol biosynthetic pathway into<br />
the fungus by restriction enzyme-mediated integration<br />
(REMI) technique, with an aim of obtaining stable fungal<br />
transformants with high productivity of taxol and baccatin<br />
III. UP to date, some fungal transformants have been<br />
obtained (unpublished). So the strain DF110 may be<br />
applied as staring material in taxol semi-synthesis and the<br />
fungus may be a candidate for exploring taxol biosynthetic<br />
pathway in fungi.<br />
In conclusion, the combined LC-MS, immunochemical<br />
and cytotoxicity test suggest that the strain DF110<br />
produces taxol and baccatin III. By optimizing culturing<br />
conditions and genetic manipulation, the fungus may be<br />
an alternative candidate for the production of taxol and<br />
baccatin III by fermentation technology under our efforts<br />
in the near future.<br />
ACKNOWLEDGEMENTS<br />
This work was funded by China National “863” High-tech<br />
Program, China Ministry of Education and Shanghai<br />
Science and Technology Committee. The authors would<br />
like to thank Ms. Ping TAO (Instrumental Analysis and<br />
Test Center, Shanghai Jiaotong University, China) for<br />
LC-MS analysis.<br />
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Hu YM, Gan FY, Lu CH, Ding HS, Shen YM (2003). Production of Taxol<br />
and related taxanes by cell suspension cultures of Taxus yunnanensis.<br />
Acta. Bot. Sin. 45: 373-378.<br />
Kumaran RC, Jung H, Kim HJ (2011). In vitro screening of taxol, an<br />
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Li JY, Sidhu RS, Ford EJ, Long DM, Hess WM, Strobel GA (1998). The<br />
induction of taxol production in the endophytic fungus-Periconia sp<br />
<strong>from</strong> Torreya grandifolia. J. Ind. Microbiol. Biotechnol. 20: 259-264.<br />
Li JY, Strobel G, Sidhu R, Hess WM, Ford EJ (1996). Endophytic<br />
taxol-producing fungi <strong>from</strong> bald cypress, Taxodium distichum.<br />
Microbiology, 142 (8): 2223-2226.<br />
Liu K, Ding X, Deng B, Chen W (2009). Isolation and characterization of<br />
endophytic taxol-producing fungi <strong>from</strong> Taxus chinensis. J. Ind.<br />
Microbiol. Biotechnol. 36: 1171-1177.<br />
Metz AM, Haddad A, Worapong J, Long DM, Ford EJ, Hess WM, Strobel<br />
GA (2000). Induction of the sexual stage of Pestalotiopsis microspora,<br />
a taxol-producing fungus. Microbiology, 146(8): 2079-2089.<br />
Nicolaou KC, Yang Z, Liu JJ, Ueno H, Nantermet PG, Guy RK,<br />
Claiborne CF, Renaud J, Couladouros EA, Paulvannan K, Sorensen<br />
EJ (1994). Total synthesis of taxol. Nature, 367: 630-634.<br />
Shrestha K, Strobel GA, Shrivastava SP, Gewali MB (2001). Evidence<br />
for paclitaxel <strong>from</strong> three new endophytic fungi of Himalayan yew of<br />
Nepal. Planta Med. 67: 374-376.<br />
Soca-Chafre G, Rivera-Orduna FN, Hidalgo-Lara ME,<br />
Hernandez-Rodriguez C, Marsch R, Flores-Cotera LB (2011).<br />
Molecular phylogeny and paclitaxel screening of fungal endophytes<br />
<strong>from</strong> Taxus globosa. Fungal Biol. 115: 143-156.<br />
Stierle A, Strobel G, Stierle D (1993). Taxol and taxane production by<br />
Taxomyces andreanae, an endophytic fungus of Pacific yew. Science,<br />
260: 214-216.<br />
Strobel G, Yang X, Sears J, Kramer R, Sidhu RS, Hess WM (1996).<br />
Taxol <strong>from</strong> Pestalotiopsis microspora, an endophytic fungus of Taxus<br />
wallachiana. Microbiology, 142(2): 435-440.<br />
Vidensek N, Lim P, Campbell A, Carlson C (1990). Taxol content in bark,<br />
wood, root, leaf, twig, and seedling <strong>from</strong> several Taxus species. J. Nat.<br />
Prod. 53: 1609-1610.<br />
Wang J, Li G, Lu H, Zheng Z, Huang Y, Su W (2000). Taxol <strong>from</strong><br />
Tubercularia sp. strain TF5, an endophytic fungus of Taxus mairei.<br />
FEMS Microbiol. Lett. 193: 249-253.<br />
Wang Y, Guo B, Miao Z, Tang K (2007). Transformation of<br />
taxol-producing endophytic fungi by restriction enzyme-mediated<br />
integration (REMI). FEMS Microbiol. Lett. 273: 253-259.<br />
Wani MC, Taylor HL, Wall ME, Coggon P, McPhail AT (1971). Plant<br />
antitumor agents. VI. The isolation and structure of taxol, a novel<br />
antileukemic and antitumor agent <strong>from</strong> Taxus brevifolia. J. Am. Chem.<br />
Soc. 93: 2325-2327.<br />
Wheeler NC, Jech K, Masters S, Brobst SW, Alvarado AB, Hoover AJ,<br />
Snader KM (1992). Effects of genetic, epigenetic, and environmental<br />
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Prod. 55: 432-440.<br />
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1202-1207.
African Journal of Biotechnology Vol. 10(72), pp. 16387-16392, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2052<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Heart dysfunction and fibrosis in rat treated with<br />
myocardial ischemia and reperfusion<br />
Cheng-Han Huang 1 , Yi-Ming Huang 2 , Yung-Sheng Tseng 2 , Wei-Chi Lee 3 , Jui-Te Wu 2 , Zhi-Jia<br />
Zheng 2 and Hsi-Tien Wu 1 *<br />
1 Department of Bioagricultural Science, National Chia Yi University, Chiayi, 60004, Taiwan.<br />
2 Department of Veterinary Medicine, National Chia Yi University, Chiayi, 60004, Taiwan.<br />
3 Animal Science Technology Service and Pathology Section Head, Animal Production Technical Division, Uni-President<br />
Enterprises Corp, Tainan, 72046, Taiwan.<br />
Accepted 30 September, 2011<br />
Because cardiovascular disease remains a serious problem in modern human society, the aim of this<br />
study was to establish the rat model animal and to compare the heart dysfunction and fibrosis with SD<br />
and LE rats when treated with myocardial ischemia and reperfusion operation. A 20-minute thoracotomy<br />
was performed on the rat at the left anterior descending coronary artery occlusion; then the perfusion<br />
was carried out. The left ventricular diastolic diameter and left ventricular systolic diameter (LVEDd and<br />
LVEDs) were both reduced in LE and SD rats after surgery. Compared with the sham group, the<br />
performance of the left ventricular fractional shortening (LVFS) significantly decreased, indicating<br />
systolic dysfunction was affected after surgery, and SD was significantly higher than LE at LVFS<br />
decreasing rate. The significant areas of collagen fibers were detected by Masson's tri-chrome staining<br />
after surgery. These results suggest that SD rat is more suitable than LE rat for successful<br />
establishment of the model of myocardial ischemia and reperfusion. Also, the rat model can provide<br />
good experimental materials for regenerative medicine and drug testing to enhance research results in<br />
the future.<br />
Key words: Myocardial infarction, myocardial ischemia and reperfusion, animal model.<br />
INTRODUCTION<br />
Cardiovascular diseases, especially coronary artery<br />
disease, are the leading cause of mortality and morbidity<br />
worldwide (Samadikuchaksaraei, 2006; Venardos et al.,<br />
2007). The effect of myocardial infarction (MI) primarily<br />
caused by coronary artery obstruction results in heart<br />
damage and death associated with myocardial cells<br />
(Thygesen et al., 2007). Even if other heart tissue is not<br />
affected by coronary artery blockage, heart failure may<br />
still result, perhaps because the burden is finally too great<br />
*Corresponding author. E-mail: htwu@mail.ncyu.edu.tw. Tel:<br />
+886-5-2717767. Fax: +886-5-2717755.<br />
Abbreviations: LVEDd, Left ventricular diastolic diameter;<br />
LVEDs, left ventricular systolic diameter; LVFS, left ventricular<br />
fractional shortening; MI, myocardial infarction; NRC, United<br />
States National Research Council; LAD, left anterior<br />
descending artery; FS%, fractional shortening.<br />
(Camici and Crea, 2007). Because of scar- and ischemia-<br />
related postinfarction events, clinical manifestations are<br />
enormous and heterogeneous. The damaged left ventricle<br />
undergoes progressive “remodeling” and chamber<br />
dilation with myocyte slippage and fibroblast proliferation.<br />
These events reflect an apparent lack of effective intrinsic<br />
mechanisms for myocardial repair and regeneration<br />
(Minguell and Erices, 2006).<br />
Atherosclerosis with thrombus accumulated in the<br />
coronary artery causes MI (Hansson, 2005; Insull, 2009).<br />
Because of its high metabolic rate, the myocardium<br />
undergoes irreversible injury within 20 min of ischemia,<br />
which begins in the inner layers and moves toward the<br />
outer layers, resulting in the death of large numbers of<br />
myocardial cells over a 3 to 6 h period (Michael et al.,<br />
1995). Although, cardiomyocytes are the most vulnerable<br />
cells, ischemia also kills vascular cells, fibroblasts, and<br />
nerves in the tissue. Myocardial necrosis causes severe<br />
inflammation, and millions of marrow-derived leukocytes
16388 Afr. J. Biotechnol.<br />
enter the infarct region (Dobaczewski et al., 2010). The<br />
macrophages phagocytose the necrotic cell debris and<br />
lead to the subsequent healing of the wounds. Before<br />
they become scabs, they form a granulation tissue, which<br />
contains a proliferation of fibroblasts and endothelial<br />
cells, around the infarct area and the surrounding tissue.<br />
Ultimately, granulation tissue remodels to form densely<br />
collagenous scar tissue (Laflamme and Murry, 2005). The<br />
repair process of myocardial infarction in humans<br />
requires 2 months to complete; in small experimental<br />
animals, such as mice or rats, the process occurs much<br />
faster.<br />
Various animal studies have shown that myocardial<br />
ischemia after reperfusion generates a complex series of<br />
inflammatory reactions (Michael et al., 1995). The heart<br />
function can be recovered through heart reperfusion<br />
when the ischemia occurs in less than 20 min. This step<br />
will not lead to myocardial necrosis but may cause<br />
temporary heart stunning. Cell necrosis amplifies <strong>from</strong><br />
the subendocardium to subepicardium continuously when<br />
the coronal artery occlusion lasts longer than 20 min<br />
(Virmani et al., 1992). Myocardial ischemia and reperfusion<br />
in the myocardium lead to serious inflammation in<br />
the cardiac tissue, damaging and weakening the ventricular<br />
function and possibly leading eventually to<br />
ventricular hypokinesis, akinesis, or dyskinesis (Pfeffer<br />
and Braunwald, 1990).<br />
Medical scientists have studied coronary artery disease<br />
for decades, yet deaths caused by MI and related<br />
cardiovascular diseases continue to have serious impact<br />
in modern society (Venardos et al., 2007). Thus,<br />
choosing a suitable animal model provides good test<br />
material for MI and helps in clinical studies that may be<br />
needed before the development of pharmaceutical preparations.<br />
Appropriate animal model can also provides<br />
good material for regenerative medicine and cell therapy<br />
research in MI and reperfusion. Thus, the aim of this<br />
study was to establish the rat model animal and to<br />
compare the heart dysfunction and fibrosis with SD and<br />
LE rats after myocardial ischemia and reperfusion<br />
operation.<br />
MATERIALS AND METHODS<br />
Animals used in the experiment<br />
Eight-week-old male rats were used to establish the MI model<br />
animal. SD rats (Bltw:SD, BioLASCO Taiwan Co., Ltd) and LE rats<br />
(Narl:-LE, National Laboratory Animal Center, NARL Taiwan) were<br />
used for the experiment. The animals were kept in a clean<br />
conventional animal room under air, temperature, and light control.<br />
All animals were maintained, handled, and treated following NRC<br />
guidelines (1996); and the Animal Experimental Ethics Committee<br />
at National Chia Yi University approved all experiments.<br />
Myocardial ischemia and reperfusion operation in the rat<br />
The myocardial ischemia and reperfusion operations were<br />
performed according to procedures described by Michael et al.<br />
(1995) and Patten et al. (1998) with modification. Rats were<br />
anesthetized <strong>using</strong> a mixture of Zoletil (25 mg/kg) and Xylazine (10<br />
mg/kg) via intramuscular injection. With the rats in the supine<br />
position, endotracheal intubation was performed, and they were<br />
ventilated with a small animal respirator (A.D.S. 1000, Engler<br />
Engineering Co., Florida, USA). The chest was opened by a lateral<br />
cut with tenotomy scissors along the left side of the sternum, cutting<br />
through the 4th left ribs to approximately midsternum. The left<br />
anterior descending artery (LAD) ligation proceeded with a sterile 7-<br />
O silk (UNIK surgical sutures mfg. Co., Ltd., Taiwan) slipknot suture<br />
passed with a tapered needle. The blocking time was 20 min.<br />
After occlusion for a prescribed period (20 min), reperfusion<br />
occurred by unblocking the slipknot. This allowed release of the<br />
occlusion and reperfusion of the formerly ischemic bed. The chest<br />
walls were retracted by <strong>using</strong> 4-O silk monofilament suture<br />
(Ethicon, Auneau Co., France). The catheter (24G SURFLO ® IV<br />
catheter, TERUMO, Co., Philippines), which was connected with<br />
the 10 ml syringe and inserted before the chest was sutured, pulled<br />
out the residual air <strong>from</strong> chest; the respirator helped the animal<br />
breathe. The chest wall was then closed, sutured through one layer<br />
of the chest wall and muscle and a second layer through the skin<br />
and subcutaneous material. The rat was kept on a warm pad until<br />
awake. The control (sham) group underwent thoracic surgery but<br />
not vascular ligation of the LAD. The rats were placed in separate<br />
cages in an air conditioned animal room with clean water and diet<br />
for postoperative care.<br />
Histological section and Masson’s trichrome stain<br />
Two weeks after the MI and reperfusion operation, rat hearts were<br />
collected and fixed with 4% paraformaldehyde, followed by<br />
treatment with 70 to 100% ethanol and xylene. Specimens were<br />
embedded in paraffin and sectioned at a thickness of 6 µm via a<br />
microtome. Two slides were stained for each specimen, one with<br />
hematoxylin and eosin, and the other with Masson’s trichrome<br />
stain. Slides were observed with a Leica DM2000 microscope and<br />
digitally photographed (Wood et al., 2010).<br />
Echocardiography<br />
Echocardiographic assessment was performed according to<br />
procedures described by Michael et al. (1995) and Patten et al.<br />
(1998) with slight modification. Echocardiographs were obtained<br />
<strong>using</strong> the Philips SONOS 7500 Ultrasound system (Koninklijke<br />
Philips Electronics N.V.) with 12 MHz frequency transducer, 10 x 13<br />
mm footprint at an image depth of 2 cm. Left ventricular M-mode<br />
measurements at the level of the papillary muscles were used to<br />
define left ventricular end-diastolic diameter (LVEDd) and left<br />
ventricular end-systolic diameter (LVEDs). Fractional shortening<br />
(FS %) was defined as (LVEDd - LVEDs) / LVEDd x 100% (Park et<br />
al., 2010).<br />
Rats were anaesthetized intraperitoneally with a mixture of Zoletil<br />
(25 mg/kg) and Xylazine (10 mg/kg). The hair around the chest was<br />
shaved while the rat was supine and the limbs were fixed by tape.<br />
Echocardiographic assessment was performed 3 days before MI<br />
and reperfusion surgery (baseline) and 2 weeks after surgery (after<br />
treatment).<br />
Statistical analyses<br />
All values of echocardiography are listed as means ± SEM. The<br />
statistical analysis was evaluated with Student’s t-test to measure<br />
difference among means.
Huang et al. 16389<br />
Figure 1. Change of left ventricular end diastolic diameter (LVEDd, A) and left ventricular end systolic diameter (LVEDs, B) before and<br />
after myocardial ischemia and reperfusion surgery. The baseline indicated 3 days before surgery. The after treatment indicated 2<br />
weeks after surgery. The triangle line as LE rats (N=6), the black square line as SD rats (N=6). Data represented centimeters (CM).<br />
RESULT<br />
Echocardiography analysis<br />
In order to evaluate the structure and function of cardiac<br />
contractility, this test was conducted 3 days before MI<br />
and reperfusion surgery and 2 weeks after surgery, <strong>using</strong><br />
the cardiac ultrasound M-mode. Results showed that the<br />
LVEDd and LVEDs of LE and SD rats increased after<br />
surgical treatment (Figure 1). LE rats, LVEDd, baseline,<br />
0.63±0.01 cm; after treatment, 0.67±0.03 cm; SD rats,<br />
LVEDd, baseline, 0.55±0.01 cm; after treatment,<br />
0.60±0.02 cm (Figure 1A). LE rats, LVEDs, baseline,<br />
0.38±0.02 cm; after treatment, 0.41±0.05 cm; SD rats,<br />
LVEDs, baseline, 0.32±0.02 cm; after treatment,<br />
0.40±0.01 cm, P
16390 Afr. J. Biotechnol.<br />
Figure 2. Change of left ventricular shortening fraction (LVFS)<br />
before and after myocardial ischemia and reperfusion<br />
surgery. The baseline indicated 3 days before surgery. The after<br />
treatment indicated 2 weeks after surgery. The circle line as sham<br />
operation group (N=5). The triangle line as LE rats (N=6), the<br />
black square line as SD rats (N=6). Data represented percentage.<br />
Figure 3. Change of left ventricle area after myocardial ischemia and reperfusion surgery. The increased of left ventricular inside<br />
diameter (D) and the loosed of ventricular wall thickness (T) were seen at LE and SD rat that compared with sham group. Cardiac<br />
sections were stained with Masson's trichrome staining. All images were captured at 6.8 x magnification.<br />
fibrosis with SD and LE rats when treated with myocardial<br />
ischemia and reperfusion operation. For accessibility and<br />
stability of performance after the experiment, it is<br />
necessary to find the appropriate rats for the study at the<br />
outset. Two outbred rats, LE and SD, were chosen for<br />
this study to evaluate the individual differences before<br />
and after the operation.<br />
Both SD and LE rats can enter into a stable anesthesia<br />
period under appropriate doses of anesthetics and can<br />
maintain 2 to 3 h until the emergence <strong>from</strong> anesthesia,<br />
which is enough time to complete the operation (Zheng<br />
and Hu, 2006). Using the M-mode on the<br />
echocardiography combined with appropriate ane-sthetic<br />
can stabilize the measurement of cardiac diastolic and<br />
systolic performance (Migrino et al., 2008). After<br />
myocardial infarction, the left ventricular structure<br />
changed as a result of the generated mechanical stretch<br />
and led to increased ventricular wall stress. The result<br />
was a decrease in left ventricular contractility and loss of<br />
its ability to eject blood (Sutton and Sharpe, 2000). After<br />
surgical treatment, compared with LE, SD rats had<br />
obvious differences in left ventricular diastolic and
H and stain<br />
Figure 4. The myocardial fibrosis formation after myocardial ischemia and reperfusion surgery. Pictures<br />
on the left were hematoxylin and eosin (H and E) staining results, pictures on the right were Masson's<br />
trichrome staining results. Blue stain area presented the formation of myocardial fibrosis (arrow<br />
indicated). The orders <strong>from</strong> top to bottom were LE rat, SD rat and the sham group. All images were<br />
captured at 10 X object lens.<br />
systolic diameter. After the MI and reperfusion operation,<br />
on both the SD and LE, caused an increase in left<br />
ventricular diameter, and a reduction in the thickness of<br />
the left ventricular wall. Echocardiography measurements<br />
of SD after surgery were significant, the differences in left<br />
ventricular fractional shortening (LVFS) were more<br />
apparent than in LE. According to the results, the<br />
significant performance indicated the SD rats were more<br />
suitable for myocardial ischemia and reperfusion surgery.<br />
In accordance with the collagen fibers area by<br />
Masson’s trichrome staining, infarct size and distribution<br />
were also obvious. By contrast, the observation of<br />
postoperative ventricular tissue biopsies indicates that<br />
Huang et al. 16391<br />
the SD and LE rats exhibited fibrous tissue hyperplasia<br />
after myocardial self-healing and mild inflammation and<br />
macrophage infiltration in myocardial tissue; however, the<br />
postoperative inflammation and formation of collagen<br />
fibers in SD or LE rats showed no significant difference.<br />
Conclusion<br />
The study compared the heart dysfunction and fibrosis<br />
with SD and LE rats when treated with myocardial<br />
ischemia and reperfusion. From the successful rat model<br />
established, we found out that SD rat is a suitable model
16392 Afr. J. Biotechnol.<br />
animal than LE for myocardial ischemia and reperfusion<br />
studies. Rat heart systolic function weakened significantly<br />
after postoperative recovery and obviously in myocardial<br />
collagen fiber proliferation. This method to establish the<br />
model animal can be used to study drug treatment to<br />
improve the condition of myocardial ischemia, stem cell<br />
therapy research, and regenerative medicine applications,<br />
helping to improve research in cardiac medicine.<br />
ACKNOWLEDGEMENTS<br />
This work was supported by Nation Science Council,<br />
Taiwan (NSC 97-2313-B-415-005-MY3).<br />
REFERENCES<br />
Bader M (2010). Rat models of cardiovascular diseases. Methods Mol.<br />
Biol. 597: 403-414.<br />
Camici PG, Crea F (2007). Coronary microvascular dysfunction. N.<br />
Engl. J. Med. 356: 830-840.<br />
Dobaczewski M, Gonzalez-Quesada C, Frangogiannis NG (2010). The<br />
extracellular matrix as a modulator of the inflammatory and reparative<br />
response following myocardial infarction. J. Mol. Cell. Cardiol. 48:<br />
504-511.<br />
Hansson GK (2005). Inflammation, atherosclerosis, and coronary artery<br />
disease. N. Engl. J. Med. 352: 1685-1695.<br />
Insull Jr. W (2009). The pathology of atherosclerosis: plaque<br />
development and plaque responses to medical treatment. Am. J.<br />
Med. 122: 3-14.<br />
Laflamme MA, Murry CE (2005). Regenerating the heart. Nat.<br />
Biotechnol. 23: 845-856.<br />
Michael LH, Entman ML, Hartley CJ, Youker KA, Zhu J, Hall SR,<br />
Hawkins HK, Berens K, Ballantyne CM (1995). Myocardial ischemia<br />
and reperfusion: a murine model. Am. J. Physiol. 269: H2147-2154.<br />
Migrino RQ, Aggarwal D, Konorev E, Brahmbhatt T, Bright M,<br />
Kalyanaraman B (2008). Early detection of doxorubicin<br />
cardiomyopathy <strong>using</strong> two-dimensional strain echocardiography.<br />
Ultrasound Med. Biol. 34: 208-214.<br />
Minguell JJ, Erices A (2006). Mesenchymal stem cells and the treatment<br />
of cardiac disease. Exp. Biol. Med. 231: 39-49.<br />
Park K, Chang SA, Kim HK, Park HE, Na SH, Kim YJ, Sohn DW, Oh<br />
BH, Park YB (2010). Normal ranges and physiological changes of<br />
midwall fractional shortening in healthy korean population. Korean<br />
Circ. J. 40: 587-592.<br />
Patten RD, Aronovitz MJ, Deras-Mejia L, Pandian NG, Hanak GG, Smith<br />
JJ, Mendelsohn ME, Konstam MA (1998). Ventricular remodeling in a<br />
mouse model of myocardial infarction. Am. J. Physiol. 274: H1812-<br />
1820.<br />
Pfeffer M, Braunwald E (1990). Ventricular remodeling after myocardial<br />
infarction. Experimental observations and clinical implications.<br />
Circulation, 81: 1161-1172.<br />
Samadikuchaksaraei A (2006). Stem cell therapy for acute myocardial<br />
infarction. Hellenic. J. Cardiol. 47: 100-111.<br />
Sutton MG, Sharpe N (2000). Left ventricular remodeling after<br />
myocardial infarction: Pathophysiology and therapy. Circulation, 101:<br />
2981-2988.<br />
Thygesen K, Alpert JS, White HD (2007). Universal definition of<br />
myocardial infarction. Circulation, 116: 2634-2653.<br />
Venardos KM, Perkins A, Headrick J, Kaye DM (2007). Myocardial<br />
ischemia-reperfusion injury, antioxidant enzyme systems, and<br />
selenium: a review. Curr. Med. Chem. 14: 1539-1549.<br />
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Reperfusion injury in the ischemic myocardium. Cardiovasc. Pathol.<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16393-16401, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2061<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Cardiodepression as a possible mechanism of the<br />
hypotensive effects of the methylene chloride/methanol<br />
leaf extract of Brillantaisia nitens Lindau (Acanthaceae)<br />
in rats<br />
Orelien Sylvain Mtopi Bopda 1 *, Theophile Dimo 2 , Ives Seukep Tonkep 2 , Louis Zapfack 3 ,<br />
Desire Zeufiet Djomeni 2 and Pierre Kamtchouing 2<br />
1 Department of Plant and Animal Sciences, University of Buea, P.O. Box 63 Buea, Cameroon.<br />
2 Department of Animal Biology and Physiology, University of Yaounde I, P.O. Box 812, Yaounde, Cameroon.<br />
3 Department of Vegetal Biology and Physiology, University of Yaounde I, P.O. Box 812, Yaounde, Cameroon.<br />
Accepted 26 September, 2011<br />
Brillantaisia nitens Lindau (Acanthaceae) is traditionally used in Cameroon for the management of<br />
many diseases including cardiovascular disorders. The aim of this study was to demonstrate the<br />
contribution of cardiodepressive activity of methylene chloride/methanol leaf extract of B. nitens to its<br />
hypotensive action in normotensive (NTR) and deoxycorticosterone acetate-salt hypertensive rats<br />
(DSHR). In this study, we used the direct cannulation method for blood pressure measurements and<br />
electrodes for electrocardiogram (ECG). In NTR, the systolic blood pressure dropped by 12.6, 13.8, 22.5<br />
and 39.3% at the doses 5, 10, 20 and 40 mg/kg, respectively. In DSHR, systolic blood pressure<br />
decreased by 13.8, 16.2, 16.3 and 20.4% at the same doses, respectively. B. nitens extract (40 mg/kg)<br />
produced a significant reduction of the heart activity while the blood pressure rapidly dropped. At this<br />
same dose in NTR, B. nitens induced a negative chronotropic effect by ca<strong>using</strong> a 20.59% (p
16394 Afr. J. Biotechnol.<br />
performance is, the higher the blood pressure would be.<br />
In our previous work we reported that a decrease in heart<br />
rate contributes to the hypotensive effect of methylene<br />
chloride/methanol extract of B. nitens in normotensive<br />
and hypertensive rats (Bopda et al., 2007).<br />
The aim of this study was to demonstrate the mechanistic<br />
contribution of cardiodepressive activity of B. nitens<br />
extract to its hypotensive activity on normotensive (NTR)<br />
and deoxycorticosterone acetate-salt hypertensive rats<br />
(DSHR).<br />
MATERIALS AND METHODS<br />
Plant material<br />
Fresh leaves of B. nitens were collected around Yaounde, Centre<br />
Province of Cameroon, in April 2007. The plant material was<br />
identified at the National Herbarium in Yaounde, where a voucher<br />
specimen no HNC/22729 has been deposited. The leaves were airdried<br />
and ground into powder. Air-dried material (1 kg) was<br />
macerated in 7 L of methylene chloride/methanol (v/v) for 48 h and<br />
the solution obtained after filtration was then concentrated in a<br />
rotary evaporator under reduced pressure to obtain a semi-solid<br />
material. The viscous residue thus obtained, was kept at room<br />
temperature for one week to obtain 170 g of a completely dried<br />
solid mass. The extract (800 mg) was dissolved in 0.2 ml of Tween<br />
20 and the volume of solution was then adjusted to 10 ml with<br />
distilled water to obtain a final extract concentration of 80 mg/ml.<br />
Dilution was later made so that all animals received the same<br />
volume of solution (1 ml/100 g or 0.1 ml/100 g body weight,<br />
respectively for toxicity or electrocardiogram studies).<br />
Acute toxicity test<br />
50 mice were divided into five groups of ten (sex equal) per group<br />
after 12 h fasting period, with free access to water. The mice in one<br />
of the groups received Tween 20 solution 2% (1 ml/100 g of body<br />
weight, per os), while those in the four other groups received oral<br />
doses of the extract (1000, 2000, 4000 and 8000 mg/kg,<br />
respectively). The animals were observed for obvious toxic<br />
symptoms (changes in body weight, aggressiveness, sensitivity to<br />
noise and touch, stools aspect and locomotion), and eventual<br />
mortality in each group was searched 48 h after extract<br />
administration. Animal were kept under observation for 14 days<br />
(Joshua et al., 2008; Abdulla et al., 2010).<br />
Arterial blood pressure and cardiac activity<br />
Experimental animals<br />
75 Wistar rats of 8 to 12 weeks old for both sex, and weighing<br />
between 180 to 230 g were used. They were shared into groups of<br />
five as follows: eight groups (four per animal model) were used for<br />
blood pressure measurement. For ECG investigations, four of the<br />
aforementioned groups were exploited (since blood pressure and<br />
ECG values were simultaneously recorded), while seven groups<br />
were newly set (reference drugs and their antagonists). They were<br />
carefully handled according to guidelines for the care and use of<br />
laboratory animals approved by the Japanese Pharmacological<br />
Society. The animals were maintained on a 12-h day/night cycle,<br />
with free access to standard laboratory rat chow and tap water.<br />
Normotensive rats (NTR) were used to evaluate the effects of the<br />
plant extract on blood pressure and ECG and its possible<br />
mechanism of action. To better understand the mechanism of<br />
action, we used DSHR obtained <strong>from</strong> unnephrectomized NTR, as<br />
described by Vogel and Vogel (1997). The rats were injected twice<br />
weekly with deoxycorticosterone acetate (DOCA 20 mg/kg, s.c.) in<br />
carboxymethyl-cellulose (5% of DOCA weight), for four weeks.<br />
Drinking water was replaced with a 1% NaCl solution. At the end of<br />
the treatment, rats showing a systolic blood pressure higher than<br />
150 mmHg were considered as hypertensive.<br />
Measurement of blood pressure, cardiac activity and<br />
evaluation of the effects of the plant extract<br />
The rats were anaesthetized <strong>using</strong> an intraperitoneal injection of<br />
urethane (1 g/kg). The trachea was exposed and cannulated to<br />
facilitate spontaneous respiration. Blood pressure was measured by<br />
the direct method <strong>from</strong> right carotid artery, <strong>using</strong> a cannula<br />
connected to a pressure transducer. The latter was coupled with a<br />
Biopac Student Lab. (MP35) hemodynamic recorder and a<br />
computer. ECG was measured <strong>using</strong> high sensitivity needles<br />
(electrodes), connected to the same recorder and computer. The<br />
animals were allowed to stabilize for at least 30 min before the<br />
administration of any test substances. The plant extract (5, 10, 20<br />
and 40 mg/kg) was injected via a cannula inserted into the left<br />
femoral vein.<br />
Moreover, the effects of the plant extract were compared with<br />
those of acetylcholine and isoprenaline (10 μg/kg each). The effect<br />
of the dose 40 mg/kg (which appeared to be the optimal, <strong>from</strong> our<br />
previous investigations) was examined after administration of<br />
atropine (1 mg/kg) and propranolol (100 μg/kg). Atropine and<br />
propranolol were injected intravenously 5 min before administration<br />
of the plant extract. The effectiveness of blockade was tested by<br />
injecting 10 μg/kg of isoprenaline (agonist). In another set of<br />
experiment, reserpine (5 mg/kg) was given orally to NTR once a<br />
day for three days. The effects of the extract were evaluated on the<br />
blood pressure and ECG parameters, which were observed for 1 h<br />
after test drug administration. The effect of solvent (2% Tween 20)<br />
was tested in order to ascertain that the results obtained were<br />
exclusively due to the extract. Changes in blood pressure and ECG<br />
were expressed in real values, or as a percentage of the control<br />
values obtained just before the administration of test substances.<br />
Drugs<br />
Urethane, isoprenaline and acetylcholine chloride were obtained<br />
<strong>from</strong> Prolabo, France, while atropine sulphate, propranolol, DOCA<br />
and carboxymethyl-cellulose were obtained <strong>from</strong> Sigma Chemical,<br />
St Louis, MO, USA. Heparin was <strong>from</strong> Sanofi, France. The drugs<br />
were freshly prepared before the experiment. All drugs were<br />
dissolved in distilled water except for the plant extract that was<br />
dissolved in 2% Tween 20 and the solution adjusted with distilled<br />
water.<br />
Statistical analysis<br />
Data were shown as mean ± S.E.M. Statistical significance was<br />
estimated by one way ANOVA, followed by Dunnett’s test.<br />
Difference between means were regarded as significant at p
RESULTS<br />
Bopda et al. 16395<br />
5 mg/kg<br />
10 mg/kg<br />
20 mg/kg<br />
40 mg/kg<br />
Figure 1. Effects of B. nitens methylene chloride/methanol extract on the systolic blood pressure in normotensive rats.<br />
Each point represents the mean ± SEM; n = 5; *p
16396 Afr. J. Biotechnol.<br />
5 mg/kg<br />
10 mg/kg<br />
20 mg/kg<br />
40 mg/kg<br />
Figure 2. Effects of B. nitens methylene chloride/methanol extract on the systolic blood pressure in hypertensive rats (DSHR).<br />
Each point represents the mean ± SEM; n = 5; *p
ECG (.05 - 150 Hz)<br />
B.n 40 mg/kg<br />
428.00 428.50 429.00 429.50<br />
seconds<br />
ECG (.05 - 150 Hz)<br />
430.50 431.00 431.50<br />
seconds<br />
A<br />
B<br />
Bopda et al. 16397<br />
R<br />
T<br />
P<br />
p<br />
Q<br />
S<br />
Figure 3. Effects of B. nitens (B.n., 40 mg/kg) methylene chloride/methanol extract on ECG of normotensive rat. (A) Changes in<br />
ECG immediately after B. nitens methylene chloride/methanol extract (B.n., 40 mg/kg) injection into rat’s vein; (B) normal state<br />
recovering about 4 s after extract injection to rat; P, QRS and T are various waves of normal ECG.<br />
In addition, as shown in table 2, neither atropine (1<br />
mg/kg) nor propranolol (100 μg/kg) caused any significant<br />
(p>0.05) modification of the action of B. nitens extract on<br />
ECG parameters. similarly, in reserpine (5 mg/kg/day)<br />
pre-treated rats, the elongation of R-R interval due to B.<br />
nitens (40 mg/kg) was not significantly inhibited. The<br />
20.59% (<strong>from</strong> 170 ± 10 to 205 ± 10 min) R-R interval<br />
elongation was reduced non significantly (p>0.05) by<br />
71.43% (maintaining the time at 180 ± 10 min). A non<br />
significant (p>0.05) 50% inhibition of the extract induced<br />
P wave magnitude decrease was also observed in<br />
the same animals.<br />
Effects of the methylene chloride/methanol extract of<br />
B. nitens on hypertensive rats ECG parameters<br />
In DSHR, injection of B. nitens extract (40 mg/kg)<br />
induced significant changes on T wave time, R-R interval<br />
and P wave magnitude (Figure 4; Table 3). On T wave,<br />
B. nitens extract caused a change of duration <strong>from</strong> 90 ±<br />
20 to 50 ± 10 min, representing a 44.44% (p
16398 Afr. J. Biotechnol.<br />
ECG (.05 - 150 Hz)<br />
ECG (.05 - 150 Hz)<br />
ECG (.05 - 150 Hz)<br />
B.n. 40 mg/Kg<br />
791.83 792.33 792.83 793.33<br />
seconds<br />
A<br />
B<br />
793.83 794.33 794.83 795.33<br />
seconds<br />
C<br />
797.83 798.33 798.83 799.33<br />
seconds<br />
Figure 4. Effects of B. nitens (B.n., 40 mg/kg) methylene chloride/methanol extract on DOCA-salt hypertensive rat ECG. (A) Changes in ECG<br />
immediately after B. nitens methylene chloride/methanol extract (B.n., 40 mg/kg) injection into rat’s vein; (B) Fall down of the isoelectrical line<br />
2 s after extract injection; (C) Recovery of steady state 6 s after extract injection to rat; P, QRS and T are the various waves of normal ECG.<br />
P<br />
p<br />
R<br />
Q<br />
S<br />
T<br />
1.00<br />
0.50<br />
0.00<br />
-0.50<br />
-1.00<br />
1.00<br />
0.50<br />
0.00<br />
-0.50<br />
-1.00<br />
1.00<br />
0.50<br />
0.00<br />
-0.50<br />
-1.00<br />
mV<br />
mV<br />
mV
Table 2. Effects of B. nitens methylene chloride/methanol extract, reference drugs and their antagonists on ECG of normotensive rats.<br />
ECG parameter<br />
P<br />
wave<br />
P-R<br />
interval<br />
P-R<br />
segment<br />
Time (min) Magnitude (mV)<br />
QRS<br />
complex<br />
Q-T<br />
interval<br />
T wave<br />
R-R<br />
interval<br />
P wave<br />
Complex<br />
QRS (R)<br />
Bopda et al. 16399<br />
B. nitens (40mg/kg) 30 ± 4 50 ± 9 20 ± 5 30 ± 5 105 ± 20 75 ± 10 205 ± 10 0.15 ± 0.01 0.84 ± 0.01 0.16 ± 0.01<br />
Res + B. nitens 35 ± 7 50 ± 8 20 ± 7 30 ± 7 110 ± 20 80 ± 10 180 ± 10 0.17 ± 0.01 0.87 ± 0.01 0.17 ± 0.01<br />
Atro + B. nitens 30 ± 6 50 ± 8 20 ± 4 30 ± 7 115 ± 20 85 ± 10 210 ± 10 0.16 ± 0.01 0.85 ± 0.01 0.17 ± 0.02<br />
Propra + B. nitens 30 ± 5 50 ± 8 20 ± 7 30 ± 5 110 ± 20 80 ± 10 205 ± 10 0.15 ± 0.01 0.85 ± 0.01 0.16 ± 0.01<br />
Actylcholine (10 µg/kg) 30 ± 7 50 ± 6 20 ± 6 30 ± 6 80 ± 20 50 ± 20 240 ± 20 0.19 ± 0.02 0.85 ± 0.04 0.24 ± 0.03<br />
Atro + Acetylcholine 30 ± 5 50 ± 4 20 ± 3 30 ± 8 110 ± 10 80 ± 10 180 ± 10* 0.19 ± 0.03 0.85 ± 0.04 0.19 ± 0.01<br />
Isoprenaline (10 µg/kg) -- -- -- 30 ± 5 -- -- 140 ± 20 -- 0.78 ± 0.02 --<br />
Propra + Isoprenaline 30 ± 7 50 ± 4 20 ± 5 30 ± 4 110 ± 10 80 ± 10 180 ± 10* 0.19 ± 0.03 0.85 ± 0.02 0.19 ± 0.01<br />
Each value represents the mean ± SEM; n = 5; *p
16400 Afr. J. Biotechnol.<br />
hypotensive effects in anaesthetized rats. Abdul-Ghani<br />
and Amin (1997) also found similar results while<br />
evaluating the effects of the aqueous extract of<br />
Commiphora opobalsamum on blood pressure and heart<br />
rate in rats. The earlier phase was brief and deep while<br />
the later phase was sustained. The latter was due to<br />
vasorelaxation induced by B. nitens extract, as we<br />
previously showed in normotensive rats (NTR) (Bopda et<br />
al., 2007; Dimo et al., 2007).<br />
Prompt drops in both heart rate and blood pressure<br />
have been demonstrated for several medicinal plant<br />
extracts after their administration to rat (Corallo et al.,<br />
1997; Dimo et al., 2003; Kitjaroennirut et al., 2005). We<br />
earlier reported a possible contribution of cardiodepressive<br />
activity of B. nitens extract to the rapid phase of<br />
its hypotensive effects. In NTR and DOCA-salt<br />
hypertensive rats (DSHR), B. nitens (40 mg/kg) induced a<br />
20.59 and 100% increase of R-R interval time,<br />
respectively. This corresponded to a decrease of heart<br />
rate, and confirms our previous results obtained by direct<br />
heart rate records (Bopda et al., 2007). In NTR, the<br />
extract caused a decrease of P wave and T wave<br />
magnitude; P wave and T wave are atria depolarization<br />
by nodal tissue and ventricle repolarization, respectively.<br />
Our results demonstrate that B. nitens extract inhibits<br />
atria depolarization and ventricle repolarization. We<br />
previously demonstrated on rat aorta smooth muscle that<br />
vasorelaxation induced by B. nitens extract relied on its<br />
calcium channels blocking action, which prevented the<br />
influx of extracellular calcium (Dimo et al., 2007). It is<br />
assumed nowadays that during the action potential of<br />
almost all cardiac muscle cells, depolarization is due to<br />
sodium influx, and directly followed by calcium influx in<br />
cardiac muscle cells. B. nitens also elicited a hypotensive<br />
action and a P wave magnitude decrease in DSHR. Salt<br />
given to those DSHR was NaCl and DOCA is known as a<br />
mineralocorticoid, thus has ability to retain sodium ions in<br />
rat <strong>internal</strong> medium. The higher the sodium concentration<br />
in the <strong>internal</strong> medium, the easier the muscle cells<br />
depolarization could be. Results demonstrate that B.<br />
nitens extract might have inhibited sodium influx and/or<br />
calcium influx, and then reduced ability of atria muscle<br />
cells to depolarize or to elicit a proper action potential.<br />
Furthermore, the decrease of T wave magnitude reinforced<br />
this issue, since during a normal heart contraction,<br />
ventricles repolarization is a prerequisite for a new atria<br />
depolarization. The decrease of T wave time observed in<br />
DSHR was due to the global miniaturization of the ECG<br />
duration in the presence of extract, which contributes to<br />
lowering the capacity of ventricle to totally repolarise, and<br />
hence make it difficult for the next depolarization by nodal<br />
tissue. Thus, it obviously appears that the extract exerted<br />
a depressive action on electrical activity of cardiac<br />
muscle, and then on its contraction. The relaxation of<br />
cardiac muscle might happen, as in aorta muscle, via a<br />
calcium channels blockade.<br />
Atropine and propranolol are muscarinic and βadrenoceptor<br />
blockers, respectively (Dimo et al., 2003;<br />
Bopda et al., 2007; Kouakou et al., 2008). The<br />
cardiodepressive activity of B. nitens extract was not<br />
affected by those blockers. Neither did the extract act via<br />
muscarinic receptors nor via β-adrenoceptors. Similar<br />
results were reported by Eno and Owo (1999) in their<br />
study on the cardiovascular effects of an Elaeopphorbia<br />
drupifera roots extract. The negative chronotropic effect<br />
of the extract, as well as its decreasing effect on the<br />
magnitude of P wave, were partially (but not significantly)<br />
inhibited by reserpine (5 mg/kg/day). These results might<br />
express a possible interaction between the extract and<br />
reserpine, but not on cardiac β-adrenergic receptors.<br />
Thus, the main possible mechanism of action of B nitens<br />
extract should be a direct calcium channels inhibition, as<br />
we suggested previously (Bopda et al., 2007). This might<br />
be associated with a blockade of sodium channels. While<br />
investigating the effects of some Calotropis procera<br />
extracts on the activity of diverse rabbit muscles,<br />
Moustafa et al. (2010) also suggested that the ethanol<br />
extract might act directly on the myocardium, inducing a<br />
negative chronotropic effect.<br />
In our previous works, we explained that the calcium<br />
blockade caused by B. nitens extract on vessels is due to<br />
some alkaloids (Bopda et al., 2007; Dimo et al., 2007)<br />
and also suggest that the same molecules might be<br />
responsible for the direct calcium channels inhibition on<br />
the cardiac pump. The cardiodepressive activity of B<br />
nitens extract is rather partial vis-a-vis of its hypotensive<br />
effect, since only the higher dose (40 mg/kg) was<br />
significantly efficient.<br />
More also, our results relating to acute toxicity indicate<br />
that B. nitens extract was not toxic when administered to<br />
mice by oral route. Similar results were reported by Akah<br />
et al. (2009, 2010) while evaluating the acute toxicity of<br />
the aqueous extract and that of the methanol fractions of<br />
the leaves of B. nitens in mice. All the changes on heart<br />
activity occurred within less than 10 s following extract<br />
administration. The recovery observed in all the animals,<br />
as well as the non-lethality up to 8000 mg/kg of extract,<br />
gave proof that B. nitens causes no acute toxic effect in<br />
mice or rats. Those observations justified the fact that the<br />
early hypotensive phase of B. nitens extract was linked to<br />
a non-toxic depression on ECG parameters.<br />
In conclusion, the hypotensive effects induced by the<br />
CH2Cl2/CH3OH leaf extract of B. nitens rely on its<br />
cardiodepressive activity. The extract at a higher dose<br />
(40 mg/kg) caused, in NTR and DSHR, a negative<br />
chronotropic effect and a decrease of the magnitude of P<br />
wave. The extract might act by blocking calcium channels<br />
and possibly sodium channels.
ACKNOWLEDGEMENT<br />
We are very grateful to Dr. Asongalem Emmanuel Acha<br />
(Faculty of Health Science, University of Buea), for taking<br />
his time to proof-read this paper.<br />
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Abdul-Ghani AS, Amin R (1997). Effect of aqueous extract of<br />
Commiphora opobalsamum on blood pressure and heart rate in rats.<br />
J. Ethnopharmacol. 57(3): 219-222.<br />
Abdulla MA, AL-Bayaty FH, Younis LT, Abu Hassan MI (2010). Antiulcer<br />
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Akah PA, Okolo CE, Okoye TC, Offiah NV (2010). Aqueous extract and<br />
methanol fractions of the leaves of Brillantaisia nitens Lindau<br />
reverses phenylhydrazine – induced anaemia in rats. J. Med. Plants<br />
Res. 4(3): 271-277.<br />
Akah PA, Okolo CE, Ezike Adaobi C (2009). The haematinic activity of<br />
the methanol leaf extract of Brillantaisia nitens Lindau (Acanthaceae)<br />
in rats. Afr. J. Biotechnol. 8 (10): 2389-2393.<br />
Bopda Mtopi OS, Dimo T, Nguelefack TB, Dzeufiet D, Rakotonirina SV,<br />
Kamtchouing P (2007). Effect of Brillantaisia nitens Lindau<br />
(Acanthaceae) methylene chloride/methanol leaf extract on rat<br />
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Corallo A, Foungbe S, Davy M, Cohen Y (1997). Cardiovascular<br />
pharmacology of aqueous extract of the leaves of Bridelia atroviridis<br />
Muell. Arg. (Euphorbiaceae) in the rat. J. Ethnopharmacol. 57:189-<br />
196.<br />
Dimo T, Bopda Mtopi OS, Nguelefack TB, Kamtchouing P (2007).<br />
Vasorelaxant effect of Brillantaisia nitens Lindau (Acanthaceae)<br />
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111(1): 104-109.<br />
Bopda et al. 16401<br />
Dimo T, Nguelefack TB, Tan PV, Yewah MP, Dongo E, Rakotonirina<br />
SV, Kamanyi A, Bopelet M (2003). Possible mechanisms of action of<br />
the neutral extract <strong>from</strong> Bidens pilosa L. leaves on the cardiovascular<br />
system of anaesthetized rats. Phytother. Res. 17: 1135–1139.<br />
Dimo T, Nguelefack BT, Kamtchouing P, Dongo E, Rakotonirina A,<br />
Rakotonirina SV (1999). Hypotensive effects of a methanol extract<br />
<strong>from</strong> Bidens pilosa Linn on hypertensive rats. A report <strong>from</strong> the<br />
Academy of Science - Series III – Sci. Vie, 322(4): 323-329.<br />
Eno AE, Owo OI (1999). Cardiovascular effects of an extract <strong>from</strong> the<br />
roots of a shrub elaeophorbia drupifera. Phytother. Res. 13: 549-554.<br />
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change in blood pressure levels and prevalence of hypertension in<br />
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360-365. http://dx.doi.org/10.1136/jech.2008.086355<br />
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Acute oral toxicity evaluation of some polyherbal formulations in<br />
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(2006). Prevalence, awareness and management of hypertension in<br />
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African Journal of Biotechnology Vol. 10(72), pp. 16402-16405, 16 November, 2011<br />
Available online at http://www.academicjournals.org/AJB<br />
DOI: 10.5897/AJB11.2113<br />
ISSN 1684–5315 © 2011 <strong>Academic</strong> Journals<br />
Full Length Research Paper<br />
Influence of cross-breeding of native breed sows of<br />
Zlotnicka spotted with boars of Duroc and polish large<br />
white (PLW) breeds on the slaughter value fatteners<br />
Karolina Szulc 1 *, Karol Borzuta 2 , Dariusz Lisiak 2 , Janusz T. Buczynski 1 , Jerzy Strzelecki 2 ,<br />
Eugenia Grzeskowiak 2 , Fabian Magda 2 and Beata Lisiak 2<br />
1 The Poznan University of Life Sciences, Department of Pig Breeding and Production, ul. Wolynska 33,<br />
60-637 Poznan, Poland.<br />
2 Institute of Agricultural and Food Biotechnology, Department of Meat and Fat Technology,<br />
60–111 Poznan, ul Głogowska 239, Poland.<br />
Accepted 12 October, 2011<br />
The aim of this study was the estimation of the cross-breeding influence of Zlotnicka spotted sows with<br />
boars of polish large white and Duroc breeds on carcass traits of fatteners. 50 pigs were divided into<br />
four groups: Zlotnicka spotted (ZS), Zlotnicka spotted x polish large white (ZS x PLW), Zlotnicka<br />
spotted x Duroc (ZS x D) and Zlotnicka spotted x (Zlotnicka spotted x D). Obtained results confirm the<br />
results of previous studies. It was found that animals of the native breed ZS were characterized by<br />
small height of the loin ‘eye’ (52.20mm), low meatiness (43.99%) and considerable backfat thickness<br />
(4.22 cm). The analysis of the cross-breeding influence on the value of slaughter traits, was confirmed<br />
by significant higher thickness and surface of the loin ‘eye’ in crossbred fatteners (ZS x PLW, ZS x D,<br />
ZS x (ZS x D) in comparison with purebred fatteners ZS. The highest meatiness (48%) and lowest<br />
backfat thickness (3.61cm) were observed in fatteners <strong>from</strong> group ZS x PLW. With regards to these<br />
traits, this group differed significantly <strong>from</strong> group ZS x (ZS x D). Crossbred fatteners ZS x PLW and also<br />
ZS x D had significantly higher share of meat cuts in comparison with purebred fatteners ZS and<br />
crossbred fatteners ZS x (ZS x D). However, with regards to share of fat cuts, crossbred animals ZS x<br />
PLW and ZS X D showed the significant lower capacity of these joints than groups ZS and ZS x (ZS x D).<br />
Obtained results show that crossbreeding of sows of the breed ZS with boars PLW and also D<br />
influenced significantly the value of some important slaughter traits and animals <strong>from</strong> these crossbreeding<br />
can be used for the purpose of improving economic effects of the goods production.<br />
Key words: Pigs, Zlotnicka spotted, crossbreds, slaughter value.<br />
INTRODUCTION<br />
It has been observed that carcass traits of swine breeds<br />
reared for meat usually have some faults, which makes<br />
them unsuitable for traditional culinary processes and<br />
aims. Therefore, the meat industry in many countries and<br />
also in Poland increases the interest of native races of<br />
the unique genetic value which at proper feeding, provide<br />
*Corresponding author. E-mail: karolasz@jay.au.poznan.pl.<br />
Abbreviations: PLW, Polish large white; ZS, Zlotnicka spotted;<br />
D, Duroc.<br />
the raw material particularly useful to the production of<br />
raw-ripen products. In Poland, native pigs belong to the<br />
following breeds: Zlotnicka spotted (ZS), Zlotnicka White<br />
and Pulawska breeds. Many European countries take<br />
special care of their own old races of pigs (Salvatori,<br />
2008; Szulc, 2009). Carcasses of these pigs have the<br />
thick backfat and meat is prized for its organoleptic traits.<br />
Carcasses of these pigs are also the raw material to the<br />
production of the raw-ripen ham. In Pie Noir du Pays<br />
Basque, the old race is prized for the production of the<br />
Basque ham (Szulc, 2010). In Spain, the native race<br />
Iberico is highly valued for the production of dry-cured<br />
hams and loins. In this country, 2.6 millions of Iberian
Table 1. Proximate composition of diets.<br />
Item<br />
Starter<br />
Diet<br />
Grower Finisher<br />
Dry matter (%) 90.29 90.28 90.56<br />
Energy (MJ/kg) 13.46 12.63 12.46<br />
Crude protein (%) 16.26 17.31 14.79<br />
Digestible energy (%) 13.65 14.65 12.65<br />
Crude fibre (%) 3.45 4.16 3.90<br />
Crude fat (%) 3.58 1.95 2.01<br />
Ash (%) 4.73 4.98 4.77<br />
Ca (%) 0.81 0.79 0.77<br />
P (%) 0.67 0.62 0.61<br />
Lysine (%) 1.11 0.99 0.79<br />
hams are produced annually and the production of these<br />
dry-cured hams is nowadays the known mark in many<br />
countries (Serrano et al., 2008).<br />
As it was reported by Buczyński et al. (2001),<br />
Grześkowiak et al. (2006), Strzelecki et al. (2006), and<br />
Buczyński et al. (2005), traditional Polish breeds are<br />
good and thus are quite popular because of their meat<br />
quality and quantity but one of the major disadvantages<br />
of these breeds is their low meat content (44 to 46%)<br />
comparatively, which is significantly lower in comparison<br />
with modern breeds and <strong>from</strong> here is not favoured by<br />
many commercial meat processors. It was reported by<br />
Buczyński et al. (1996), Grześkowiak et al. (2006),<br />
Strzelecki et al. (2006), Michalska and Chojnacki (2005)<br />
and also Nowachowicz (2005) that the crossbreeding<br />
project was initiated with ZS swine with breeds having the<br />
better meat content.<br />
Buczyński et al. (2001) and Nowachowicz (2005)<br />
reported that Pietrain was the breed chosen for such<br />
crossbreeding projects. Using the race Pietrain, there<br />
was observed increase of meatiness. However, it also led<br />
to the deterioration of qualitative traits of the meat. It also<br />
led to the need of initiating the project, in which<br />
qualitative traits can be improved besides the meat<br />
quantity as whole.<br />
MATERIALS AND METHODS<br />
The study was conducted in Jaworowo near Gniezno (17˚36ˈ E,<br />
52˚32ˈ N), with both purebred and crossbred swines of ZS, Duroc<br />
(ZS x D) and polish large white (ZS x PLW). Races Duroc and also<br />
PLW were chosen with regards to the good quality of the meat. In<br />
Poland, both are used widely as components for cross-breeding.<br />
Animals were divided into four experimental groups with equal<br />
numbers of sows and boars. All animals were tattooed and earmarked.<br />
Experimental animals having the average weight of 20 kg<br />
were selected and the experiment ended when animals reached the<br />
slaughter weight of about 120 kg (113.0 to 123.6 kg). The<br />
experiment was divided into starter (20 to 30 kg), grower (30 to 80<br />
kg) and finisher (over 80 kg) rations. The approximate composition<br />
of the diets is shown in Table 1. The rations in all the three stages<br />
Szulc et al. 16403<br />
were similar for all three genotypes. Fatteners were kept in<br />
collective coops with 35 animals on the plate bedding. Animals<br />
were fed ad libitum <strong>using</strong> the collective feeding and there was the<br />
stable approach to water all the time.<br />
After obtaining the final fattening, animals were transported <strong>from</strong><br />
the farm to the slaughter-house located in the distance of about 50<br />
km. Animals rested for about 2 h prior to slaughtering. Fatteners<br />
were stunned before slaughter. The carcasses were weighed with<br />
having the precision of 100 g electronic scales typical in polish<br />
slaughter-houses 30 min after slaughter and the meat content was<br />
estimated the with the help of the optical-needle apparatus CGM<br />
made by the Sydel firm (in France). The backfat thickness was also<br />
measured in 5 points on the lying right half-carcass (accurate to 0.1<br />
cm); 1) in the thickest point over the shoulder; 2) on the back -<br />
between the last thoracic vertebra and the first lumbar vertebra; 2,<br />
3, 4) in three points over the lumbar loin (on the cross I, II, III): for<br />
example under the beginning, middle and end of the section of<br />
gluteus medius muscle (Borzuta, 1998). Later, half-carcasses were<br />
cooled down <strong>using</strong> the mono-gradual system to about 4°C. After the<br />
24 h cycle of cooling down, carcasses were transported to the<br />
factory in Bieganów on the distance of about 30 km where they<br />
were cut down into fundamental cuts according to the method given<br />
in the Polish norm (PN-86-A/82002). Cuts were weighted with the<br />
scales having the precision of ± 1 g. Obtained results were<br />
analysed statistically <strong>using</strong> STATISTICA 6.0 by calculating<br />
arithmetic means and the standard deviation. One-way analysis of<br />
variance was conducted and significance of differences between<br />
genetic groups was identified with the Tukey’s test (Stanisz, 1998).<br />
RESULTS AND DISCUSSION<br />
The studied fatteners had weak traits of the slaughter<br />
value (Tables 2, 3 and 4). The observed slaughter<br />
productivity oscillated <strong>from</strong> 73.33 to 78.54% and was<br />
approximate to the results obtained earlier by other<br />
authors (Kapelański et al. 2006; Wajda and Meller, 1996;<br />
Kapelański and Rak 1999). The meat content in the pig<br />
carcass of the race Zlotnicka spotted was estimated as<br />
low. In our studies, it amounted to 43.99% and the lowest<br />
meat content was found in crossbreds ZS x ZS/ D while<br />
the highest one was in crossbreds ZS x PLW (P≤0.05).<br />
Kapelański et al. (2006) obtained the average<br />
meatiness as 44.69% but in turn, Szulc et al. (2006)
16404 Afr. J. Biotechnol.<br />
Table 2. Formation of slaughter traits of fatteners taking into consideration the genetic group.<br />
Trait<br />
ZS<br />
Genetic group<br />
ZS x PLW ZS x D ZS x (ZS x D)<br />
Slaughter weight (kg) 114.00 a ±11.05 113.10 a ±5.97 113.00 a ±8.03 123.60 b ±7.90<br />
Hot carcass weight (kg) 88.92±6.29 87.26±5.76 88.57±5.46 90.57±6.08<br />
Slaughter productivity (%) 78.25±5.39 77.24±4.93 78.54±4.60 73.33±5.06<br />
High of the loin ‘eye’ (mm) 52.20 a ±6.25 61.89 b ±11.61 60.10 b ±7.55 61.00 b ±6.88<br />
Loin ‘eye’ area (cm 2 ) 29.61 a ±5.46 35.97 b ±5.61 35.24 b ±4.77 36.63 b ±7.05<br />
Meat content (%) 43.99±5.54 48.00 a ±3.47 45.02±3.61 42.47 b ±3.41<br />
a, b Means along the same row with different superscripts are significant (P≤0.05). Values are mean± SD.<br />
Table 3. Formation of the backfat thickness in fatteners taking into consideration the genetic group.<br />
Trait<br />
ZS<br />
Genetic group<br />
ZS x PLW ZS x D ZS x (ZS x D)<br />
Backfat thickness over shoulder (cm) 5.42±0.86 4.70 a ±0.77 5.35±0.49 6.08 b ±0.75<br />
Backfat thickness on the back (cm) 3.13±0.95 2.72 a ±0.46 2.87±0.51 3.29 b ±0.70<br />
Backfat thickness on the cross I (cm) 4.40 b ±0.94 3.61 a ±0.38 3.88±0.70 4.45 b ±0.64<br />
Backfat thickness on the cross II (cm) 3.63±0.97 3.04 a ±0.45 3.20±0.66 3.92 b ±0.62<br />
Backfat thickness on the cross III (cm) 4.54±1.26 3.96 a ±0.51 4.00±0.70 4.82 b ±0.63<br />
Backfat thickness <strong>from</strong> five measurements (cm) 4.22±0.93 3.61 a ±0.36 3.86±0.58 4.51 b ±0.57<br />
a, b Means along the same row with different superscripts are significant (P≤ 0.05). Values are mean± SD.<br />
Table 4. Productivity of cuts in analysed carcasses.<br />
Trait<br />
ZS<br />
Genetic group<br />
ZS x PLW ZS x D ZS x (ZS x D)<br />
Pork-chop (%) 8.08 a ±0.79 9.01 b ±0.72 9.00 b ±0.66 8.02 a ±0.69<br />
Ham with shank (%) 25.38 a ±1.32 26.14 b ±1.47 26.49 b ±1.31 25.34 a ±1.23<br />
Neck (%) 6.12±0.78 5.99±0.53 5.77±0.64 5.95±0.61<br />
Shoulder with shank (%) 13.30±0.96 13.48±1.24 13.68±0.74 13.08±1.17<br />
Sum of four meaty cuts down (%) 52.88 a *<br />
54.62 b<br />
54.94 b<br />
52.39 a<br />
Belly with bone (%) 9.92±1.38 9.65±1.48 9.24±3.16 10.56±1.21<br />
Backfat with skin (%) 13.71 a ±2.57 11.92 b ±1.53 12.35 b ±2.37 15.10 a ±1.83<br />
Dewlap (%) 4.84±0.58 4.55±0.53 4.31±0.89 4.68±0.77<br />
Grain (%) 2.19±0.77 2.36±0.86 2.84±1.03 2.55±0.72<br />
Sum of four fat cuts 30.66 a *<br />
28.48 b<br />
28.74 b<br />
32.89 a<br />
a, b means along the same row with different superscripts are significant (P≤ 0.01). Values are mean± SD ; *values are expressed as mean.<br />
noted the meat content as 47%. Similar results were<br />
obtained by Grześkowiak et al. (2007). In the experiment,<br />
on cross-breeding of the Zlotnicka White race with race<br />
PLW conducted by Strzelecki et al. (2006), they obtained<br />
similar effects as in this work and for example meatiness<br />
increased <strong>from</strong> 46.4 to 49.7%. The increase of the<br />
surface of the loin ‘eye’ was observed <strong>from</strong> 36 to 42 cm 2<br />
but the medium backfat thickness decreased <strong>from</strong> 4.1 to<br />
3.1 cm. In this work, it was noticed that the surface of the<br />
loin ‘eye’ was small and was about 30 cm 2 . It confirms the<br />
results of earlier research (Kapelański and Rak, 1999;<br />
Grześkowiak et al., 2007). Height of the loin ‘eye’ was<br />
higher significantly in crossbreeds groups than in<br />
purebred groups ZS. The backfat in Zlotnicka pigs was<br />
rather thick and the mean <strong>from</strong> five measurements was<br />
4.22 cm. In other studies, it was noticed that the thinner<br />
backfat was 3.3 cm as was given by Kapelański and Rak<br />
(1999), 3.2 cm by Grześkowiak et al. (2009) and 2.4 cm<br />
by Kapelański et al. (2006). The highest mean of the<br />
backfat thickness in the five points was found in group ZS<br />
x Z/D, and the lowest one was in group ZS x PLW.<br />
Between groups, significant difference was found in the
ackfat thickness in all the measured points.<br />
Higher productivity of pork-chop than for ham was<br />
found in crossbreeds ZS x PLW and ZS x D lacked<br />
significant differences in the productivity of shoulder and<br />
neck. The share of four cuts (pork-chop, ham, shoulder,<br />
neck) in these groups were found on the average <strong>from</strong><br />
54.6 to 54.9% and was bigger; about 2% in comparison<br />
with the remaining groups. Grześkowiak et al. (2006)<br />
showed the increase of the share of the pork-chop, neck<br />
and shoulder in crossbreds ZS x PLW. Improvement of<br />
the slaughter value in crossbreds with Duroc in<br />
comparison with purebred fatteners, was observed for<br />
race Cinta Sense. In crossbreds, the productivity of four<br />
cuts increased <strong>from</strong> about 54 to about 68% (Franci et al.,<br />
2003). Studies were conducted on native races in other<br />
European countries pointing to the worse muscularity,<br />
bigger backfat thickness and lower share of ham,<br />
shoulder blade and pork-chop in comparison with Duroc<br />
(Serrano et al., 2008).<br />
It should be also noted that fattening of native pigs in<br />
Italy and in Spain had body mass of about 140 to 150 kg;<br />
about 40 kg higher than that in Poland. It resulted <strong>from</strong><br />
the destiny of this raw material to the production of rawripen<br />
manufacturers. In Poland, possibilities of <strong>using</strong><br />
native pigs and their crossbreds to such production,<br />
particularly in the light of the obtained result in this work<br />
should be considered.<br />
Conclusion<br />
Analyzing the influence of cross-breeding on the results<br />
of the slaughter utility, showed that animals of all<br />
crossbred groups had significant bigger thickness and<br />
surface of the loin ‘eye’ in comparison with purebred<br />
fatteners. Fatteners <strong>from</strong> group ZS x PLW, had the<br />
highest meatiness which was on the average 48%. The<br />
lowest meatiness was found in animals <strong>from</strong> groups ZS x<br />
(ZS x D) and the difference among these groups was<br />
statistically significant.<br />
The thinnest backfat was observed in fatteners <strong>from</strong><br />
group ZS x PLW (3.61 cm) while the thickest (4.51 cm)<br />
was in animals <strong>from</strong> group ZS x (ZS x D). Difference was<br />
found among these groups, which proved significant<br />
bigger share of four meaty cuts in comparison with<br />
purebred fatteners ZS and also crossbreds ZS x (ZS x<br />
D). In turn, with regards to share of fat cuts, crossbred<br />
animals ZS x PLW and ZS x D showed the lower content<br />
of these cuts (P≤0.05) than groups ZS and ZS x (ZS x D).<br />
ACKNOWLEDGMENTS<br />
The study was conducted within the framework of the<br />
Ministry of Science and Higher Education grant no. N<br />
N311 266336 ‘Analysis of suitability of Zlotnicka Spotted<br />
pigs and their crosses with Duroc and Large White Polish<br />
Szulc et al. 16405<br />
pigs in the production of heavy fatteners, porcine material<br />
for production of raw and raw maturing products’.<br />
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